prot_H-paniculata_contig1716.3993.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1716.3993.1
Unique Nameprot_H-paniculata_contig1716.3993.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length268
Homology
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BLAST of mRNA_H-paniculata_contig1716.3993.1 vs. uniprot
Match: A0A6H5JXK0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.330e-16
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 0 
Query:    4 IILLFVMIAISTLLFVVSRSLCRDPDLMADGDRERAQRALVEAVVRNMGTQELFAIASGQLGANALLTAA----ATQRRDQTEEERGVSQMTRKSFVKMVAGRRGRGPIPEI 111
            I+LL  MI +  L+F V+R+LCRDPDL+        Q+AL EAVVR M T EL AIASG+ G+   L +     AT+R  Q E+  GVSQ TR SFVK+ AG+RG  P  ++
Sbjct:    5 ILLLLGMIGVFGLIFAVTRTLCRDPDLLQPEGYMERQQALAEAVVRQMDTHELVAIASGRFGSGGGLLSRGRGRATRRFQQAEQTAGVSQETRMSFVKLSAGKRGHAPAHDV 116
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BLAST of mRNA_H-paniculata_contig1716.3993.1 vs. uniprot
Match: D7G9H7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H7_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.250e-7
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:   40 QRALVEAVVRNMGTQELFAIASGQLGANALLTAA----ATQRRDQTEEERGVSQMTRKSFVKMVAGRRGRGPIPEI 111
            Q+AL EAVVR M T EL AIASG+ G+   L +     A++R  Q E+  GVSQ TR SFVK+ AG+RG  P  ++
Sbjct:    4 QQALAEAVVRQMDTHELVAIASGRFGSGGGLLSRGRGRASRRFQQAEQTAGVSQETRMSFVKLSAGKRGLAPAHDV 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1716.3993.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXK0_9PHAE8.330e-1649.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G9H7_ECTSI5.250e-750.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..268
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..18
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..25
score: 0.506
NoneNo IPR availableTMHMMTMhelixcoord: 4..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1716contigH-paniculata_contig1716:9135..20164 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1716.3993.1mRNA_H-paniculata_contig1716.3993.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1716 9135..20355 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1716.3993.1 ID=prot_H-paniculata_contig1716.3993.1|Name=mRNA_H-paniculata_contig1716.3993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MDAIILLFVMIAISTLLFVVSRSLCRDPDLMADGDRERAQRALVEAVVRN
MGTQELFAIASGQLGANALLTAAATQRRDQTEEERGVSQMTRKSFVKMVA
GRRGRGPIPEIEVHNSPPLAPPTPSPPPPAAAAAAAAVPVVDGDHNKDVA
LSTGAAAPAASSAEAEAELLMLSADAKEEKIRNVSTRNPSLTSSEDKLSV
CGCSDSVQPVPVAPSKTVPVLAPRAKRDIAMESVAPLGTVLTQSEVAELG
GQVAGEQNPGNDAVGGGG
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