mRNA_H-paniculata_contig17200.4013.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17200.4013.1
Unique NamemRNA_H-paniculata_contig17200.4013.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17200.4013.1 vs. uniprot
Match: D8LBV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 8.410e-25
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 QVSYTVMLKGYGRVGDLGGSEVMFELMCHDKDQKPDVVALNSLLDACVRNNDMRRAVEILEQ 186
            QVS+TVMLKGYGR+GDLG +E+MFE+M  D+DQ+PDVVALNS+LDACVRN D+RRAVEILEQ
Sbjct:  639 QVSFTVMLKGYGRIGDLGAAELMFEVMAADRDQRPDVVALNSILDACVRNGDLRRAVEILEQ 700
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BLAST of mRNA_H-paniculata_contig17200.4013.1 vs. uniprot
Match: A0A6H5L7F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 8.460e-25
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 QVSYTVMLKGYGRVGDLGGSEVMFELMCHDKDQKPDVVALNSLLDACVRNNDMRRAVEILEQ 186
            QVS+TVMLKGYGR+GDLG +E+MFE+M  D+DQ+PDVVALNS+LDACVRN D+RRAVEILEQ
Sbjct: 1107 QVSFTVMLKGYGRIGDLGAAELMFEVMAADRDQRPDVVALNSILDACVRNGDLRRAVEILEQ 1168
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BLAST of mRNA_H-paniculata_contig17200.4013.1 vs. uniprot
Match: A0A835YV31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV31_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.210e-9
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    4 VSYTVMLKGYGRVGDLGGSEVMFELMCHDKDQKPDVVALNSLLDACVRNNDMRRAVEILEQVHMYIGV 207
            V+Y++M+KGYGRVG+L  +   F  +  D    PDVVALNS LDACVR  D+  A+  L+     + V
Sbjct:  519 VTYSIMIKGYGRVGNLEAARAAFGALLRDPRACPDVVALNSYLDACVRCGDLPAALSTLDAAAQNLAV 586
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BLAST of mRNA_H-paniculata_contig17200.4013.1 vs. uniprot
Match: A0A7S1ESQ2_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESQ2_9RHOD)

HSP 1 Score: 51.2 bits (121), Expect = 1.060e-5
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    4 VSYTVMLKGYGRVGDLGGSEVMFELMCHDKDQKPDVVALNSLLDACVRNNDMRRAVEILEQVHMYIG 204
            +SY+VMLK YGR G+  G +   + M   K  KPDV+  N+ +DA +R ND   A EIL  ++   G
Sbjct:  350 ISYSVMLKAYGRAGNASGIQKTLDRM-QAKSVKPDVIVFNTAIDALIRCNDFVCAREILSGMYSEWG 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17200.4013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LBV9_ECTSI8.410e-2579.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7F1_9PHAE8.460e-2579.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV31_9STRA1.210e-945.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1ESQ2_9RHOD1.060e-541.79Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17200contigH-paniculata_contig17200:4476..4694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D8LBV9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size201
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.245065-UTR-H-paniculata_contig17200:4475..44931622929357.245065-UTR-H-paniculata_contig17200:4475..4493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17200 4476..4493 +
1691480828.718958-UTR-H-paniculata_contig17200:4475..44931691480828.718958-UTR-H-paniculata_contig17200:4475..4493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17200 4476..4493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.2711458-CDS-H-paniculata_contig17200:4493..46941622929357.2711458-CDS-H-paniculata_contig17200:4493..4694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17200 4494..4694 +
1691480828.730927-CDS-H-paniculata_contig17200:4493..46941691480828.730927-CDS-H-paniculata_contig17200:4493..4694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17200 4494..4694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17200.4013.1prot_H-paniculata_contig17200.4013.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17200 4494..4694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17200.4013.1

>prot_H-paniculata_contig17200.4013.1 ID=prot_H-paniculata_contig17200.4013.1|Name=mRNA_H-paniculata_contig17200.4013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MLKGYGRVGDLGGSEVMFELMCHDKDQKPDVVALNSLLDACVRNNDMRRA
VEILEQVHMYIGVALR*
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mRNA from alignment at H-paniculata_contig17200:4476..4694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17200.4013.1 ID=mRNA_H-paniculata_contig17200.4013.1|Name=mRNA_H-paniculata_contig17200.4013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig17200:4476..4694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTTCCTACACGGTGATGCTGAAGGGGTATGGCCGTGTCGGAGATCT
TGGCGGGTCCGAGGTGATGTTCGAACTCATGTGCCACGACAAGGATCAGA
AGCCCGATGTGGTGGCACTCAACTCTCTGCTCGACGCGTGCGTGCGCAAC
AATGACATGAGGCGTGCTGTTGAAATTCTCGAGCAGGTACATATGTATAT
CGGAGTCGCCCTACGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17200:4476..4694+

>mRNA_H-paniculata_contig17200.4013.1 ID=mRNA_H-paniculata_contig17200.4013.1|Name=mRNA_H-paniculata_contig17200.4013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig17200:4476..4694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGAAGGGGTATGGCCGTGTCGGAGATCTTGGCGGGTCCGAGGTGAT
GTTCGAACTCATGTGCCACGACAAGGATCAGAAGCCCGATGTGGTGGCAC
TCAACTCTCTGCTCGACGCGTGCGTGCGCAACAATGACATGAGGCGTGCT
GTTGAAATTCTCGAGCAGGTACATATGTATATCGGAGTCGCCCTACGATA
GATGCTGAAGGGGTATGGCCGTGTCGGAGATCTTGGCGGGTCCGAGGTGA
TGTTCGAACTCATGTGCCACGACAAGGATCAGAAGCCCGATGTGGTGGCA
CTCAACTCTCTGCTCGACGCGTGCGTGCGCAACAATGACATGAGGCGTGC
TGTTGAAATTCTCGAGCAGGTACATATGTATATCGGAGTCGCCCTACGAT
AG
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