prot_H-paniculata_contig17167.3997.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17167.3997.1
Unique Nameprot_H-paniculata_contig17167.3997.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length655
Homology
BLAST of mRNA_H-paniculata_contig17167.3997.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.450e-32
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0
Query:    1 METYSQLREAAKQIIARVAGRLSGTVGRSGLMDPAVTRLERAAVVANTPITFRPRELLGIIHEYLAANGLTGAASALAAEAGM 83
            +ETYSQLREAAKQIIARVAGRLSGTVG+SGLMDPAVT LERAAVVANTPITFRPRELLGIIHEYLAANGL GAA ALA+EAG+
Sbjct: 1197 VETYSQLREAAKQIIARVAGRLSGTVGKSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALASEAGI 1279          
BLAST of mRNA_H-paniculata_contig17167.3997.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.830e-30
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 0
Query:    1 METYSQLREAAKQIIARVAGRLSGTVGRSGLMDPAVTRLERAAVVANTPITFRPRELLGIIHEYLAANGLTGAASALAAEAGM 83
            +ETYS+LREAAKQIIARVAGRLSGTVG+SGLMDPAVT LERAAVVANTPITFR RELLGIIHEYLAANGL GAA ALA+EAG+
Sbjct: 1235 VETYSKLREAAKQIIARVAGRLSGTVGKSGLMDPAVTGLERAAVVANTPITFRSRELLGIIHEYLAANGLAGAAEALASEAGI 1317          
BLAST of mRNA_H-paniculata_contig17167.3997.1 vs. uniprot
Match: A0A4D9D9Z0_9STRA (LisH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9Z0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.350e-12
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 0
Query:    2 ETYSQLREAAKQIIARVAGRLSGTVGRSGLMDPAVTRLERAAVVANTPITFRPRELLGIIHEYLAANGLTGAASALAAEAGMHISHP 88
            E Y+ LR AA Q+IARV GR +  V  S  MDPA  +LE+AA+V  TPIT+ P +LL +IH++L A GL  AA  L  EAG+ +  P
Sbjct:  764 EHYANLRSAALQLIARVTGRPASAVSHSDAMDPASWKLEKAAIVTRTPITYDPADLLHLIHDHLYAQGLHQAARVLEMEAGLRLPAP 850          
BLAST of mRNA_H-paniculata_contig17167.3997.1 vs. uniprot
Match: UPI000B8D10B3 (DDB1- and CUL4-associated factor homolog 1 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D10B3)

HSP 1 Score: 59.7 bits (143), Expect = 1.890e-5
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 0
Query:    5 SQLREAAKQIIARV--AGRLSGTVGRSGLMDPAVTRLERAAVVANTPITFRPRELLGIIHEYLAANGLTGAASALAAEA 81
            ++L + A ++IA V  +GR S T+  +    P + R+ERAA+VA TPIT+  RELL +IHE+L A+GL G A+ L  EA
Sbjct:  598 AELAQVAIELIAIVTNSGRAS-TLAATDAATPTLKRIERAAIVAATPITYHSRELLLLIHEHLQASGLGGTAATLLKEA 675          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17167.3997.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHI0_ECTSI5.450e-3291.57LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JDL7_9PHAE1.830e-3089.16LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9D9Z0_9STRA3.350e-1250.57LisH domain-containing protein n=2 Tax=Monodopsida... [more]
UPI000B8D10B31.890e-546.84DDB1- and CUL4-associated factor homolog 1 n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033270VPRBP/DCAF1 familyPANTHERPTHR13129VPRBP PROTEIN-RELATEDcoord: 5..651
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 53..85
score: 8.824

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17167contigH-paniculata_contig17167:270..4544 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17167.3997.1mRNA_H-paniculata_contig17167.3997.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17167 255..4544 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17167.3997.1 ID=prot_H-paniculata_contig17167.3997.1|Name=mRNA_H-paniculata_contig17167.3997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=655bp
METYSQLREAAKQIIARVAGRLSGTVGRSGLMDPAVTRLERAAVVANTPI
TFRPRELLGIIHEYLAANGLTGAASALAAEAGMHISHPLSSGGGGGGGQP
RSSSSIPSALSRSTRSGGGAVTPTPTAPRAGRGGVRSPTPMSAASGGAGG
VGATAPQTSVGGTKRNARGGAKRLSFVAAATAVTGPAGSPSAGKGGGAAD
GGVGGGGKSGKRISASPVSTSNRGVGDSATERVEGGGDGGGGGGGVGGGD
GRAAKRAKKTESHHPDSKPAERGGVSNSNSSSSSRKKKKQNENAATLAQE
VVPSVSPAAPNASGVTLTGAVSQPRQRSRIAKAFAAPSLFGTCSRLGAFG
DGVARTPRRAQASAGATKAATPRTPSSSQHPSRGAGAGARPGGRMAAGQQ
GKSTTPSTPGTASRARRSSAGKNSTPQPFESVSTPKSAGRYSKPTAPRDE
SACAIEDWGTPVGGGGGFRSPRGPYSSSAAGGGGAIGVGSGVLGGSLVTM
YGGGGRHDHLRFGSGTGIGPIRSSAGCGKGWKGSAAGGGGGGGGSSSGGG
GLGAGGGRGGWFNDEPGMISVTAAGSGHSASGVGCSGDAGGGGRTALDAI
VTSFLRNQHERCPDPVCVLPPLSLFEPHRCPARTPAGAVGAGAPPSVTKR
ALALQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033270VPRBP/DCAF1
IPR006594LisH