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Homology
BLAST of mRNA_H-paniculata_contig1717.3998.1 vs. uniprot
Match: D8LEB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB0_ECTSI) HSP 1 Score: 220 bits (560), Expect = 1.300e-63 Identity = 107/166 (64.46%), Postives = 134/166 (80.72%), Query Frame = 3
Query: 399 EDWDPLSTEKMRAVTAGQGEFLAKRGFAGGLVSHFLRETDVEFKALQGGSSRGMNEAQIQEAELRFTEVFLPAVKGLKRHGSMDVVLDSLFEGEDNAGEFVVRFEVTITRCHPEDLEATSARAIRECAPAIRSAVTHEGVAPGDTHEVVFVGRPMWELVPPVWNFS 896
E+ ++ E+MRA+T+GQGEFLA+RGFA GLVSHFL ET+ EF+ LQGG+S GMN Q+++A R EVF+PAVK L+ S+DVVLDSLF+G D+AG+FVVRFEVT+TRCHPED++++ A A+RECA AI+ AV EGV DTHEVVFVGRPMWELV PV + S
Sbjct: 304 EEGGQVAAERMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMNAQQLEDAAARLEEVFVPAVKRLRARSSVDVVLDSLFQGADDAGDFVVRFEVTLTRCHPEDIDSSPAPALRECASAIKEAVRDEGVNDKDTHEVVFVGRPMWELVSPVLDLS 469
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-00_001570.1 |
| Exons | 4 |
| Model size | 1163 |
| Cds size | 729 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1717.3998.1 >prot_H-paniculata_contig1717.3998.1 ID=prot_H-paniculata_contig1717.3998.1|Name=mRNA_H-paniculata_contig1717.3998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
MEMLEEEIDLSSAFRSNNDNNAAAAGSRECDPRGPMRATCDDCSGGQLRL
VYDVLVVDRGCGKCDTSLVPLTMEDWDPLSTEKMRAVTAGQGEFLAKRGF
AGGLVSHFLRETDVEFKALQGGSSRGMNEAQIQEAELRFTEVFLPAVKGL
KRHGSMDVVLDSLFEGEDNAGEFVVRFEVTITRCHPEDLEATSARAIREC
APAIRSAVTHEGVAPGDTHEVVFVGRPMWELVPPVWNFSNRR* back to topmRNA from alignment at H-paniculata_contig1717:632..5321- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1717.3998.1 ID=mRNA_H-paniculata_contig1717.3998.1|Name=mRNA_H-paniculata_contig1717.3998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4690bp|location=Sequence derived from alignment at H-paniculata_contig1717:632..5321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGAGGACCGCTGGTTGTGCCGCTGCTGCTGTTGGCGCTAGTACCGGC
AATCGTACTTTCGGTGCTGGGAGCGGCGACGGTAGCGATACAGGTGGGAG
TTTCAGGTCTGACGAAGAGAAGGAAGAGGAGAAGGTTGTAGGAGGGGACG
AGAATCTTCTGCCATGCGATGAAGAAGACATGGAGATGTTGGAGGAAGAA
ATCGACTTATCGTCAGCCTTTCGCAGCAACAACGACAACAATGCCGCTGC
CGCCGGCAGCCGCGAGTGTGACCCGAGAGGTCCGATGCGTGCGACGTGCG
ATGACTGTAGTGGTGGACAGTTGCGCCTAGTGTACGACGTCCTGGTTGTG
GACCGGGGATGCGGAAAGTGCGACACCTCCCTCGTGCCGTTGACTATGGA
AGATTGGGACCCACTGTCGACGGAGAAAATGAGAGCCGTGACTGCGGGGC
AGGGAGAGTTTCTCGCGAAAAGGTGATGATGTTCCAATACTGCAATTGCT
CTCTGTCCTGTATGAAGATATCATGTAGGTGAAGCACACGCCTGTTCGGT
GCGAACACCAAGAGAGTGTCGGTTAGGCTTTCATGTAGTAATTCATGATT
TTTGGCAGTTGTTATTTTCTTCTATGGCGATTGTACAAGAGATGCCAATA
CTGTGACTTACTAGTCTTCTGAGGCATGTGCTTTATGACGGTTAACGGTT
TTTCAAACGTGAACGTTTTTGTGTCTGTTGCCTCACGAAGGAGCATCTGC
AGCACTAGTGGAGTACCTCCTCGAGCTTGTGACCAGAGTCCATGCTCATG
CACTACGATACACTCCTGTATGTTCGCAGACAGCCCCGGCACAATCACAC
GTAATGCTCTTCTTAGCGGCGCCTTGTTGTCACTGGCCTTGACCTCCGCC
GGGTCGGCTTAGATTTACTCGCAGACTCGGACCCTATCAATATCTTCATG
AGACAAACTGAAGGAAACAGGCGTCGGTCGTAGCAGCAGCAACAGCAGCG
GCATCGCTCGTATAGTGAAGGGCAACAAGCGTTCTGTTCTAATGATTTGT
GTACACTGTATATCTTTTGGGGCATTCCGATGTACTGCCAAGGGGGGGTA
TTGGAACATATCGTTCGTCCACGGGTATTCATCAGAATATTTTCGAGGAA
CGGGTTACGTAAGTTTTTTATCCTTTTTCAAGTTCAACTCGTGTTTCCCT
TGTTTGTTAATTCGTTCCTTCTTTCTTTCTTCCAGCTACCGTGCAACGTC
CAGATGCGCCATCGTTACACCCTGTCGTCACATTCCGTTATGACATACCA
TACATACTCACGAAGTACACTCTCTTTTGTATATCGTCTATACCTTTGAA
GGGTTTGTCCGTACTGTAATGGTCTAGGAACTTTTGGTCCCAACCCATTT
TTCATTGATTCGTTGACATTGTTGTGTATGTCTATCTGTATAGGAACTGC
CTTTTTTGAACAGCGCTCCGAAATCGTGAGAGATTGTTCGAGCGAGCAGA
ATAATGGTGCTAAGCGTCCGGCTGTCCATTCTCCGATCGATGACTCTGAA
CGGAAATAATGTTGATAAAAAAATGTCGTCCACCTCGTCCCTCCCTCCCT
CTCGCCAACAGTCGCAACTCTTGCCGCCCCCCTTTTTCTTCCTGAAAAAA
CGAAACAAATACCTCACGGCTTTGGCGGGGAATTCATTATACAGAGGCTT
TGCTGGTGGGCTCGTATCGCATTTCCTGAGGGAAACTGATGTGGAATTCA
AGGCTCTTCAGGTGCTGTACAATTCAAAAATGAAGCGCGGGTACACAGCA
GTAACTAGCCTGGCCTTCCTTGTGTACGTACGCCGTCTGAACGGTTGGAT
ACAGTATGCATCTATTACAGCATGAATGTATTGTACCCGGTTTCGCTGAC
TCTTGTTATCTTTTTCTTCTTGCCCTGGTATCATTCGATATTCTGCTGTG
CAGATGCGTTCGTGGAGACATACACACACACACACACACACACACACACA
CACACCTATATACAAAATGTTTTTCCCCCCCAGAATACACAAACATCTTC
CAGTCAGCGTCTGATTAAATCAGAATTGCCAGGTGACCCTCAAGCATCTT
TATTCGCGCGTTTTTTAGTACAAAATAATCAATCGATTCTTTGTTGATAC
CTACGGTTCTGATTTGTCTATGTGCCGAACTTTTTTACATGGATCACTTG
ATGGTTTACGCACTTCGTCATGGTATGTTCACTCTCCCTCGATGTATATA
CATTGCTGGATGCAGACACCACAAGCTTTTCCAGAAATGGCACAACGTTG
TGGATTTTTATTTAGCTCACCCACGTAGGTAACTGTGTCGCTGGAGGGAC
CGCTGGAGCTCGAGGCATAATTTATAGAGGGTATTTAATTATCTCCCGAA
CGGCGATCACGCATATTCTGTGTTTGTTGTGTGTGCTATTTTCTACGCAT
CATAGTACTGGAAAGCCCAGAGCACCAACCTTTGCCATCGACGGCAGCAG
CATTGGAAAGGTCTTCTTGCCGCTAGAGTATCGTAGGGTTGTGACTTTCA
ACTAGATGCCGTGGCCTTCAGCCGGCAATCTTACTCTCTCCGTGTATAGC
CCTCGCCAAAAACGGAGATGTTCTATATTAGGAGGGAACGTTGTCCAGGA
GTCCCCAAGGGGGCTTTAAAGTAACGAGTTGGCGACGGAATGACCAGCGC
CGGAATAACTTATCCAAAATAGGTGTTTAGTCTGTGGTGTAGGGTACATC
TCTGCCTTGCATGACATTGGTTTTTGACCGTTTGGCTCTTCTAGTGTAAG
TAGTCATTTTCCAGTACTCCACTCTTGGTTTCTGTCCATTATTCATTATC
GGACATGGTGACTTGACTACCGTTATTGTCATATTCTAGGGTGTATCACA
TTCAAATTACCTCAAGTGATCAGCGTTTTCCTAAGTCTTGTGTCCTGAGA
AGCAAGAGCCCGCTCTGGCGGAAGAGGAGCGAAGTCTCTCCAATGACTAA
TGACGGTTCGATCTCGACAGCGGTCTGTCCAACGACCTAGCTGTTGGTGA
CGTATGCTATTTAGTATGATAGCTCTGGAGAGCTACCTTCCGAAAACATC
GCGGTCGAAAAAATTGTCTACCGAGGGGTGTTCAATGTAATGAAGCGTGA
AGTATGACCGGTATTCACTGTACGGTAGAATGGTTGCTCCAGCAGGAGAT
GTTCGACAACACAAGCATGGCGTCCAACAAGTATTTCTTTTGTATCATTC
ATTGGGGTCATCATGCGCGTTTGCTGTGACCACGGTCAGTAATTGCCCCC
AAAACAGCTACTCTGAATATGTGGCCAACGAAAGGCTTGAGGGCTAACAA
TTTCCTTCACTATCCAGAGGAACATCGACTAATGAATCAAGACTTTTCGT
ATGACCATCCGCCAACTGACTCACAGAAAGGCGTGGTCATGTGTTTGTTT
TTTACGGCCAGTTCGCGATTGGGCATGTGAACAATTTCGTTTCGGCGCTC
CGTTCGCGGATGGTCGTGTGAGAATTTGCCGGTCATTTGAAATAAAGGCT
TGCAGATAGTGGCGTGATTTTATACGCCGAGTGAAATAGTGTAACTGCCT
GGTAAAGTTATTTTAATCGTATTTGTTTCAATCATTTTAATCACATGCAT
GCGTGAATAAATTTATGTGCTTTTCAAATGCCTGGGAAATTGATCAATCA
ATTCTACTCTATTCATCCGATCATGCAATCATGCAATTTCCCCACCAGGG
AGGGTCATCCCGAGGTATGAACGAGGCGCAGATTCAAGAAGCCGAGTTGA
GGTTCACGGAAGTGTTTCTGCCAGCCGTCAAGGGACTGAAACGCCACGGC
TCCATGGACGTGGTGCTCGACTCTCTTTTCGAGGGGGAGGACAACGCGGG
AGAGTTCGTGGTCCGGTTCGAGGTCACTATCACCAGGTACTCTTGCTCGG
TCGATGGAGCTTCGCGCGGATATATGTTTATCATCTCCTTTGCGATAGAT
ACTGTAACGTTGTCATCGATTCGGAACATTTTTTCAACACTGTACTTTCG
TAATTTCTGAGAAGGGAATCTGTGTGCGAGCGCCACGAGCCGTTGTGCAT
GGGTCTAGTACAAAGCTCTGGAGTGTAACTATACGGTCGTAGCGCTGGCG
GCGGTCATACTCTACTGTTAGTGTGGTGTACGTTCTACGTATTATTATTA
TTATTATGAGTGCTTATCCCCCACCCTTTTTTTTCTGCCCCTGCTGCATC
CCAGGTGCCACCCGGAAGACTTAGAGGCAACTTCTGCGCGTGCTATTAGA
GAATGCGCCCCCGCGATCCGCTCGGCAGTGACACATGAAGGAGTGGCCCC
CGGAGACACGCACGAAGTGGTTTTCGTCGGCAGACCGATGTGGGAGTTGG
TTCCGCCCGTGTGGAATTTTTCGAACAGGAGATGAAAGGGGGGGGTCATA
GTGTATGATGCAGCACATATGTACGAGTTGGGCTCAGGCGTTGAGCGTTT
TCGGGCAGGGATGGTGTTAGTTTGTCCCCTGTGGTCCAAAGAACAGGTAA
CGTAAGAGTGACATGAAAAGCTTTGGCTTGCCAGGGGCGGGAATAACAAG
GGTATTGCCAACTTTACAGGGAGCGAGGGGGTGGAAGGGGCGTGTGAATT
TGGGCAGTAAATAAATATCCATGGGCGTCATTTCTGTCCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1717:632..5321- >mRNA_H-paniculata_contig1717.3998.1 ID=mRNA_H-paniculata_contig1717.3998.1|Name=mRNA_H-paniculata_contig1717.3998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig1717:632..5321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATGTTGGAGGAAGAAATCGACTTATCGTCAGCCTTTCGCAGCAA
CAACGACAACAATGCCGCTGCCGCCGGCAGCCGCGAGTGTGACCCGAGAG
GTCCGATGCGTGCGACGTGCGATGACTGTAGTGGTGGACAGTTGCGCCTA
GTGTACGACGTCCTGGTTGTGGACCGGGGATGCGGAAAGTGCGACACCTC
CCTCGTGCCGTTGACTATGGAAGATTGGGACCCACTGTCGACGGAGAAAA
TGAGAGCCGTGACTGCGGGGCAGGGAGAGTTTCTCGCGAAAAGATGGAGA
TGTTGGAGGAAGAAATCGACTTATCGTCAGCCTTTCGCAGCAACAACGAC
AACAATGCCGCTGCCGCCGGCAGCCGCGAGTGTGACCCGAGAGGTCCGAT
GCGTGCGACGTGCGATGACTGTAGTGGTGGACAGTTGCGCCTAGTGTACG
ACGTCCTGGTTGTGGACCGGGGATGCGGAAAGTGCGACACCTCCCTCGTG
CCGTTGACTATGGAAGATTGGGACCCACTGTCGACGGAGAAAATGAGAGC
CGTGACTGCGGGGCAGGGAGAGTTTCTCGCGAAAAGAGGCTTTGCTGGTG
GGCTCGTATCGCATTTCCTGAGGGAAACTGATGTGGAATTCAAGGCTCTT
CAGAGGCTTTGCTGGTGGGCTCGTATCGCATTTCCTGAGGGAAACTGATG
TGGAATTCAAGGCTCTTCAGGGAGGGTCATCCCGAGGTATGAACGAGGCG
CAGATTCAAGAAGCCGAGTTGAGGTTCACGGAAGTGTTTCTGCCAGCCGT
CAAGGGACTGAAACGCCACGGCTCCATGGACGTGGTGCTCGACTCTCTTT
TCGAGGGGGAGGACAACGCGGGAGAGTTCGTGGTCCGGTTCGAGGTCACT
ATCACCAGGGAGGGTCATCCCGAGGTATGAACGAGGCGCAGATTCAAGAA
GCCGAGTTGAGGTTCACGGAAGTGTTTCTGCCAGCCGTCAAGGGACTGAA
ACGCCACGGCTCCATGGACGTGGTGCTCGACTCTCTTTTCGAGGGGGAGG
ACAACGCGGGAGAGTTCGTGGTCCGGTTCGAGGTCACTATCACCAGGTGC
CACCCGGAAGACTTAGAGGCAACTTCTGCGCGTGCTATTAGAGAATGCGC
CCCCGCGATCCGCTCGGCAGTGACACATGAAGGAGTGGCCCCCGGAGACA
CGCACGAAGTGGTTTTCGTCGGCAGACCGATGTGGGAGTTGGTTCCGCCC
GTGTGGAATTTTTCGAACAGGAGATGAGTGCCACCCGGAAGACTTAGAGG
CAACTTCTGCGCGTGCTATTAGAGAATGCGCCCCCGCGATCCGCTCGGCA
GTGACACATGAAGGAGTGGCCCCCGGAGACACGCACGAAGTGGTTTTCGT
CGGCAGACCGATGTGGGAGTTGGTTCCGCCCGTGTGGAATTTTTCGAACA
GGAGATGA back to top
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