mRNA_H-paniculata_contig17178.4001.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17178.4001.1
Unique NamemRNA_H-paniculata_contig17178.4001.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: D8LL60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL60_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 8.290e-116
Identity = 177/221 (80.09%), Postives = 193/221 (87.33%), Query Frame = 2 
Query:   50 GSTLFAHGQFMAKCDLVLASQSPRRREIVGLMGLADRVRVVVSEFEENLDKSTFEDARDYALANAEGKAREVAGRVLGDSTDSINRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFTGAVGKAEPAVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAALIQHGKA 712
            G TL A G FM+KCDLVLASQSPRR EIVG+MGLADRVRVVVSEFEENLDKS+F+D RDYA+ANAEGKAREVA R L D+ +     P+VVVGSDTIV+LDG ILEKP DDEHAFSMLSSLSGR+HLVHSGVSIFT  +GK + AVSFCETT+VLF  LS EEIRAYIRTREPMDKSGSYGIQG GGQFVRKVDGCYFNVMGFPMHAFSR +A +I+ GKA
Sbjct:   20 GGTLLAQGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPRDYAIANAEGKAREVASRALLDA-EGEGAEPIVVVGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA 239
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: A0A836CIZ2_9STRA (Inosine triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ2_9STRA)

HSP 1 Score: 261 bits (666), Expect = 3.720e-82
Identity = 137/221 (61.99%), Postives = 166/221 (75.11%), Query Frame = 2 
Query:   47 QGSTLFAHGQFMAKCDLVLASQSPRRREIVGLMGLADRVRVVVSEFEENLDKSTFEDARDYALANAEGKAREVAGRVLGDSTDSINRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFTGAVGKAEPAVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAALIQHGK 709
            Q STL AH  FM  C +VLAS+SPRR+EI GLMGL +R+ V+VSEFEE+L K+ F    DYA A A+ KA EVA +VL   +D  NR P +VVGSDTIVELDG ILEKP D +HAF ML SLSGR+HLVHSGV++FTGA G A+PA  + +TT V F  +S +EI AY+ + EPMDK+G+YGIQG GGQFV+ V+GCYFNVMGFPM  F   +A LI+ GK
Sbjct:    8 QHSTLLAHKAFMDGCRVVLASKSPRRKEIFGLMGLDERLEVIVSEFEEDLRKADFPQPGDYAAATAKFKAAEVAAKVLPARSD--NR-PTIVVGSDTIVELDGTILEKPDDAQHAFRMLKSLSGRRHLVHSGVAVFTGACGSAQPAACWYDTTSVEFLAMSDDEIWAYVESGEPMDKAGAYGIQGLGGQFVKGVEGCYFNVMGFPMSKFGTCLAKLIESGK 225
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: A0A7S2UUT0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUT0_9STRA)

HSP 1 Score: 224 bits (572), Expect = 3.790e-67
Identity = 130/220 (59.09%), Postives = 156/220 (70.91%), Query Frame = 2 
Query:   83 AKCDLVLASQSPRRREIVGLMGLADR--VRVVVSEFEENLDKSTFEDARDYALANAEGKAREVAGRVLGDSTDSINRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFT-------GAVGK-AEP-AVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAALIQHGK 709
            + C +VLASQSPRRREI  +MG+ +   + VVVS FEENLDKS+F++   YA  NAE KA++V  ++  D  +S +   + VV +DTIV+L G ILEKP+D++HAF MLS LSG  HLVHSGV++FT       GA  +  EP  VSF ETTEV    LS +EI AYIRT EPMDKSGSYGIQG GGQFV+ V GCYFNVMGFPMH FS  MA LIQ  K
Sbjct:   73 SSCGIVLASQSPRRREIFDMMGINNSFDINVVVSNFEENLDKSSFDNPGIYAQINAECKAQDVYNQIRND--ESRHAKSLAVVAADTIVDLRGKILEKPSDEQHAFQMLSELSGTSHLVHSGVALFTRPPVANSGASSEDIEPNIVSFYETTEVEIVPLSEDEIWAYIRTGEPMDKSGSYGIQGIGGQFVKGVRGCYFNVMGFPMHRFSAAMAELIQSKK 290
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: A0A7S2S2U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U2_9STRA)

HSP 1 Score: 221 bits (562), Expect = 4.250e-66
Identity = 120/213 (56.34%), Postives = 152/213 (71.36%), Query Frame = 2 
Query:   74 QFMAKCDLVLASQSPRRREIVGLMGLADRVR--VVVSEFEENLDKSTF--EDA-RDYALANAEGKAREVAGRVLGDSTDSINRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFTGAVGKAEPAVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAALI 697
            + +++C LVLAS+SPRRREI  LMGL DRV   +VVS+FEE+L KS F  ED  + Y  A A GKAR VAG++    + + +  PV VVG+DTIV+LDG +LEKP+ ++ A + L  LSGR H VHS V+IF+   G AEP +SFCETT V F  LS  EI AY+ + EPMDK+GSYGIQG GGQFV +++GCYFNVMG PM  FS  +A L+
Sbjct:   40 EALSRCRLVLASKSPRRREIFDLMGL-DRVGYDIVVSDFEEDLPKSDFPGEDGPQRYCEATATGKARSVAGKIFSQGSGTPSANPVFVVGADTIVDLDGEVLEKPSSEQDAAATLRRLSGRAHFVHSSVAIFSSRHGVAEPVISFCETTRVKFGQLSDAEISAYVASGEPMDKAGSYGIQGLGGQFVDQIEGCYFNVMGLPMRRFSTAIAGLV 251
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: A0A7S1TQE1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQE1_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.870e-61
Identity = 115/216 (53.24%), Postives = 141/216 (65.28%), Query Frame = 2 
Query:   56 TLFAHGQFMAKCDLVLASQSPRRREIVGLMGLADRVRVVVSEFEENLDKSTFEDARDYALANAEGKAREVAGRVLGDSTDSINRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFTGAVGK--AEPAVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAALI 697
            TL   G        VL S SPRR EI GLMGL  +  +VVS F E+L KS+F  A  YA   A  KAREVAGR+L D+       P V+VGSDT+VE+DG +LEKP D E A +ML  +SGR H VHSGV++F+   G+    P ++F ETTEV F  L+  +I  Y+ +REPMDK+G YGIQG GGQ V  + GCYFNVMGFPMH FS+ MA L+
Sbjct:    4 TLLGAGDAARSVRWVLGSASPRRAEIFGLMGL--QPEIVVSGFAEDLAKSSFATAAAYAEGTATEKAREVAGRLLPDA----GAQPTVIVGSDTVVEIDGDVLEKPGDVEEAKAMLRRMSGRNHFVHSGVAVFSNLGGRDAGAPTMTFAETTEVTFVELTELDIENYVASREPMDKAGGYGIQGLGGQMVCGLSGCYFNVMGFPMHRFSKSMAELL 213
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: W7UAS6_9STRA (Acetylserotonin o-methyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAS6_9STRA)

HSP 1 Score: 209 bits (531), Expect = 5.050e-61
Identity = 117/224 (52.23%), Postives = 148/224 (66.07%), Query Frame = 2 
Query:   77 FMAKCDLVLASQSPRRREIVGLMGLADRVRVVV-SEFEENLDKSTFEDARDYALANAEGKAREVAGRVLGDSTDS----------INRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFTGAVGKAE-----PAVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAALIQ 700
            F  K +L+LAS+SPRR+EI+ LMG   +  VV+ S+F E+LDK  F +  DYA  NAE KA+EVA ++ G S+              +   +V+GSDTIV+ DG ILEKP D +HA++MLSSLSGR HLVHSGV+I++    K+      P VSFCET  V FA LS EEI  YIR+ EPMDK+G YGIQG GGQ VR ++GCYF VMG PMH  S  +A   +
Sbjct:   65 FKTKVNLILASKSPRRQEILQLMGFDSKDFVVLPSDFPEDLDKRNFINPADYAQKNAECKAQEVATKLFGGSSSGDVGKVGGQRDAGKKTTIVIGSDTIVDRDGIILEKPEDAQHAYAMLSSLSGRTHLVHSGVAIYSSKGPKSGDGIPLPVVSFCETARVDFAPLSEEEIWNYIRSGEPMDKAGGYGIQGLGGQVVRGIEGCYFTVMGMPMHKLSVALAQFAE 288
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: A0A7S0BNY9_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNY9_9RHOD)

HSP 1 Score: 203 bits (517), Expect = 7.640e-60
Identity = 115/220 (52.27%), Postives = 143/220 (65.00%), Query Frame = 2 
Query:   47 QGSTLFAHGQFMAKCDLVLASQSPRRREIVGLMGLADRVRVVVSEFEENLDKSTFEDARDYALANAEGKAREVAGRVLGDSTDSINRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFTGAVGKAEPAVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAALIQHG 706
            QG  +  H  +++   +VLASQSPRRREI+ L+ L  +  VVVS FEENLDKS F    +Y L NA  KA EVA R++G  T      P +V+GSDT+V LD  ILEKP  +  AF+ML SLS R H V + V++F     K   + SF E T V FA L+ + I  YIRTREPMDK+G+YGIQG GG  V+ VDGCYFNVMGFPMH F+  +A L+  G
Sbjct:   12 QGFMIVQHLPYLSSKRIVLASQSPRRREILDLLEL--KHDVVVSGFEENLDKSMFSHPSEYVLENARRKAEEVAKRLIGSDTP-----PDLVIGSDTVVVLDNKILEKPLSEAEAFTMLKSLSNRNHTVLTSVALFLKDAKKC--SASFYEATNVRFAELNDDLIWEYIRTREPMDKAGAYGIQGIGGSLVKGVDGCYFNVMGFPMHRFATELAELVDRG 222
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: A0A0G4GLH8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLH8_VITBC)

HSP 1 Score: 203 bits (516), Expect = 9.360e-59
Identity = 111/204 (54.41%), Postives = 137/204 (67.16%), Query Frame = 2 
Query:   95 LVLASQSPRRREIVGLMGLADRVRVVVSEFEENLDKSTFEDARDYALANAEGKAREVAGRVLG----DSTDSINRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFTGAVGKAEPAVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAAL 694
            ++LAS+SPRR+EI GLMGL   V V  S F E+LD   F   + YA ANA  KA EVA   LG    D + +   A  VV+G+DTIV+LDG ILEKP + + A SMLS +SGR H VH+GV+IFT   G AEP   F E+T+V FA LS  EI +Y+ + EPMDK+G YGIQG GG FV  ++GCYFNVMG PMH  S+ +A L
Sbjct:   87 VILASKSPRRKEICGLMGLD--VTVYPSTFAEDLDHGAFSSPQSYAAANAAHKAAEVARGALGAGGDDESSTCPPAADVVIGADTIVDLDGVILEKPANHDDAVSMLSRMSGRCHAVHTGVAIFTRRAGPAEPVAHFVESTKVKFAPLSRSEIDSYVASGEPMDKAGGYGIQGLGGMFVESIEGCYFNVMGLPMHHLSKVLAQL 288
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: A0A1X6P3D6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3D6_PORUM)

HSP 1 Score: 200 bits (509), Expect = 9.860e-59
Identity = 109/207 (52.66%), Postives = 137/207 (66.18%), Query Frame = 2 
Query:   95 LVLASQSPRRREIVGLMGLADRVRVVVSEFEENLDKSTFEDARDYALANAEGKAREVAGRVLGDSTDSINRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFTGAVGKA--EPAVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAALIQHGK 709
            +VLAS SPRRREI+ ++GLA  V    S FEENLDK  F    +YA  NA  KA  V   +         R P +V+GSDTIV +DG ILEKP  +  A+ ML++LSGR+H V S V++FT +  +   +PA  FCE T V FA LSPE I AYIRT EPMDK+GSYGIQG GG F+  + GCY+NVMGFP+HAF+  +A L+  G+
Sbjct:   15 IVLASGSPRRREILTMLGLAHEVHA--SAFEENLDKGAFPTPAEYAKTNASSKAAAVVAELAAGG--GAGRCPDLVIGSDTIVVVDGRILEKPRSEAAAYEMLATLSGREHSVLSAVALFTPSRSEVRDKPATVFCEHTRVRFAPLSPETIAAYIRTGEPMDKAGSYGIQGVGGSFITGITGCYYNVMGFPLHAFTSAVARLLDAGE 217
[Close]
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Match: R7QNE7_CHOCR (Maf protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNE7_CHOCR)

HSP 1 Score: 195 bits (496), Expect = 5.480e-57
Identity = 109/203 (53.69%), Postives = 139/203 (68.47%), Query Frame = 2 
Query:   92 DLVLASQSPRRREIVGLMGLADRVRVVVSEFEENLDKSTFEDARDYALANAEGKAREVAGRVLGDSTDSINRAPVVVVGSDTIVELDGCILEKPTDDEHAFSMLSSLSGRKHLVHSGVSIFTGAVGKAEPAVSFCETTEVLFAILSPEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSRHMAALIQ 700
            ++VLASQSPRRREI+ LMGL      V S+FEENLDKS+F+  RDY +ANA GKA +VA       TD       +V+GSDT+V LDG +LEKP  +  AF ML+ LSGR+H V +GVS+    + K +   +F E T V FA LS + I AYI+T EPMDK+G+YGIQG GG  VR+++GCYF VMG PMHA +R +A L +
Sbjct:   13 NIVLASQSPRRREILTLMGLP--FTPVPSQFEENLDKSSFKSPRDYVMANAHGKAADVAA----SQTDYD-----LVIGSDTVVVLDGKVLEKPKSEGEAFRMLAQLSGRQHTVATGVSL----IAKGDTTRTFAEETSVWFAHLSDDVIGAYIKTGEPMDKAGAYGIQGRGGALVRRIEGCYFTVMGLPMHALAREIAELCK 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17178.4001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL60_ECTSI8.290e-11680.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CIZ2_9STRA3.720e-8261.99Inosine triphosphate pyrophosphatase-like protein ... [more]
A0A7S2UUT0_9STRA3.790e-6759.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2S2U2_9STRA4.250e-6656.34Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1TQE1_9STRA2.870e-6153.24Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7UAS6_9STRA5.050e-6152.23Acetylserotonin o-methyltransferase n=3 Tax=Monodo... [more]
A0A7S0BNY9_9RHOD7.640e-6052.27Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A0G4GLH8_VITBC9.360e-5954.41Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A1X6P3D6_PORUM9.860e-5952.66Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7QNE7_CHOCR5.480e-5753.69Maf protein n=1 Tax=Chondrus crispus TaxID=2769 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17178contigH-paniculata_contig17178:790..5506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score336.3
Seed ortholog evalue1.1e-89
Seed eggNOG ortholog2880.D8LL60
Preferred nameASMTL
KEGG rclassRC00055,RC00523
KEGG koko:K01868,ko:K06287
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
Ec32 ortholog descriptionMaf-like protein
Ec32 orthologEc-25_000130.1
EC6.1.1.3
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons6
Model size1280
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17178.4001.1prot_H-paniculata_contig17178.4001.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17178 869..4941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929355.7539513-UTR-H-paniculata_contig17178:789..8681622929355.7539513-UTR-H-paniculata_contig17178:789..868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17178 790..868 +
1691480828.130282-UTR-H-paniculata_contig17178:789..8681691480828.130282-UTR-H-paniculata_contig17178:789..868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17178 790..868 +
1622929355.8425574-UTR-H-paniculata_contig17178:4941..55061622929355.8425574-UTR-H-paniculata_contig17178:4941..5506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17178 4942..5506 +
1691480828.1997852-UTR-H-paniculata_contig17178:4941..55061691480828.1997852-UTR-H-paniculata_contig17178:4941..5506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17178 4942..5506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929355.7655632-CDS-H-paniculata_contig17178:868..9431622929355.7655632-CDS-H-paniculata_contig17178:868..943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 869..943 +
1691480828.1430287-CDS-H-paniculata_contig17178:868..9431691480828.1430287-CDS-H-paniculata_contig17178:868..943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 869..943 +
1622929355.7754252-CDS-H-paniculata_contig17178:1725..18331622929355.7754252-CDS-H-paniculata_contig17178:1725..1833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 1726..1833 +
1691480828.1513917-CDS-H-paniculata_contig17178:1725..18331691480828.1513917-CDS-H-paniculata_contig17178:1725..1833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 1726..1833 +
1622929355.7860434-CDS-H-paniculata_contig17178:2790..28741622929355.7860434-CDS-H-paniculata_contig17178:2790..2874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 2791..2874 +
1691480828.1602361-CDS-H-paniculata_contig17178:2790..28741691480828.1602361-CDS-H-paniculata_contig17178:2790..2874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 2791..2874 +
1622929355.8009686-CDS-H-paniculata_contig17178:3706..39151622929355.8009686-CDS-H-paniculata_contig17178:3706..3915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 3707..3915 +
1691480828.1716096-CDS-H-paniculata_contig17178:3706..39151691480828.1716096-CDS-H-paniculata_contig17178:3706..3915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 3707..3915 +
1622929355.8131585-CDS-H-paniculata_contig17178:4521..45991622929355.8131585-CDS-H-paniculata_contig17178:4521..4599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 4522..4599 +
1691480828.1806328-CDS-H-paniculata_contig17178:4521..45991691480828.1806328-CDS-H-paniculata_contig17178:4521..4599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 4522..4599 +
1622929355.8274088-CDS-H-paniculata_contig17178:4859..49411622929355.8274088-CDS-H-paniculata_contig17178:4859..4941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 4860..4941 +
1691480828.190235-CDS-H-paniculata_contig17178:4859..49411691480828.190235-CDS-H-paniculata_contig17178:4859..4941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17178 4860..4941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17178.4001.1

>prot_H-paniculata_contig17178.4001.1 ID=prot_H-paniculata_contig17178.4001.1|Name=mRNA_H-paniculata_contig17178.4001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MAKCDLVLASQSPRRREIVGLMGLADRVRVVVSEFEENLDKSTFEDARDY
ALANAEGKAREVAGRVLGDSTDSINRAPVVVVGSDTIVELDGCILEKPTD
DEHAFSMLSSLSGRKHLVHSGVSIFTGAVGKAEPAVSFCETTEVLFAILS
PEEIRAYIRTREPMDKSGSYGIQGAGGQFVRKVDGCYFNVMGFPMHAFSR
HMAALIQHGKA*
back to top

mRNA from alignment at H-paniculata_contig17178:790..5506+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17178.4001.1 ID=mRNA_H-paniculata_contig17178.4001.1|Name=mRNA_H-paniculata_contig17178.4001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4717bp|location=Sequence derived from alignment at H-paniculata_contig17178:790..5506+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCACGGGCACCAGCGCAACACCTTCTGCTGGGACGATCCCAGATCAAG
GGTCCACGTTATTCGCGCATGGGCAATTCATGGCGAAGTGTGACCTGGTA
CTTGCTAGTCAGAGCCCTCGACGCCGGGAAATCGTGGGACTAATGGGACT
CGCGGTGAGTTCACCCAACGTTCAGAACATGACAATCGTATTCATTCGTT
GGTTTGGTGTATAGGTTTTGGTTTGGATGACGACGGTATACATGTGCAGC
AACTTTACTTGGTCCGTGTCCTGGGCCATGACTTTACATCACGGTGTATT
TAACGTGGACGAAATATGTCACCCTGAGTTGCGCTGAGGTGGACGAATTT
CGCCACTCACATGAACGAATGATATCGCTGTGAGTTGATGTGACGGAATG
ATGACACATGTAATGCGGATGGAAAGGGATGCAAGTAGGTATGACAGTGC
TGGGTGTACGTGGTGATAACAAACGGAAAATTTTACTTTTATGGGTTTTG
GTATTTGTGCTTTCGAGCAATGTCAACCACGCAGAAATATGTGCGATTTT
CCACAAATTTCGTCTTTCAAAGCATATTCTGAAGGTGACGTCATCCATGC
TTAAAATTACGTTAATCTAAATATGACGCCATGACCGTCAATGACATCAC
TCGTCTAGAAAGGTTTTCAGCCAACTAGATATCTCATTCATATAGTGTTG
ACCAACAGGAAAACTGCGTGTAGGTTTTTTCTTCTCTTTGCAAAGAGCGA
TACCTGCTGTGCGTTATGTAGCACGGCCTTGCCTGCGCGGAGCGTGTTCA
GTCGTACTGTTGCTGCTGTACAATGTCTGATGTCACGTGTGTAGAACTCT
ACTCAGTATATGTGCTGTCATTCATAGCTTCTGTTGTAGCCTTGACTAGT
ACTCAACGCTTAGAGCAATCCCTTTTCTGCGGTCAGGATCGAGTACGCGT
GGTGGTGTCGGAATTCGAAGAGAATCTGGACAAGTCAACTTTTGAAGATG
CGCGAGACTACGCTCTTGCGAACGCCGAAGGGAAGGCACGAGAGGTGTGT
TGACGCATGGCGTCCAGCGTGAGTTTTGAGACCCTTCATCACTGGCGATA
TACCTGTAGATGATAGGAGACATGTCGCGGTTAACCTTGAGATAGAAGCA
ACAACGAGCAGACGGGGAAAAATGTAAATATGCGTTCACAGTGAAAACAA
GCGAAATCATTGCTATCATGGCGACCGTCGTTAAATATCCCCGTCAGCGC
ATAGGCCAGGACTTATGATGCATGAACTATGGTTGAAGGTTAGGATCTGT
CATGCTGCGGGTACATGCTTCGACTAGATGGACCAAGGACTTCATGAGGT
GTTGCGCTGCTGTCTGATGATGGGAGTCCAACCGTTTAGAAGGTTTTTCC
GAACTCTTTGCGCTTCTACTAGGCATTGCCTCATTATGCTCAGATTGTTT
TTTTTATGCTGCATGAATCTCGAAAAGCCATGCCCGTTTTGTGGAATTTA
TGCCCCGAGTATGCTTGCTTGATGGATTGCATGCTCGATTGATGGATGTT
ATGCTCGATTATGCTCCTAATTAGACATTGCCTCATTATGCTCAGGTTTG
CACGAAAACCAAAGCCCGTTTTGTGGAATTTATGGGTCGACTATACGTGG
ATTTTACAAGAATTCATGCTCAAATTTATGCTGGCATGATGAGGTAATGC
CTAGCTGCCACATGAATTGCGGGTTGGCATGATTTTACCTTCTGGTCTAA
CGCAACCAATAAATCAGCATCAACAGTCGTACGCAGCTATATCATCTATG
CCGCCGCAGTACAGACGGTCATGGGCATATCTTTGGTATGTACGTGATAT
GTAGAACGATCCGATCGAAGAAGCTTTGCCCGTCTACATTTCAAAGTCCA
GGTTGTCGTTTCAGAATCCAGGTTCCCCATAAAGTTTTTGTGTTTCAAAA
TGAAGGGAAGCAACTCAAACATGTCTATTTTTTCTTATATCTGACACCCA
GGTAGCAGGTCGTGTCCTGGGAGATTCAACTGACAGCATAAACCGGGCTC
CTGTGGTGGTCGTTGGGTCGGACACCATCGTGGAAGTAAGTTTACCTTGC
GCACGGTGGCATGATGACATGGATGGTGGTCGCGTGCTGCACTTTGAGCA
ATCTTTCACAGCTCGGACGAATGTTTGGTTTTTAAGTAATTAACACGCAG
CGGAACCGTCATTCCTTCGTGGTCAAAAGTAGAAATATCTGTGGAGGTGC
GCTAATACTCGAAAGTCGAACACTCCTTGAAGGTGTGCAGGATATCCATG
CTATCGATTTGTGGGTTTCGGAAGGCACCAGGTATCCTCGTGCTGGTATA
GTTCCAAAACCCGCGACATCCTTCATCGACGGATGAAGGACCTTCGTTCG
AGCTGTGCAATCTTCGACACCGATCCTCGTGCATCCTGCAGTAGACGTTT
TTATGGTTACCACATTTTGGATATGCGCGCATGAGCAATGTAGGGGAGTG
TGCGGTGACCGTTATTGACAGCCTTGGTTGCAAAATCGTCATGTTGTTGC
TCAAGAAGAGTTCGCCATGGACGGCTAGCTGTGTCTTCTCGTCAAAAATA
CGTGCGTTAGTCTAGAGTTGCTGCTGTTTACACTCACCATCTGATGTACC
AGACTCCAACGTATTCTACAGTCCTGCATTGCAGCATCTCAAACCGCGGC
CATCACACCATACCTAGAAAAAACTCTGCCACGTGCATCAAGCTCTCGAC
GTAAGACTTTGTTTGCACAACCATGCGTGTTTCTCCTCTACACCGCACAA
TGATAACGGGTCCTCACCATCCATCCTCCCACTCAGTCTTCCACCTACCC
TCCCACCTACCGTTCGACCTACCCTCCCACCTACCCTCCCACCGTCTCCC
TTTCAACACAAACGCAGTTAGACGGTTGCATCTTAGAAAAACCTACAGAC
GACGAGCACGCGTTCTCTATGCTGTCGAGTCTGAGTGGCCGAAAACACCT
CGTACATTCGGGCGTGTCCATATTTACTGGAGCGGTGGGGAAGGCTGAAC
CTGCGGTTAGCTTTTGCGAGACAACAGAGGTGCTTTTTGCTATTCTCTCA
CCTGAGGAAATTCGAGCATATATCCGGTAAGTCTCTTTCCCACCCCTCGG
CTTACGGTGCTTGTTTTGAAGCACGATAGAACCGTCTTAGCCATTTGTTT
TGCGTAGTTCAACGTTCGAGATTTGGCGAACAAGGTGCACCCCATCGCCC
AGTACAGTCGTGGGATTTGATGTATGGAGATTTGAGACTCTTCCCATTTA
CCGAGGACTGGCTGTACGGTAGAAATGTCTTCTTGGTGTTTGTGTGGGTT
TAGAAACGGTATTTATACCAGGCTTGTTCTTGGAATACATACCTGGCCGC
GCGTTCACCGCTTGGTGTGAGTTGGCGAACCAGACCAACGGATGTTCTCC
GCGTGCCCCCACTACGGTTGACCCGTCTGTGATTGTTTCTCGCGGCGTGG
ACCCTGAGCATACCCGATGATGTTTGCTGCACAGGGCACTACATTTATAC
GTAATGAGACATTGTAAGGCAAACAGTGTCCACGTATGCAAAGGCATCTC
CAAGTGAAGCTTCAGCTTGCTCCCTGTTGCAAATGTGACATATGCGTGCG
AAAGGAAGAATTATTGCTGCCTGTACACATTGTTTAGCGCGCGCCAACAG
TCCACTGAATTGTGCCGTTTCATCGTATCCAGAACACGGGAGCCCATGGA
CAAGTCTGGCTCTTATGGCATCCAGGGGGCAGGCGGACAATTTGTTCGCA
AAGTGGACGGGTAAGAGTATGGCGTGAAATGCACCATTGACTACGGGACG
TTCATCAGATAAGATACTGCTGCCGTACATACGACATCCCCCATGTGCCT
ACTGGCATATATAGTGCTCGGGAGTAGGAGGAGCAGGGCATAGTCACGGA
CGTCACCAAGAGAAAAAATTGCAGTATTTCAGTGTTTTGAAGAGCGCTCG
CTCGACAACTACATGAGCTCTAACCTCACAGTTATTGTACGGTTGTTATG
TTCGTGACGTACATGTCCAGGTGTTATTTCAACGTCATGGGTTTCCCGAT
GCACGCATTTTCACGGCACATGGCGGCGCTTATCCAGCATGGCAAAGCAT
GAGGAGGCACCAAGACGCCGGACTTGCGACCATACGGCATGCATGGCTTG
AATGATGCTGCAGCGTCAGTAACCCCATGTTCGACTGAAGTAACTATTTT
TTACAGAGAGGCCAACCCCGAAAATCTAAATATTGTGTACGTGATCACTT
GTATTGACATGTTTGATGCTACGTCTGTGAGTACCATCACGCATAACAAG
ACAACGAATACACACGCGACGATTATCGCTCGGGACAGTACTCTGGCGAG
ATGCTGGTGTCTACAACTTTTCCTCGCTCTTAATCGTGTTGCACTTGCCT
CAGTATCACCGCATAGATGGGGTGATGCAACTCAATACTATCGGCTGAAT
CCGGCAAGATAAACCAAAAATAATCTGCGGGTAATTTGCATTCGAGCTTT
GAGAATTTCGGCCTAATAATATGGGATAATCACATCGTGTTTAACCATTG
TTTTTTTGGTATGTTTATTTTGTTATTTTTTTCCAGTTCAAAGATCCATT
CGTATCAGGTGAAGTGATCAGGTGTAGAGATTTACTAATAACAGCCAATC
CTCCTAATTGGGGATCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17178:790..5506+

>mRNA_H-paniculata_contig17178.4001.1 ID=mRNA_H-paniculata_contig17178.4001.1|Name=mRNA_H-paniculata_contig17178.4001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig17178:790..5506+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGTGTGACCTGGTACTTGCTAGTCAGAGCCCTCGACGCCGGGA
AATCGTGGGACTAATGGGACTCGCGATGGCGAAGTGTGACCTGGTACTTG
CTAGTCAGAGCCCTCGACGCCGGGAAATCGTGGGACTAATGGGACTCGCG
GATCGAGTACGCGTGGTGGTGTCGGAATTCGAAGAGAATCTGGACAAGTC
AACTTTTGAAGATGCGCGAGACTACGCTCTTGCGAACGCCGAAGGGAAGG
CACGAGAGGATCGAGTACGCGTGGTGGTGTCGGAATTCGAAGAGAATCTG
GACAAGTCAACTTTTGAAGATGCGCGAGACTACGCTCTTGCGAACGCCGA
AGGGAAGGCACGAGAGGTAGCAGGTCGTGTCCTGGGAGATTCAACTGACA
GCATAAACCGGGCTCCTGTGGTGGTCGTTGGGTCGGACACCATCGTGGAA
GTAGCAGGTCGTGTCCTGGGAGATTCAACTGACAGCATAAACCGGGCTCC
TGTGGTGGTCGTTGGGTCGGACACCATCGTGGAATTAGACGGTTGCATCT
TAGAAAAACCTACAGACGACGAGCACGCGTTCTCTATGCTGTCGAGTCTG
AGTGGCCGAAAACACCTCGTACATTCGGGCGTGTCCATATTTACTGGAGC
GGTGGGGAAGGCTGAACCTGCGGTTAGCTTTTGCGAGACAACAGAGGTGC
TTTTTGCTATTCTCTCACCTGAGGAAATTCGAGCATATATCCGTTAGACG
GTTGCATCTTAGAAAAACCTACAGACGACGAGCACGCGTTCTCTATGCTG
TCGAGTCTGAGTGGCCGAAAACACCTCGTACATTCGGGCGTGTCCATATT
TACTGGAGCGGTGGGGAAGGCTGAACCTGCGGTTAGCTTTTGCGAGACAA
CAGAGGTGCTTTTTGCTATTCTCTCACCTGAGGAAATTCGAGCATATATC
CGAACACGGGAGCCCATGGACAAGTCTGGCTCTTATGGCATCCAGGGGGC
AGGCGGACAATTTGTTCGCAAAGTGGACGGAACACGGGAGCCCATGGACA
AGTCTGGCTCTTATGGCATCCAGGGGGCAGGCGGACAATTTGTTCGCAAA
GTGGACGGGTGTTATTTCAACGTCATGGGTTTCCCGATGCACGCATTTTC
ACGGCACATGGCGGCGCTTATCCAGCATGGCAAAGCATGAGTGTTATTTC
AACGTCATGGGTTTCCCGATGCACGCATTTTCACGGCACATGGCGGCGCT
TATCCAGCATGGCAAAGCATGA
back to top