mRNA_H-paniculata_contig17184.4004.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17184.4004.1
Unique NamemRNA_H-paniculata_contig17184.4004.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: A0A6H5KM67_9PHAE (Histidine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM67_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.040e-47
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:    1 QMRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNR 276
            QMRVREQ FTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLA++ VGNIKRFHIAKV  R++
Sbjct:  240 QMRVREQAFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGVGNIKRFHIAKVYRRDQ 331
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: D7G588_ECTSI (Histidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G588_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.240e-46
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:    1 QMRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNR 276
            QMRVREQ FTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLA++ VGNIKRFHIAKV  R++
Sbjct:  516 QMRVREQAFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGVGNIKRFHIAKVYRRDQ 607
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: A0A835Z9D3_9STRA (AA_TRNA_LIGASE_II domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D3_9STRA)

HSP 1 Score: 166 bits (420), Expect = 7.340e-46
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    1 QMRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNR 276
            QMRVREQ F AIR VFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLA+N+VGNIKRFHIAKV  R++
Sbjct:  521 QMRVREQAFEAIRRVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALNSVGNIKRFHIAKVYRRDQ 612
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: B8CDX2_THAPS (Histidine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDX2_THAPS)

HSP 1 Score: 160 bits (405), Expect = 2.490e-45
Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:    1 QMRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNR 276
            QM +R++ FT IR VFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFAR+LAVNAVGNIKRFHI KV  R++
Sbjct:   18 QMSIRDKAFTIIRRVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFLAVNAVGNIKRFHIGKVYRRDQ 109
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: A0A7S2LH49_9STRA (Histidine--tRNA ligase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LH49_9STRA)

HSP 1 Score: 160 bits (405), Expect = 9.650e-44
Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:    1 QMRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNR 276
            QM +R++ FT IR VFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFAR+LAVNAVGNIKRFHI KV  R++
Sbjct:  490 QMAIRDKAFTIIRRVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFLAVNAVGNIKRFHIGKVYRRDQ 581
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: A0A7S1UVS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UVS9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.170e-43
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:    1 QMRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNR 276
            QMR+R+Q F  IR VF+ HGAVEIDTPVFELK+TLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFAR+LA+N+VGNIKR+HI KV  R++
Sbjct:  238 QMRIRQQAFDIIRRVFQSHGAVEIDTPVFELKDTLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFLALNSVGNIKRYHIGKVYRRDQ 329
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: A0A7S1B383_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B383_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.580e-43
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:    1 QMRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNR 276
            QM +R+Q F  IR VF+RHGAVEIDTPVFELKETLTGKYGEDSKLIY+LADQGGELLALRYDLTVP AR+LA+N+VGNIKRFHI KV  R++
Sbjct:   20 QMMIRDQAFQIIRRVFRRHGAVEIDTPVFELKETLTGKYGEDSKLIYNLADQGGELLALRYDLTVPLARFLALNSVGNIKRFHIGKVYRRDQ 111
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: A0A8B9C8J7_9AVES (AA_TRNA_LIGASE_II domain-containing protein n=2 Tax=Anatidae TaxID=8830 RepID=A0A8B9C8J7_9AVES)

HSP 1 Score: 145 bits (367), Expect = 6.630e-43
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    4 MRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRN 273
            M +RE+VF+AI N FKRHGA  IDTPVFELKETLTGKYGEDSKLIYDL DQGGELL+LRYDLTVPFARYLA+N + NIKR+HIAKV  R+
Sbjct:    1 MAIRERVFSAIINCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKITNIKRYHIAKVYRRD 90
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: K0RV05_THAOC (Histidine--tRNA ligase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RV05_THAOC)

HSP 1 Score: 157 bits (397), Expect = 9.910e-43
Identity = 77/92 (83.70%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:    1 QMRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNR 276
            QM +R+Q F+ IR VF RHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGE+LALRYDLTVPFAR+LAVN+VGNIKRFHI KV  R+R
Sbjct:  386 QMAIRQQAFSIIRRVFLRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGEMLALRYDLTVPFARFLAVNSVGNIKRFHIGKVYRRDR 477
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BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Match: A0A7S2RAZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RAZ5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.330e-42
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:    1 QMRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNR 276
            QM +R++ FT IR VF+ HGAVEIDTPVFELK+TLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFAR+LA+N VGNIKRFHI KV  R++
Sbjct:  259 QMMIRDKAFTIIRRVFRSHGAVEIDTPVFELKDTLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFLALNNVGNIKRFHIGKVYRRDQ 350
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17184.4004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM67_9PHAE4.040e-4791.30Histidine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G588_ECTSI1.240e-4691.30Histidyl-tRNA Synthetase Similar to Histidine Ammo... [more]
A0A835Z9D3_9STRA7.340e-4690.22AA_TRNA_LIGASE_II domain-containing protein (Fragm... [more]
B8CDX2_THAPS2.490e-4585.87Histidine--tRNA ligase n=1 Tax=Thalassiosira pseud... [more]
A0A7S2LH49_9STRA9.650e-4485.87Histidine--tRNA ligase n=1 Tax=Skeletonema marinoi... [more]
A0A7S1UVS9_9STRA3.170e-4380.43Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1B383_9STRA4.580e-4380.43Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A8B9C8J7_9AVES6.630e-4380.00AA_TRNA_LIGASE_II domain-containing protein n=2 Ta... [more]
K0RV05_THAOC9.910e-4383.70Histidine--tRNA ligase (Fragment) n=1 Tax=Thalassi... [more]
A0A7S2RAZ5_9STRA1.330e-4280.43Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17184contigH-paniculata_contig17184:1135..1966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue3.7e-39
Seed eggNOG ortholog2880.D7G588
Preferred nameHARS
KEGG rclassRC00055,RC00523
KEGG koko:K01892,ko:K06675
KEGG ReactionR03655
KEGG Pathwayko00970,ko04111,map00970,map04111
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000166,GO:0002119,GO:0002164,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004821,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048468,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Histidyl-trna synthetase
EggNOG OGsCOG0124@1,COG2986@1,KOG0222@2759,KOG1936@2759
EC6.1.1.21
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03036
Exons2
Model size282
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17184.4004.1prot_H-paniculata_contig17184.4004.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17184 1135..1963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929356.13463-CDS-H-paniculata_contig17184:1134..13171622929356.13463-CDS-H-paniculata_contig17184:1134..1317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17184 1135..1317 -
1691480828.3109999-CDS-H-paniculata_contig17184:1134..13171691480828.3109999-CDS-H-paniculata_contig17184:1134..1317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17184 1135..1317 -
1622929356.3130448-CDS-H-paniculata_contig17184:1867..19631622929356.3130448-CDS-H-paniculata_contig17184:1867..1963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17184 1868..1963 -
1691480828.3244052-CDS-H-paniculata_contig17184:1867..19631691480828.3244052-CDS-H-paniculata_contig17184:1867..1963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17184 1868..1963 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929356.3318677-UTR-H-paniculata_contig17184:1963..19661622929356.3318677-UTR-H-paniculata_contig17184:1963..1966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17184 1964..1966 -
1691480828.3337505-UTR-H-paniculata_contig17184:1963..19661691480828.3337505-UTR-H-paniculata_contig17184:1963..1966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17184 1964..1966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17184.4004.1

>prot_H-paniculata_contig17184.4004.1 ID=prot_H-paniculata_contig17184.4004.1|Name=mRNA_H-paniculata_contig17184.4004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MRVREQVFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLAD
QGGELLALRYDLTVPFARYLAVNAVGNIKRFHIAKVGDRNRA*
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mRNA from alignment at H-paniculata_contig17184:1135..1966-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17184.4004.1 ID=mRNA_H-paniculata_contig17184.4004.1|Name=mRNA_H-paniculata_contig17184.4004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=832bp|location=Sequence derived from alignment at H-paniculata_contig17184:1135..1966- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGCGAGTGCGCGAGCAAGTTTTTACTGCCATCCGAAACGTATTCAA
ACGGCACGGGGCGGTGGAGATCGACACTCCCGTCTTCGAACTGAAAGAGG
TGCGGGCGGGCGGGCGGGCGCGGCGTCGAGCCGAACGGCGAATGCGTGTG
TGTGTGGCGGCGAAGATGTCTTGTTAATCATGGTACATATAACAGGCATC
GATATGCTCGAGGGACGCTGTTTCGAGAGGAAAAAAGCAGGCATCTGACA
AACAAAAGCAGTAACACGAACAATAACATGCTAATATCGAGAGAGAGAGA
GAGAGCGCTGCAATGGTTTTTTTGTGGACTGAAGCATTTTATGTCTGTCT
GTATCTGTGTCTCGACTCTTTTTTATCTTGAATCACATGTATGAAATATA
CCAGGATAGCAGTAAGCTAGAGTTGAATGTGGGGGGGGAATTTTGACGGA
CCTCCCCTGAAGCGGCGTTCGAGATGGTAAAATTGTGTGCGTGTGTGTGT
GTGTGTGTATTTATTGTGAGTTACGATAAGCCTGTTGCTGCTCTTGCTGT
TCTTATTTTTGTTTTATGGTGATAATGGATGATTATAGAACCTGACTTGC
TGGGGTATTGGTCGCTGGTGGTCAATCGGTGGCTTTCCATTCTTGACAGA
CTCTTACCGGAAAGTACGGTGAGGACTCGAAGCTAATCTACGACTTGGCA
GACCAGGGGGGAGAGCTGTTGGCCCTGCGCTACGACCTGACCGTGCCGTT
CGCGAGGTACCTGGCTGTCAACGCCGTTGGGAACATCAAGCGATTCCATA
TAGCAAAGGTGGGGGATCGCAATCGAGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17184:1135..1966-

>mRNA_H-paniculata_contig17184.4004.1 ID=mRNA_H-paniculata_contig17184.4004.1|Name=mRNA_H-paniculata_contig17184.4004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig17184:1135..1966- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGTGCGCGAGCAAGTTTTTACTGCCATCCGAAACGTATTCAAACG
GCACGGGGCGGTGGAGATCGACACTCCCGTCTTCGAACTGAAAGAGATGC
GAGTGCGCGAGCAAGTTTTTACTGCCATCCGAAACGTATTCAAACGGCAC
GGGGCGGTGGAGATCGACACTCCCGTCTTCGAACTGAAAGAGACTCTTAC
CGGAAAGTACGGTGAGGACTCGAAGCTAATCTACGACTTGGCAGACCAGG
GGGGAGAGCTGTTGGCCCTGCGCTACGACCTGACCGTGCCGTTCGCGAGG
TACCTGGCTGTCAACGCCGTTGGGAACATCAAGCGATTCCATATAGCAAA
GGTGGGGGATCGCAATCGAGCGTGAACTCTTACCGGAAAGTACGGTGAGG
ACTCGAAGCTAATCTACGACTTGGCAGACCAGGGGGGAGAGCTGTTGGCC
CTGCGCTACGACCTGACCGTGCCGTTCGCGAGGTACCTGGCTGTCAACGC
CGTTGGGAACATCAAGCGATTCCATATAGCAAAGGTGGGGGATCGCAATC
GAGCGTGA
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