mRNA_H-paniculata_contig1062.401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1062.401.1
Unique NamemRNA_H-paniculata_contig1062.401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1062.401.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.470e-5
Identity = 29/69 (42.03%), Postives = 37/69 (53.62%), Query Frame = 2 
Query:  116 HRRCRVLPQPDSCKRSVPLFWVMKGMPCALCAGVRCLNQPSYGVMGSKKMEFCSQHAKAEMVDVLNKKC 322
            H R RV     + +R         G   + C    C  +P+YGV GSKK EFCSQHA+  MV+V NK+C
Sbjct:   39 HHRTRV-----AHRRGXXXXXXXGGSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
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BLAST of mRNA_H-paniculata_contig1062.401.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 4.940e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:  206 CAGVRCLNQPSYGVMGSKKMEFCSQHAKAEMVDVLNKKC 322
            C    C  +P+YGV GSKK EFCSQHA+  MV+V NK+C
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1062.401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE4.470e-542.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI4.940e-558.97EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1062contigH-paniculata_contig1062:26942..29599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size864
Cds size681
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1062.401.1prot_H-paniculata_contig1062.401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1062 28919..29599 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928766.4036336-UTR-H-paniculata_contig1062:26941..270091622928766.4036336-UTR-H-paniculata_contig1062:26941..27009Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1062 26942..27009 +
1691480611.1873028-UTR-H-paniculata_contig1062:26941..270091691480611.1873028-UTR-H-paniculata_contig1062:26941..27009Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1062 26942..27009 +
1622928766.422903-UTR-H-paniculata_contig1062:28805..289181622928766.422903-UTR-H-paniculata_contig1062:28805..28918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1062 28806..28918 +
1691480611.1957476-UTR-H-paniculata_contig1062:28805..289181691480611.1957476-UTR-H-paniculata_contig1062:28805..28918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1062 28806..28918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928766.4512937-CDS-H-paniculata_contig1062:28918..295991622928766.4512937-CDS-H-paniculata_contig1062:28918..29599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1062 28919..29599 +
1691480611.2042124-CDS-H-paniculata_contig1062:28918..295991691480611.2042124-CDS-H-paniculata_contig1062:28918..29599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1062 28919..29599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1062.401.1

>prot_H-paniculata_contig1062.401.1 ID=prot_H-paniculata_contig1062.401.1|Name=mRNA_H-paniculata_contig1062.401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MKGMPCALCAGVRCLNQPSYGVMGSKKMEFCSQHAKAEMVDVLNKKCSNQ
GCSKRASCGVAGTKKAEFCSQHKVAEMVDVVSKKCNNSGCSKKPSYGVAG
TKKAEFCSQHAEAEMVDVVTKRCNNSGCSKQPSYGVAGSRKAEFCSQHAK
AEMVDVVNKRCNNSGCSKQPTYGVVGSRKAEFCSQHKVAEMVDVVNKKCG
NQGCSKRASYGVAGTKKAEFCSQHKVA
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mRNA from alignment at H-paniculata_contig1062:26942..29599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1062.401.1 ID=mRNA_H-paniculata_contig1062.401.1|Name=mRNA_H-paniculata_contig1062.401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2658bp|location=Sequence derived from alignment at H-paniculata_contig1062:26942..29599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGAAGGAAAGGGACACAGGAGGTCATGTTTATTGAAGAGTGTCCCATA
CTAATGGAAACTTAACAGGTGAGCTGGGAGAACGTCGAGAGCACTTGCTT
GGTGTCTGTGAAGTTATTCCAAAATCGGCAATCACCATCGCCGATCATCA
TCATGAAATGCAGTTGCTCGCGAATGGTTAAGTCTATGCATTATACTGTT
CGTTCCTTACACAGCCAGTGCTTATCCCTTATCATTCCACTCCACTCTAC
TCTATGATACTACACTTCACTGTGCTGTACGCCAGGGTGTATATGGTTCG
GAACATGTTATGCTCATATGAGATATTGAGCCGCGTTCCCAGTGACCAGA
TATCAACGCTTGGTCTGTTGCAAATCATTCCTGAATATTGCCGTCAATCA
GCCAGCCAGTCTGTACACAGAATCACGAAACACGCTATAATACTTTCCAT
CTATGCTCCAAGAAAAGAATCATCAATCAAATGAGTGATTTTTCGTGCGA
GGCAGTTGTTTTCCCTCCCAGACCATGAGTCGAGCAAAGCGTGGGCGTTT
CGAATGAGGAGATCGGCAGCGAAACCATTTTAGCCCTATCAGCGTCGTAA
GCTGTTTCGGAACGGAAAATGCCTTCAACGACAAATGGCAAGCGCTCAGT
CTTCGTCGGCAGAACTAGGATTGCTACATTTAAAAAATATACGCGGCCGA
ACGTTACTTGGCTGGAAGAGGTTGCCCTGCAATTGATCGGGGGGAAAGAG
GATATTTGGGGTGGGCAACAAATCGTGGTAATGTCCGTTGCGTGCCACGT
CTGTTTTTCATATTACTTAGCAGGCAGAGGTAGGCCTGAAATTGGTCGCG
AGGGAGGAGAATTTCAGATGTGAAACGGATCTCGGCAAATACGACCAGCG
CAAATACTTATCGAGAATATCCAAAGTGGCTATTTCATGGCAAAAATTAG
GCTATCTCACGATCTTTTTGATTGGTCCATTTTGATGGGAGCAGAGGAAG
AACTTTGCTTGTTATGTAATCAAGTACTGCTGCATGGCTCGACAACGGCG
ACGACGCGTTGAGCCCGCGAACATTTTCTGGAAGGCCTTGATCACAGGCA
AAAATTGTCCTACTCCTGGCCCTGACCGTATCGGGAGCTAAGCGCACAAA
CAAAAGATTAGAAAAATAGAAAATGTGGCGGCTGTCTGCACTAACGTAGT
AGCACATCAGAGTACACAACCATCATTCGTTAAGGCATTGGCTGTTATGA
GCTTCGTATTATGTTTGGGTGGCTTGAATTTTTGGGACCGAACCGGGAAA
CAAGTGGTAAGAATTGCGTGGGGTAAGAACATTGTCTCTACCGGTTAGAA
AAACAACCCCTAACGAAGCAGTGGTGTGTGTGCCACACAAAGCCACGTAC
TGGGGGTATGGATTCAAGCATTCCACGTGCTCAGGTACATACGATTCGTC
ATTTTACTGTCTGTAGTTATTCACAGACTGTCTTGAGAAATATATTCGTG
CATATTTAGTCGAACCCATTTTTATCCCTGGACCCTGAATAGGTATATAA
TGTTTGTGTTTGGCTGGTACAGCTACCTCCCGTTTTTGTGGTTCGAAGGT
GGAGGGTTCATCGGGGCTGGTGCTTCCTGCGCCGGTGTTTCCGTGACGGA
GCACGATCCATGCTTGTGCACAACCGTTTCTTCGAGAAGTGTACCAACAG
GTAGCACCATCTTCTCACAGTACCGATGCAGCCTACCCTTCTTGCCTCCT
CTTGTCATGGAATTCTAGTCCATCCCACTCACTCTGGTCGCCTTGAGCGC
CCAACAGGATGTTGACAATGTTCGTCTTACTATGGAATGTCGCCTGTTTC
TTGCGCTGGTTCAGGGATCTGCTGGTGCACCAAAGGCGAGCTGTTTCGTC
TGTGAGACTGTCACCGACGGTGTAGAGTCTTGCCGCAGCCGGACTCGTGC
AAACGTTCGGTCCCGTTGTTTTGGGTCATGAAGGGGATGCCTTGTGCACT
ATGCGCTGGCGTAAGATGCCTAAATCAGCCGTCTTATGGTGTAATGGGCA
GCAAGAAGATGGAGTTCTGCTCCCAGCACGCAAAGGCAGAAATGGTTGAT
GTACTGAACAAGAAGTGCAGCAACCAGGGCTGCTCCAAGAGGGCGTCGTG
CGGTGTCGCGGGCACTAAGAAGGCGGAGTTCTGCTCCCAGCACAAAGTGG
CAGAAATGGTTGATGTGGTGAGCAAGAAGTGCAACAACTCGGGCTGCTCC
AAGAAGCCGTCGTACGGTGTCGCGGGCACTAAGAAGGCGGAGTTCTGCTC
CCAGCACGCGGAGGCAGAAATGGTTGATGTGGTGACCAAGAGGTGCAATA
ACTCGGGCTGCTCCAAGCAGCCGTCGTACGGTGTAGCGGGCAGTAGGAAG
GCGGAGTTCTGCTCCCAGCACGCGAAGGCAGAAATGGTTGATGTGGTGAA
CAAGAGGTGCAACAACTCGGGCTGCTCCAAGCAGCCGACGTACGGTGTCG
TGGGCAGTAGGAAGGCGGAGTTCTGCTCCCAGCACAAAGTGGCAGAAATG
GTTGATGTGGTGAACAAGAAGTGCGGCAACCAGGGCTGCTCCAAGAGGGC
GTCGTACGGTGTCGCGGGCACTAAGAAGGCGGAGTTCTGCTCCCAGCACA
AAGTGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1062:26942..29599+

>mRNA_H-paniculata_contig1062.401.1 ID=mRNA_H-paniculata_contig1062.401.1|Name=mRNA_H-paniculata_contig1062.401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig1062:26942..29599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGGGATGCCTTGTGCACTATGCGCTGGCGTAAGATGCCTAAATCA
GCCGTCTTATGGTGTAATGGGCAGCAAGAAGATGGAGTTCTGCTCCCAGC
ACGCAAAGGCAGAAATGGTTGATGTACTGAACAAGAAGTGCAGCAACCAG
GGCTGCTCCAAGAGGGCGTCGTGCGGTGTCGCGGGCACTAAGAAGGCGGA
GTTCTGCTCCCAGCACAAAGTGGCAGAAATGGTTGATGTGGTGAGCAAGA
AGTGCAACAACTCGGGCTGCTCCAAGAAGCCGTCGTACGGTGTCGCGGGC
ACTAAGAAGGCGGAGTTCTGCTCCCAGCACGCGGAGGCAGAAATGGTTGA
TGTGGTGACCAAGAGGTGCAATAACTCGGGCTGCTCCAAGCAGCCGTCGT
ACGGTGTAGCGGGCAGTAGGAAGGCGGAGTTCTGCTCCCAGCACGCGAAG
GCAGAAATGGTTGATGTGGTGAACAAGAGGTGCAACAACTCGGGCTGCTC
CAAGCAGCCGACGTACGGTGTCGTGGGCAGTAGGAAGGCGGAGTTCTGCT
CCCAGCACAAAGTGGCAGAAATGGTTGATGTGGTGAACAAGAAGTGCGGC
AACCAGGGCTGCTCCAAGAGGGCGTCGTACGGTGTCGCGGGCACTAAGAA
GGCGGAGTTCTGCTCCCAGCACAAAGTGGCAATGAAGGGGATGCCTTGTG
CACTATGCGCTGGCGTAAGATGCCTAAATCAGCCGTCTTATGGTGTAATG
GGCAGCAAGAAGATGGAGTTCTGCTCCCAGCACGCAAAGGCAGAAATGGT
TGATGTACTGAACAAGAAGTGCAGCAACCAGGGCTGCTCCAAGAGGGCGT
CGTGCGGTGTCGCGGGCACTAAGAAGGCGGAGTTCTGCTCCCAGCACAAA
GTGGCAGAAATGGTTGATGTGGTGAGCAAGAAGTGCAACAACTCGGGCTG
CTCCAAGAAGCCGTCGTACGGTGTCGCGGGCACTAAGAAGGCGGAGTTCT
GCTCCCAGCACGCGGAGGCAGAAATGGTTGATGTGGTGACCAAGAGGTGC
AATAACTCGGGCTGCTCCAAGCAGCCGTCGTACGGTGTAGCGGGCAGTAG
GAAGGCGGAGTTCTGCTCCCAGCACGCGAAGGCAGAAATGGTTGATGTGG
TGAACAAGAGGTGCAACAACTCGGGCTGCTCCAAGCAGCCGACGTACGGT
GTCGTGGGCAGTAGGAAGGCGGAGTTCTGCTCCCAGCACAAAGTGGCAGA
AATGGTTGATGTGGTGAACAAGAAGTGCGGCAACCAGGGCTGCTCCAAGA
GGGCGTCGTACGGTGTCGCGGGCACTAAGAAGGCGGAGTTCTGCTCCCAG
CACAAAGTGGCA
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