mRNA_H-paniculata_contig1719.4006.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1719.4006.1
Unique NamemRNA_H-paniculata_contig1719.4006.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: D8LN40_ECTSI (60S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN40_ECTSI)

HSP 1 Score: 383 bits (983), Expect = 9.070e-126
Identity = 195/220 (88.64%), Postives = 209/220 (95.00%), Query Frame = 3 
Query: 1059 LQPKVDLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNEGFQRKWGGGIMGLKTQRKLEKRQQAIEAELAKKAQY 1718
            +QPKVDLSRFVKWPRYIRLQRQ+KIL+QRLKVPPS+NQFSK +DKNQATELLK+LMKYQPEDKKAK  RLKEIAAAKEAGK PAPS+APKV+KFGLKHVTTLIEEQKASLVVIAHDV PIELVVWLPALCRKM IPYCI+K K RLGTLVHQKNAAV+CLT VNKEDESKL+NLKSNF +QFNEGF RKWGGG+MGLKTQRKLEKRQ+AIEAELAKKAQY
Sbjct:   37 IQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGKEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVTPIELVVWLPALCRKMGIPYCIMKGKARLGTLVHQKNAAVICLTTVNKEDESKLSNLKSNFTAQFNEGFVRKWGGGVMGLKTQRKLEKRQKAIEAELAKKAQY 256
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BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: A0A0P1B814_PLAHL (60S ribosomal protein L7a n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B814_PLAHL)

HSP 1 Score: 290 bits (742), Expect = 1.110e-89
Identity = 155/222 (69.82%), Postives = 181/222 (81.53%), Query Frame = 3 
Query: 1059 LQPKVDLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNE--GFQRKWGGGIMGLKTQRKLEKRQQAIEAELAKKAQY 1718
            +QPK DLSRFV+WPRY+RLQRQ+KIL QRLKVPPS+NQFS  +DKN AT+L KLL+KYQPE K AK LRL+ IAA K+    P     P V+KFGL HVT+LIE +KA LVVIAHDVNPIELVV+LPALCR+ DIPYCI+K K RLG LVHQKNAAVV LT VNKED++K ++L   FR++FNE    +RKWGGGIMGLKTQ+KLE R++AI AE AKKAQY
Sbjct:   48 IQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKQEATAP-----PAVVKFGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSQVFRAKFNEDSATRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264
[Close]
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: F0Y2N8_AURAN (60S ribosomal protein L7a (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2N8_AURAN)

HSP 1 Score: 290 bits (741), Expect = 1.120e-89
Identity = 150/219 (68.49%), Postives = 178/219 (81.28%), Query Frame = 3 
Query: 1059 LQPKVDLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNEGFQ--RKWGGGIMGLKTQRKLEKRQQAIEAELAKK 1709
            +QP  DLSRFVKWPRY+RLQRQKKIL QRLKVPP++NQF+  LDKNQA EL KLLMKYQPEDK AK  R+K +A AK AG      +AP V+KFGLKHVT L+E +KA LV IA DV+PIELVVWLPALC+KMD+PYCI+K+K RLGT+VHQK AAV CLT V KED+  L+ L+SNF++ +N+     RKWGGGIMGLKTQ KL KR++A++AELAKK
Sbjct:   36 IQPTRDLSRFVKWPRYVRLQRQKKILQQRLKVPPALNQFATTLDKNQAAELFKLLMKYQPEDKAAKADRVKALAEAKAAGGAAPEGKAPTVVKFGLKHVTYLVENKKAKLVCIASDVDPIELVVWLPALCKKMDVPYCIVKNKSRLGTVVHQKTAAVCCLTTVKKEDQHSLDQLRSNFKAMYNDNVAHARKWGGGIMGLKTQAKLAKREKALQAELAKK 254
[Close]
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: A0A3R7JAR0_9STRA (60S ribosomal protein L7a n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7JAR0_9STRA)

HSP 1 Score: 289 bits (740), Expect = 2.280e-89
Identity = 154/222 (69.37%), Postives = 180/222 (81.08%), Query Frame = 3 
Query: 1059 LQPKVDLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNEG--FQRKWGGGIMGLKTQRKLEKRQQAIEAELAKKAQY 1718
            +QPK DLSRFV+WPRY+RLQRQ+KIL QRLKVPPSVNQFS  LDKN AT+L KLL+KYQPE K AK LRL+ IAA KE    P     P V+KFGL HVT+L+E +KA LVVIAHDV+PIELVV+LPALCR+ DIPYCI+K K RLG LVHQKNAAVV LT VNKED++K ++L   F ++FNE    +RKWGGGIMGLKTQ+KLE R++A+ AE AKKAQY
Sbjct:   49 IQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSVNQFSNTLDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVVKFGLNHVTSLVENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKSRLGQLVHQKNAAVVALTHVNKEDKAKFDSLSEAFHAKFNEDSTIRRKWGGGIMGLKTQKKLELREKAVAAEAAKKAQY 265
[Close]
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: A0A6V1R9A7_HETAK (60S ribosomal protein L7a n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9A7_HETAK)

HSP 1 Score: 289 bits (739), Expect = 2.290e-89
Identity = 154/220 (70.00%), Postives = 185/220 (84.09%), Query Frame = 3 
Query: 1068 KVDLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEA-GKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNEGFQRKWGGGIMGLKTQRKLEKRQQAIEAELAKK--AQY 1718
            K DLSR+VKWPR +R+QRQ+KIL+QRLKVPP++ QFS+ L+KNQATEL KLL+KYQPE KKAK  RLKE+AAA    G+ P P+     LK+GLKHVTTLIE+++A LV IAHDVNP+ELVVWLPALCRKM +P+C++K K RLGTL H+KNAAVV LT VNKED++KL+ L +NF +QFN+   RKWGGGIMGLKTQRKLEKRQ+A+EAELAKK  AQY
Sbjct:   41 KRDLSRYVKWPRNVRIQRQRKILLQRLKVPPAIQQFSQPLEKNQATELFKLLVKYQPETKKAKQQRLKEMAAAGATKGEKPGPT-----LKYGLKHVTTLIEQKEAKLVCIAHDVNPLELVVWLPALCRKMGVPFCVVKDKARLGTLCHKKNAAVVALTEVNKEDKAKLDTLGANFTAQFNDTPVRKWGGGIMGLKTQRKLEKRQKALEAELAKKTSAQY 255
[Close]
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: A0A7S0LF41_9EUKA (60S ribosomal protein L7a n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LF41_9EUKA)

HSP 1 Score: 288 bits (737), Expect = 5.190e-89
Identity = 146/214 (68.22%), Postives = 174/214 (81.31%), Query Frame = 3 
Query: 1074 DLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNEGFQRKWGGGIMGLKTQRKLEKRQQAIEAELAKKAQ 1715
            DLSR+V+WPRY+R+QRQKK+L+QRLKVPPS+NQF + LDKNQA+EL KLL+KYQPE K AK  RL+ +A A  A +       P  LK+GLKHVTTLIE++KA LV+I+HDV+PIELV+WLPALCRKM++P+CI+K K RLGTL H+K  +VV LTAVN EDESKL  L  N R QFNE  +RKWGGGIMGLKTQ KL KR QAIEAELAKKA+
Sbjct:   43 DLSRYVRWPRYVRIQRQKKVLLQRLKVPPSINQFRRTLDKNQASELFKLLVKYQPETKAAKATRLETLAKATAAKENTTSGPPPATLKYGLKHVTTLIEQKKAKLVIISHDVDPIELVLWLPALCRKMNVPFCIVKGKSRLGTLTHKKTCSVVALTAVNNEDESKLKTLAENCRVQFNENVERKWGGGIMGLKTQAKLTKRAQAIEAELAKKAE 256
[Close]
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: A0A7S3HBR5_9STRA (60S ribosomal protein L7a n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBR5_9STRA)

HSP 1 Score: 286 bits (733), Expect = 1.960e-88
Identity = 144/214 (67.29%), Postives = 176/214 (82.24%), Query Frame = 3 
Query: 1074 DLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNEGFQRKWGGGIMGLKTQRKLEKRQQAIEAELAKKAQ 1715
            DLSR+V+WPRY+R+QRQKKIL+QRLKVPPS+NQF + LDKNQA+EL KLL+KYQPE K AK  RL+ +A A  A ++      P  LKFGLKHVTTLIE++KA LVVI HDV+PIELV+WLPALCRKM++P+ I+K K RLGTL H+K  +VVCLT+VNKEDESKL  L  NF++QFN+  +RKWGGGIMGLKTQ KL+KR +A+E E AKKA+
Sbjct:   42 DLSRYVRWPRYVRIQRQKKILLQRLKVPPSINQFQRTLDKNQASELFKLLVKYQPETKAAKTTRLEALAQATAAKESTPSGPPPATLKFGLKHVTTLIEQKKAKLVVIPHDVDPIELVLWLPALCRKMNVPFAIVKGKSRLGTLTHKKTCSVVCLTSVNKEDESKLKTLGENFKAQFNDNVERKWGGGIMGLKTQAKLDKRAKALEVEEAKKAE 255
[Close]
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: K3WB90_GLOUD (60S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WB90_GLOUD)

HSP 1 Score: 284 bits (726), Expect = 3.080e-87
Identity = 151/222 (68.02%), Postives = 180/222 (81.08%), Query Frame = 3 
Query: 1059 LQPKVDLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNEGF--QRKWGGGIMGLKTQRKLEKRQQAIEAELAKKAQY 1718
            +QPK DLSRFV+WPRY+R+QRQ+KIL QRLKVPPS+NQF+  +DKN A +L KLL+KYQPE K AK LRL+ IAA KE    P     P V+K+GL HVT+LIE +KA LVVIAHDVNPIELVV+LPALCRK DIPY I+K K RLG LVH+KNAAVV LT VNKED+SK ++L S F+++FN+    +RKWGGGIMGLKTQ+KLE R++AI AE AKKAQY
Sbjct:   53 IQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFTNTIDKNTAADLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVIKYGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRKFDIPYTIVKGKARLGQLVHKKNAAVVALTHVNKEDKSKFDSLASAFKTKFNDDSTTRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 269
[Close]
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: A0A3M6VIG5_9STRA (60S ribosomal protein L7a n=20 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VIG5_9STRA)

HSP 1 Score: 283 bits (724), Expect = 4.810e-87
Identity = 151/222 (68.02%), Postives = 179/222 (80.63%), Query Frame = 3 
Query: 1059 LQPKVDLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNEG--FQRKWGGGIMGLKTQRKLEKRQQAIEAELAKKAQY 1718
            +QPK DLSRFV+WPRY+RLQRQ+KIL QRLKVPPS+NQFS  L+KN AT+L KLL+KYQPE K AK LRL+ IAA KE    P     P V+K+GL HVT+LIE +KA LVVIAHDV PIELVV+LPALCR+ +IPYCI+K K RLG LVH+KNAA V LT VNKED++K ++L   FRS+FN+    +RKWGGGIMGLKTQ+KLE R++AI AE AKKAQY
Sbjct:   46 IQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTLEKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVVKYGLNHVTSLIENKKAKLVVIAHDVEPIELVVFLPALCRQFNIPYCIVKGKARLGQLVHKKNAAAVALTHVNKEDKAKFDSLTEAFRSKFNDDTVIRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 262
[Close]
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Match: M4B6Z0_HYAAE (60S ribosomal protein L7a n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6Z0_HYAAE)

HSP 1 Score: 283 bits (724), Expect = 5.140e-87
Identity = 152/222 (68.47%), Postives = 179/222 (80.63%), Query Frame = 3 
Query: 1059 LQPKVDLSRFVKWPRYIRLQRQKKILIQRLKVPPSVNQFSKCLDKNQATELLKLLMKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEEQKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNAAVVCLTAVNKEDESKLNNLKSNFRSQFNEGF--QRKWGGGIMGLKTQRKLEKRQQAIEAELAKKAQY 1718
            +QPK DLSRFV+WPRY+R+QRQ+KIL QRLKVPPS+NQFS  LDKN AT+L KLL+KYQPE K AK LRL+ IAA KE    P     P V+KFGL HVTTLIE ++A LVVIAHDV+PIELVV+LPALCR+ DIPYCIIK K RLG LVHQKNAA V LT VNKED++K ++L    R+++N+    +RKWGGGIMGLKTQ+KLE R++AI AE AKKAQY
Sbjct:   48 IQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFSYALDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PSVVKFGLNHVTTLIETKRAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIIKGKARLGQLVHQKNAAAVALTHVNKEDKAKFDSLAGVVRAKYNDDSTSRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1719.4006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN40_ECTSI9.070e-12688.6460S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID... [more]
A0A0P1B814_PLAHL1.110e-8969.8260S ribosomal protein L7a n=2 Tax=Peronosporaceae ... [more]
F0Y2N8_AURAN1.120e-8968.4960S ribosomal protein L7a (Fragment) n=1 Tax=Aureo... [more]
A0A3R7JAR0_9STRA2.280e-8969.3760S ribosomal protein L7a n=8 Tax=Peronosporaceae ... [more]
A0A6V1R9A7_HETAK2.290e-8970.0060S ribosomal protein L7a n=2 Tax=Heterosigma akas... [more]
A0A7S0LF41_9EUKA5.190e-8968.2260S ribosomal protein L7a n=1 Tax=Coccolithus braa... [more]
A0A7S3HBR5_9STRA1.960e-8867.2960S ribosomal protein L7a n=1 Tax=Spumella elongat... [more]
K3WB90_GLOUD3.080e-8768.0260S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID... [more]
A0A3M6VIG5_9STRA4.810e-8768.0260S ribosomal protein L7a n=20 Tax=Peronosporaceae... [more]
M4B6Z0_HYAAE5.140e-8768.4760S ribosomal protein L7a n=1 Tax=Hyaloperonospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1719contigH-paniculata_contig1719:13867..17286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.5
Seed ortholog evalue2e-75
Seed eggNOG ortholog2880.D8LN40
Preferred nameDOCK4
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K02936,ko:K08272,ko:K11649,ko:K17697
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03010,ko04015,ko04150,ko04152,ko04714,ko04723,ko04923,ko05225,map00561,map01100,map03010,map04015,map04150,map04152,map04714,map04723,map04923,map05225
KEGG ModuleM00098,M00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000470,GO:0000491,GO:0000492,GO:0002181,GO:0003008,GO:0003013,GO:0003018,GO:0003056,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005096,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006937,GO:0006940,GO:0008015,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009987,GO:0010467,GO:0012505,GO:0014910,GO:0014911,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0017016,GO:0017048,GO:0019229,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030054,GO:0030165,GO:0030234,GO:0030334,GO:0030335,GO:0030515,GO:0030695,GO:0030971,GO:0031090,GO:0031267,GO:0031974,GO:0031981,GO:0032420,GO:0032421,GO:0032501,GO:0032879,GO:0032991,GO:0034470,GO:0034512,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035150,GO:0035296,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042254,GO:0042273,GO:0042330,GO:0042788,GO:0042995,GO:0043005,GO:0043043,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0043603,GO:0043604,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045906,GO:0045932,GO:0045986,GO:0046483,GO:0048365,GO:0048518,GO:0048519,GO:0048522,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050880,GO:0050896,GO:0051020,GO:0051179,GO:0051239,GO:0051241,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051674,GO:0051716,GO:0055044,GO:0060326,GO:0060589,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090066,GO:0090257,GO:0090304,GO:0097159,GO:0097458,GO:0097746,GO:0097755,GO:0098588,GO:0098772,GO:0098805,GO:0098858,GO:0098862,GO:0120025,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903522,GO:1903523,GO:1904694,GO:1904752,GO:1904754,GO:1990782,GO:1990904,GO:2000145,GO:2000147
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG1358@1,KOG3166@2759
EC3.1.1.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01002,ko03009,ko03011,ko03021,ko03036,ko04131
Exons5
Model size2120
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929356.5229952-UTR-H-paniculata_contig1719:13866..142651622929356.5229952-UTR-H-paniculata_contig1719:13866..14265Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1719 13867..14265 -
1691480828.4166949-UTR-H-paniculata_contig1719:13866..142651691480828.4166949-UTR-H-paniculata_contig1719:13866..14265Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1719 13867..14265 -
1622929356.5862663-UTR-H-paniculata_contig1719:15644..156681622929356.5862663-UTR-H-paniculata_contig1719:15644..15668Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1719 15645..15668 -
1691480828.4532938-UTR-H-paniculata_contig1719:15644..156681691480828.4532938-UTR-H-paniculata_contig1719:15644..15668Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1719 15645..15668 -
1622929356.6010299-UTR-H-paniculata_contig1719:15859..159281622929356.6010299-UTR-H-paniculata_contig1719:15859..15928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1719 15860..15928 -
1691480828.4625762-UTR-H-paniculata_contig1719:15859..159281691480828.4625762-UTR-H-paniculata_contig1719:15859..15928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1719 15860..15928 -
1622929356.616009-UTR-H-paniculata_contig1719:16156..172861622929356.616009-UTR-H-paniculata_contig1719:16156..17286Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1719 16157..17286 -
1691480828.471431-UTR-H-paniculata_contig1719:16156..172861691480828.471431-UTR-H-paniculata_contig1719:16156..17286Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1719 16157..17286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929356.5390215-CDS-H-paniculata_contig1719:14265..144991622929356.5390215-CDS-H-paniculata_contig1719:14265..14499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1719 14266..14499 -
1691480828.4277115-CDS-H-paniculata_contig1719:14265..144991691480828.4277115-CDS-H-paniculata_contig1719:14265..14499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1719 14266..14499 -
1622929356.5539255-CDS-H-paniculata_contig1719:14715..148741622929356.5539255-CDS-H-paniculata_contig1719:14715..14874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1719 14716..14874 -
1691480828.435958-CDS-H-paniculata_contig1719:14715..148741691480828.435958-CDS-H-paniculata_contig1719:14715..14874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1719 14716..14874 -
1622929356.5697627-CDS-H-paniculata_contig1719:15539..156441622929356.5697627-CDS-H-paniculata_contig1719:15539..15644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1719 15540..15644 -
1691480828.44434-CDS-H-paniculata_contig1719:15539..156441691480828.44434-CDS-H-paniculata_contig1719:15539..15644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1719 15540..15644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1719.4006.1prot_H-paniculata_contig1719.4006.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1719 14266..15644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1719.4006.1

>prot_H-paniculata_contig1719.4006.1 ID=prot_H-paniculata_contig1719.4006.1|Name=mRNA_H-paniculata_contig1719.4006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MKYQPEDKKAKHLRLKEIAAAKEAGKTPAPSRAPKVLKFGLKHVTTLIEE
QKASLVVIAHDVNPIELVVWLPALCRKMDIPYCIIKSKGRLGTLVHQKNA
AVVCLTAVNKEDESKLNNLKSNFRSQFNEGFQRKWGGGIMGLKTQRKLEK
RQQAIEAELAKKAQY*
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mRNA from alignment at H-paniculata_contig1719:13867..17286-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1719.4006.1 ID=mRNA_H-paniculata_contig1719.4006.1|Name=mRNA_H-paniculata_contig1719.4006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3420bp|location=Sequence derived from alignment at H-paniculata_contig1719:13867..17286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAACTTCCGCATCGGCCGCGACATCCAGGTATCGTGATCTATTGTGG
CCATGGGCATGCAGGGGTACCAGAAACCAGCACTTGGCATGAAACGACAG
ATGCACACGAGCCATGTGCTGGAGGTTTTCCTCATGCCAGGATGAGCGTG
CCCCTATTTTTCGATGTGCGATTCGAGATGACCTTTGAGAGTACGCATTC
CGGACGCGAAATTACGCCGCAGTCCGCTTCCCTCTTCCTTCCCGGCTGTA
TTCGCCCCTCGGTTCCCTCCCGTACCTTATTGTCATCACTTCCTCGGATT
GTCGCAATTTGGATGAACCGAGAGAAGGCGATGCATGACGGGGTGTGTGT
GAGGCAAAATGTTACACGAATTGCCGGGCAGGGTCGGTGAGGGAAGTGGA
CAGCGGTGTCCTCGGGCTAGAGAGCTTTTTTGAAGAAAGTTTTAGCGACG
ATGCCACCGCGCCGTGATGATAAAAAATATTCGGTGGTTTTTAGCGCCTT
TTGAGCCCCAGCGTTATGACATAAATACGGGGCTTTTTTCGAGCTTGGGT
CTGCCTGGTGAGGCGCACCTACTGGCGTATTAGGCGAGTTACGGCCACTT
CAAGGTTGTTTCACTTGAACGCAAGTGGATCTCTGGCCAGTGTACTTGTT
ATCTATTTATGGAATGCCAGTATTCCTCTGAGCACGCGATTAGCGGGTAA
TTCCGACAAATCGCGGTTGTGGTTTATGGGAATTCTTCGAGTGCTATGGG
TCATGTTCGAATGCACTCGGGAAGATACTGGTCGCCTAGTAAGGTGTACT
GAGCGGGAAATCGCGATTTGAAATTCACAGCGCATTGCCTGCCCTAGTGA
AACTCAGGTCCATCTAACCGTGGAGAATATGAAGCCTGTTGTCACAGTCA
CGCCATGGTTGGTTTCAACCGCATTTTACGTATTCTCGAGCGGCAGGGTT
GCCATTCTTCAACCTCCCCGTTCTGCGCACTAAAGCAAGACTCACATTTA
TTTGTCCCACCTGGCTCGCATATCTGAACAACGTCGATGATCATGTCGTT
TATTATGTCTACAGCCCAAGGTGGATCTGTCTCGTTTCGTCAAGTGGCCC
CGCTACATCCGCCTTCAGCGCCAGAAGAAGGTATTATTGTGGGAGAATTC
TCGAAATTTTTCCGCTCGCCACCTATGGTGTCCTGAGCTGTTGAATTTGG
TCTAACGAGTTCATGTACCGATTTTATTTGATACCTTCAGCATATGACTG
CGTGCCTCGCCGACGTGCACATCGATGGAATCACACCGTCAAAGGTTTCG
GACTGTTGAGTTGGCTTCAAAGCTCATATCCGCGTTGTTATTCACGGTTG
TTGCGCAGATTCTGATCCAGCGTCTGAAGGTCCCACCGAGTGTGAACCAG
TTCAGCAAGTGTCTCGACAAGAATCAGGTCGGTCCTATTTGCAGATTATT
CGCTGGTGATGAAGTGGTATAAATCGTCTGTAGCGGGTGCGACAGGCCGT
CAAATGGTACGTCCAGGGTGCCGATCGTAAATGTGGGGTGACCGCCGTAT
TACAATGCTGGCCTTAATCCCCGTCTCTTGCGGCACATCTGCCGTCATCT
TGTCATAATACTCGATAGGCCACTGAGCTGCTCAAGCTTTTGATGAAGTA
CCAGCCAGAAGATAAGAAGGCGAAGCACCTACGGTTGAAGGAAATTGCCG
CTGCAAAAGAGGCCGGAAAGACCCCTGCCCCTTCCAGGGCACCCAAGGTT
TGTCTTATCTCCGATACTTGACGGACTTCGGCTTGAAATTCGCGTTAGCA
CACTTGATGTTTAGATGATGTCTACGGGTTTCTTTTCTATTAGTATTGGG
CTGGTACAGTACAAGGAAAGGAAGATGGTCCTTCGGCCAGGTACTCGTGC
GATTGCTGATGGGAGATGGTCAGCTGTGTACAGGTAGCATGGGCGATGAA
ATCAAACGTTGTATGTCATACTGAAAATGAAGAGTGAGATACCACCGGTC
CAAACCCATTGGGGGTGGGCTTATAATGACCCCAAAGCCCGCCCCTAAGA
CGAGACACGGGAGATGAAAGTGCGCTGAATCTTAATTGCCGGGGCCTTTA
CAACGCATCATATGATCTGGTAGTGCCCTCTAGCACCAGCGGCAAATTCT
GTATATCTACATGTTCTTCAGGTTTCATGTTGTACGAAGTGTCTGGCGTT
TTGACGTTCATGCACCGAAAACACCTTCGACCCGTCGGTGATGGACCGGG
ATGATGTCAGTAGCATATTCCATCTCGGGGCAGCTTGTCGAGTCAACAAT
ATAGACCCAGGCTTGTGCCATTGTGAGCAGAAGTGTGTGTACATATTCAT
TTCAACGAGTACTTCACGTGAAAAGTCGTGACCGTCGTTTTCGGATATTT
TGTCGATACCAGGTGCTCAAGTTCGGGTTGAAGCACGTAACCACCTTGAT
CGAGGAACAGAAGGCGTCGCTCGTGGTGATCGCACACGATGTCAACCCCA
TCGAGCTTGTTGTGTGGCTGCCTGCCCTCTGTCGCAAAATGGATATTCCC
TACTGTATCATCAAGAGCAAGGTAAGGGTCATGTCATGCTGTGCGGTGAT
GAGGTCAACTTGACACTCGCCATTAACCGTACCGCTGAATATTTTCAATT
TGTGCTTGGTATCATGTCATGTTGGCTACAGGTGTGGTCGTGGAACTCCA
TGATATGTCCCTAAGATCGAAACTCCATTTGAAACACTTGACGTCTGACT
CGACATTTGTTCATCGTGATACGTTGAACTTGTTCAGGGTCGCCTTGGTA
CCCTGGTGCACCAGAAGAATGCCGCCGTTGTGTGCTTGACTGCCGTCAAC
AAGGAGGACGAGAGTAAGCTGAACAACCTCAAGTCCAACTTCAGGTCACA
GTTCAACGAGGGCTTCCAGAGGAAGTGGGGTGGTGGTATCATGGGTCTCA
AGACTCAGCGCAAGCTTGAGAAGAGGCAGCAGGCAATTGAGGCCGAGCTT
GCCAAGAAAGCCCAGTACTAAGTACAATCGTCAGATGATTTTTTTGTGAT
ACTTGTCGCGAAGAATGATGTTGATTAGTACGCTATTTGGACAGGGTTGT
TCACTTCGAGGAAACGCGTGACATGTCCTGTAGAGTCATTTGACATGTGG
CTTTTTCACAGTTTTGTACAACGTGCAATTCTGGGAGGGATTGTTGATGA
GGCGAGGTAGTGTGCTCACGTGAGCGAAAGGGGGCTAATGAAACAGATAA
AACAAATATGTCGCTTGAAATTTCACGTGTGGAAAGGACACTTCCGAGAA
ACACTGTCCGCATGAGCAACGAGAATATGTTGACATCATGTGAACATTAG
AAGCGAAAAGTAGCACATGCAGATCGTCTTCAAAAACGGGAAAACTGACC
TAATTTAACAAACACGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1719:13867..17286-

>mRNA_H-paniculata_contig1719.4006.1 ID=mRNA_H-paniculata_contig1719.4006.1|Name=mRNA_H-paniculata_contig1719.4006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig1719:13867..17286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTACCAGCCAGAAGATAAGAAGGCGAAGCACCTACGGTTGAAGGA
AATTGCCGCTGCAAAAGAGGCCGGAAAGACCCCTGCCCCTTCCAGGGCAC
CCAAGATGAAGTACCAGCCAGAAGATAAGAAGGCGAAGCACCTACGGTTG
AAGGAAATTGCCGCTGCAAAAGAGGCCGGAAAGACCCCTGCCCCTTCCAG
GGCACCCAAGGTGCTCAAGTTCGGGTTGAAGCACGTAACCACCTTGATCG
AGGAACAGAAGGCGTCGCTCGTGGTGATCGCACACGATGTCAACCCCATC
GAGCTTGTTGTGTGGCTGCCTGCCCTCTGTCGCAAAATGGATATTCCCTA
CTGTATCATCAAGAGCAAGGTGCTCAAGTTCGGGTTGAAGCACGTAACCA
CCTTGATCGAGGAACAGAAGGCGTCGCTCGTGGTGATCGCACACGATGTC
AACCCCATCGAGCTTGTTGTGTGGCTGCCTGCCCTCTGTCGCAAAATGGA
TATTCCCTACTGTATCATCAAGAGCAAGGGTCGCCTTGGTACCCTGGTGC
ACCAGAAGAATGCCGCCGTTGTGTGCTTGACTGCCGTCAACAAGGAGGAC
GAGAGTAAGCTGAACAACCTCAAGTCCAACTTCAGGTCACAGTTCAACGA
GGGCTTCCAGAGGAAGTGGGGTGGTGGTATCATGGGTCTCAAGACTCAGC
GCAAGCTTGAGAAGAGGCAGCAGGCAATTGAGGCCGAGCTTGCCAAGAAA
GCCCAGTACTAAGGTCGCCTTGGTACCCTGGTGCACCAGAAGAATGCCGC
CGTTGTGTGCTTGACTGCCGTCAACAAGGAGGACGAGAGTAAGCTGAACA
ACCTCAAGTCCAACTTCAGGTCACAGTTCAACGAGGGCTTCCAGAGGAAG
TGGGGTGGTGGTATCATGGGTCTCAAGACTCAGCGCAAGCTTGAGAAGAG
GCAGCAGGCAATTGAGGCCGAGCTTGCCAAGAAAGCCCAGTACTAA
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