mRNA_H-paniculata_contig1717.3999.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1717.3999.1
Unique NamemRNA_H-paniculata_contig1717.3999.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1717.3999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1717contigH-paniculata_contig1717:5812..6627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size795
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1717.3999.1prot_H-paniculata_contig1717.3999.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1717 5812..6243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929355.2944107-CDS-H-paniculata_contig1717:5811..61701622929355.2944107-CDS-H-paniculata_contig1717:5811..6170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1717 5812..6170 -
1691480827.861563-CDS-H-paniculata_contig1717:5811..61701691480827.861563-CDS-H-paniculata_contig1717:5811..6170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1717 5812..6170 -
1622929355.3097606-CDS-H-paniculata_contig1717:6191..62431622929355.3097606-CDS-H-paniculata_contig1717:6191..6243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1717 6192..6243 -
1691480827.8704507-CDS-H-paniculata_contig1717:6191..62431691480827.8704507-CDS-H-paniculata_contig1717:6191..6243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1717 6192..6243 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929355.3245137-UTR-H-paniculata_contig1717:6243..66271622929355.3245137-UTR-H-paniculata_contig1717:6243..6627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1717 6244..6627 -
1691480827.879585-UTR-H-paniculata_contig1717:6243..66271691480827.879585-UTR-H-paniculata_contig1717:6243..6627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1717 6244..6627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1717.3999.1

>prot_H-paniculata_contig1717.3999.1 ID=prot_H-paniculata_contig1717.3999.1|Name=mRNA_H-paniculata_contig1717.3999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MVRDAEMAFHHQKHRNMTLPCWKLNRPAKALGRKSSLLDDLAGSPAAPTS
ADRLFNAGDDACKVRRSSSSVSLMDPWTCSKTASCSAASVSVQDTEAPSP
DSRHGGHSEEMDRGDRRRRRGRQREGSERLAHEDHDH
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mRNA from alignment at H-paniculata_contig1717:5812..6627-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1717.3999.1 ID=mRNA_H-paniculata_contig1717.3999.1|Name=mRNA_H-paniculata_contig1717.3999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=816bp|location=Sequence derived from alignment at H-paniculata_contig1717:5812..6627- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACAGATAACATATCAGGAGCTGGGGACAGCGAAGAGGAGGGCAAGGA
CAGCTGATGTGCAAAGTCTTAGAGGTCGTTGTATAACCCTCTTATCAGAT
ATCGTGGGGGTATCACAACCTCTTGCGACGCCATCAGCTTCGCCTCACTG
TTTCGCTCTATTTTCAAAATCAGACCAAAAACGGCGGGTGACTGACAGGG
GGAGATTATCGCCGTTTGCGATTTCGAGACGAAACTACTATTGTATTGTC
TCTTTGCTTTGCAGGTACTGCAGGCACAGAGACGCTCTTTCTGTCCCCTA
CTGTCCGTCGAGTGGGCGTTCTGCCGAAGATCCACTCCCCTCTGTACTCG
ATCCAGCAACAGCGACATAATCGCAGCAAGTCGCATGGTCCGCGACGCCG
AGATGGCCTTCCATCATCAAAAGCACCGCAATATGAGCCAAGATCCCCCC
CAAAAAGCGTTGCCCTGCTGGAAGCTGAATCGGCCCGCGAAAGCTTTGGG
ACGGAAGTCGTCGCTCTTGGACGACCTGGCCGGCTCCCCCGCAGCGCCCA
CCTCTGCTGACAGACTTTTCAATGCCGGCGATGACGCTTGTAAAGTCCGG
CGATCGTCGTCCTCCGTCTCTCTGATGGACCCGTGGACCTGCAGCAAGAC
TGCTTCATGTTCTGCCGCTTCCGTCAGTGTGCAAGACACAGAGGCCCCTT
CCCCGGACAGCCGGCACGGCGGACACAGCGAGGAGATGGACAGAGGTGAC
CGCCGCCGCCGCCGCGGGCGACAGCGAGAAGGCAGCGAGAGGCTCGCGCA
CGAGGATCATGATCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1717:5812..6627-

>mRNA_H-paniculata_contig1717.3999.1 ID=mRNA_H-paniculata_contig1717.3999.1|Name=mRNA_H-paniculata_contig1717.3999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig1717:5812..6627- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCGCGACGCCGAGATGGCCTTCCATCATCAAAAGCACCGCAATAT
GAATGGTCCGCGACGCCGAGATGGCCTTCCATCATCAAAAGCACCGCAAT
ATGACGTTGCCCTGCTGGAAGCTGAATCGGCCCGCGAAAGCTTTGGGACG
GAAGTCGTCGCTCTTGGACGACCTGGCCGGCTCCCCCGCAGCGCCCACCT
CTGCTGACAGACTTTTCAATGCCGGCGATGACGCTTGTAAAGTCCGGCGA
TCGTCGTCCTCCGTCTCTCTGATGGACCCGTGGACCTGCAGCAAGACTGC
TTCATGTTCTGCCGCTTCCGTCAGTGTGCAAGACACAGAGGCCCCTTCCC
CGGACAGCCGGCACGGCGGACACAGCGAGGAGATGGACAGAGGTGACCGC
CGCCGCCGCCGCGGGCGACAGCGAGAAGGCAGCGAGAGGCTCGCGCACGA
GGATCATGATCACCGTTGCCCTGCTGGAAGCTGAATCGGCCCGCGAAAGC
TTTGGGACGGAAGTCGTCGCTCTTGGACGACCTGGCCGGCTCCCCCGCAG
CGCCCACCTCTGCTGACAGACTTTTCAATGCCGGCGATGACGCTTGTAAA
GTCCGGCGATCGTCGTCCTCCGTCTCTCTGATGGACCCGTGGACCTGCAG
CAAGACTGCTTCATGTTCTGCCGCTTCCGTCAGTGTGCAAGACACAGAGG
CCCCTTCCCCGGACAGCCGGCACGGCGGACACAGCGAGGAGATGGACAGA
GGTGACCGCCGCCGCCGCCGCGGGCGACAGCGAGAAGGCAGCGAGAGGCT
CGCGCACGAGGATCATGATCAC
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