prot_H-paniculata_contig172.4010.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig172.4010.1
Unique Nameprot_H-paniculata_contig172.4010.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length211
Homology
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BLAST of mRNA_H-paniculata_contig172.4010.1 vs. uniprot
Match: D8LSQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ0_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 6.910e-38
Identity = 88/192 (45.83%), Postives = 112/192 (58.33%), Query Frame = 0 
Query:   20 IRLQKISLPMYGREISAAGLSAITGSMTELTSLNLEGCNSPGVTSQGLAEISRLKELRFLELANVRAFDDHALSVVCPSCSKLQTLNLNGTGVHLAQGLAFVGAGMTDLSLEHTNVDDDAMDAVASLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASREGD-GGHPASAVEALRRSTAALNIRV 210
            +RL+ + L   G  I++ GLSA+ G +T LT ++LEGC  PGVTSQ LA ++RL  L++L +A V AFDD AL+ VC SC+ L+ LNL  T V  A GLA +G+ M DLSL HTN+DDD MDAVASL                                    A++EG  GG  +SAVE LR  TAALNIR+
Sbjct:  273 LRLESLVLQHGGGGITSVGLSALVG-LTSLTRMDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 463
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BLAST of mRNA_H-paniculata_contig172.4010.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 7.040e-36
Identity = 87/192 (45.31%), Postives = 110/192 (57.29%), Query Frame = 0 
Query:   20 IRLQKISLPMYGREISAAGLSAITGSMTELTSLNLEGCNSPGVTSQGLAEISRLKELRFLELANVRAFDDHALSVVCPSCSKLQTLNLNGTGVHLAQGLAFVGAGMTDLSLEHTNVDDDAMDAVASLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASREGD-GGHPASAVEALRRSTAALNIRV 210
            +RL+ + L   G  I+  GLSA+ G +T LT L+LEGC  PGVTSQ LA ++RL  L++L +A V AFDD AL+ VC SC+ L+ LNL  T V  A GL  +G+ + DLSL HTN+DDD MDAVASL                                    A++EG  GG  +SAVE LR  TAALNIR+
Sbjct:  891 LRLESLVLQHGGGGITGVGLSALVG-LTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLGLLGSAVIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 1081
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig172.4010.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSQ0_ECTSI6.910e-3845.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KH38_9PHAE7.040e-3645.31UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 17..119
e-value: 5.5E-15
score: 56.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 123..208
e-value: 8.0E-9
score: 37.1
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 22..192
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 22..192
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 19..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig172contigH-paniculata_contig172:6917..9750 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig172.4010.1mRNA_H-paniculata_contig172.4010.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig172 3777..10759 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig172.4010.1 ID=prot_H-paniculata_contig172.4010.1|Name=mRNA_H-paniculata_contig172.4010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MTGASGSGGGGGEQRIGREIRLQKISLPMYGREISAAGLSAITGSMTELT
SLNLEGCNSPGVTSQGLAEISRLKELRFLELANVRAFDDHALSVVCPSCS
KLQTLNLNGTGVHLAQGLAFVGAGMTDLSLEHTNVDDDAMDAVASLRGLT
TLTLRGTKVTGVGITRLSCLSNLRSLNLAGTSASREGDGGHPASAVEALR
RSTAALNIRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf