mRNA_H-paniculata_contig17151.3989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17151.3989.1
Unique NamemRNA_H-paniculata_contig17151.3989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: A0A6H5KG25_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG25_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 2.400e-129
Identity = 207/258 (80.23%), Postives = 234/258 (90.70%), Query Frame = 1
Query:   37 QAVLTGVIPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGNITPVELKETLGSFGLEGEDAEDILVEIFSKYVVAMCQHSATKTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMFEVCDTEEAYSFEMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKWDAVKAEQLQRARKTLGMQDDVVTEMHKTVYR 810
            +AVLTGVIPVASAVGYL MP   VAVSA+GA  SGVGG +AR+KL QARRESAPA VA LL+ KGVGNITP+E+ E+LGSFGLEGE+AED+L++IFSKYVVAMCQ+SATKTSEIKELS+LRETLGLDGLLMGEALYQAASP+YSQFV RTPS ELADEWSPNRR+LDKF+FLCDRMFEVCDTEEAYSFEMSRISK+FD+ L +VK RCAAIA PFY KAL SAAAKW++VKA+QL+RAR+TLGM ++V  EMHK VYR
Sbjct:   96 KAVLTGVIPVASAVGYLAMPGG-VAVSAVGAVASGVGGNLARRKLKQARRESAPAHVAGLLDAKGVGNITPLEIMESLGSFGLEGEEAEDVLIQIFSKYVVAMCQNSATKTSEIKELSELRETLGLDGLLMGEALYQAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVCDTEEAYSFEMSRISKMFDLNLGEVKERCAAIANPFYRKALGSAAAKWESVKADQLKRARQTLGMDEEVAHEMHKEVYR 352          
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: A0A835YSG6_9STRA (IAP100 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSG6_9STRA)

HSP 1 Score: 254 bits (648), Expect = 3.590e-74
Identity = 129/258 (50.00%), Postives = 188/258 (72.87%), Query Frame = 1
Query:   37 QAVLTGVIPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGNITPVELKETLGSFGLEGEDAEDILVEIFSKYVVAMCQHSATKTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMFEVCDTEEAYSFEMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKWDAVKAEQLQRARKTLGMQDDVVTEMHKTVYR 810
            +AV TG+IP A+ VG+L+ P  KV VSA+GAAV+G+ G +A++KL    + +APA VA LL++KG+ N+ P ++   L ++G++G++A D+L++++ ++++AMC+ SATK ++I+EL  LR+ LGLDG  +G A Y+A++ +Y + V  TP  ELADE++P RR+LDKFLFL DRMFEV DTEEAY +EM RI K+F +   DV +RC AIA PFY KAL +AAA+ D ++   L+ A KTLG+ D +  EMH   YR
Sbjct:   36 KAVSTGLIPAAAVVGFLITPGGKV-VSAVGAAVTGLAGTLAKRKLGDESKAAAPAAVAELLQSKGLTNVRPADITAVLATYGVQGDEASDLLIDVYRRFLLAMCKGSATKAADIRELRDLRQALGLDGEQIGTAHYEASTLLYRERVLFTPEEELADEYNPARRALDKFLFLADRMFEVSDTEEAYEYEMGRIRKVFGLDAADVNARCLAIARPFYAKALDAAAARLDTLRPGALELAEKTLGITDVMRDEMHLEAYR 292          
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: A0A7S4MJ83_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MJ83_9STRA)

HSP 1 Score: 170 bits (430), Expect = 3.180e-44
Identity = 94/257 (36.58%), Postives = 160/257 (62.26%), Query Frame = 1
Query:   49 TGVIPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGNITPVE-LKETLGSFGLEGEDAEDILVEIFSKYVVAMCQHSATKTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMF-EVCDTEEAYSFEMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKWDA--VKAEQLQRARKTLGMQDDVVTEMHKTVY 807
            T  IP A+A+G+L+ PS ++A  A+G+A++GV G++ + ++  A   +A   +A+ +   GV +    + + +   +FG+E ED E++  +++ +Y+  M ++   KT ++KELSQLR  L +D L +GEA   AA   Y Q    TP  +L D   P+R S+DKFLFL +R F +  +T+EA+ FEMSR++K F I L +   R A ++ PFY +AL S  +K ++  V ++ L+RARK+LG+ D + +++H + +
Sbjct:  107 TAAIPAAAALGFLMTPSRRLAAHAVGSAITGVAGIIGKSRIDAATEAAAKPAIAQAIIDLGVDDDGLADAIADVKDTFGVEDEDFEEMCSDVYRRYLTGMVKNPIAKTGDLKELSQLRAALEMDNLGVGEAHASAAKEFYRQTCLFTPEEDLDDPGHPDRMSIDKFLFLSERAFRQAGETDEAFKFEMSRVAKAFKIQLDEALDRVAEVSEPFYRRALASTRSKLESGQVSSDMLRRARKSLGIDDVMASDLHISTF 363          
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: A0A7S2UAH8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAH8_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.250e-36
Identity = 96/268 (35.82%), Postives = 153/268 (57.09%), Query Frame = 1
Query:   58 IPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGNITPVELKETLGS----FGLEGEDAEDILVEIFSKYVVAMCQHSA-TKTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMFEVC-DTEEAYSFEMSRISKIFDI--------------TLPDVKSRCAAIAGPFYDKALTSAAAKWD--AVKAEQLQRARKTLGMQDDVVTEMH 795
            +PV++ VG+++ PS ++A   +G+ V+G  G + + +L  A   +A   +A+ +   G+   +   L   + S    + +E  D E    +I+  Y++ M +++   KT+E+KEL +L++ LGL  LL+GEA   AA  +Y Q    TP  ELAD   P+R +LDKFLFL +R F    +T EA+S+EMSRI+K FDI               + ++  R A +A PFY +AL S  AK D  AV+ + L+RAR T+G+ ++V  +MH
Sbjct:  104 VPVSAVVGFVMTPSRRLAAHTVGSIVTGSLGAIGKSRLDMAASAAALPAIAQAVIDHGLDASSEASLTSAIASVKSTYNMEDGDFEAACGDIYKSYLIGMVKNNPIAKTAELKELVRLKDVLGLGNLLVGEAHATAAKDLYRQTCLFTPEEELADVDHPDRMALDKFLFLSERTFVGNGETPEAFSYEMSRIAKAFDIKITKSNAAAADVGGAMSEIMERVAHVAEPFYRRALVSTRAKLDSGAVQPDVLKRARATVGISEEVARDMH 371          
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: A0A448YYM0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYM0_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.770e-35
Identity = 94/257 (36.58%), Postives = 150/257 (58.37%), Query Frame = 1
Query:   58 IPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGN--ITPVELKETLGSFGL-EGEDAEDILVEIFSKYVVAMCQHSAT-KTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMFEVC-DTEEAYSFEMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKWDA--VKAEQLQRARKTLGMQDDVVTEMHKTVY 807
            IPV++A+G+ ++PS ++A  A GA ++GV G V + KL      +A   +A+ +   G+ +   T   +K    S G+ + ED + +  +++SKY++ M + +   K+SE KEL +L+ +LGLD LL+GEA   AA   Y      TP  +L D   P+R+++DKFLFL +R  +   +T+EA+ FEM+R++K   ++L D   R A +  PFY +AL S  AK     V    L+RAR+TLG+ DD   +MH   +
Sbjct:   96 IPVSAALGFGIVPSRRLAAHAAGAIITGVAGAVGKSKLDAVTEAAALPAIAQAIIDHGIEDPATTYGYVKSLQESHGIVDSEDFQLLCADVYSKYLLGMVKFNPMPKSSEPKELGKLKASLGLDNLLVGEAHAAAADEWYRTTCLFTPEEDLEDPDHPDRQAMDKFLFLTERALKQGNETDEAFRFEMTRVAKSMKLSLMDAMFRVADVQQPFYARALVSTRAKLGEGKVSGAMLERARQTLGIDDDTAHDMHVACF 352          
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: B7GEF3_PHATC (Translocator of the inner chloroplast envelope membrane 110k n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GEF3_PHATC)

HSP 1 Score: 144 bits (362), Expect = 3.780e-35
Identity = 91/258 (35.27%), Postives = 150/258 (58.14%), Query Frame = 1
Query:   58 IPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGN----ITPVELKETLGSFGLEGEDAEDILVEIFSKYVVAMCQHSAT-KTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMFEVC-DTEEAYSFEMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKW--DAVKAEQLQRARKTLGMQDDVVTEMHKTVY 807
            IP+++A+G+ ++PS ++A   +GA  +G+ G V + +L      +A   +A+ +   G+ +       VE  +T   FGL  ED   +  EI++ Y++ M +++ T KTSE+KEL  ++  L LD L +GEA   AA+  Y      TP+ +L D   P+R+++DKFLFL +R  +   +T+EA+SFEM R++K FD++  +V  R A    PFY +AL S  +K   + V +  L+RARKTLG+ D    ++H   +
Sbjct:  118 IPLSAALGFGLVPSRRLAAHTVGALFTGIAGAVGKSRLDALTESNAKPAIAQAIVEAGLDDPDKAAAAVENVKT--QFGLLDEDFAILTTEIYTAYLLGMVKYNPTAKTSELKELETVKNVLQLDNLQVGEAHAAAAAEWYRTTCLFTPTEDLEDPSHPDRQAMDKFLFLTERALKQGGETDEAFSFEMKRVAKAFDLSYTEVLERVAETVEPFYQRALKSTRSKLGTNQVSSAMLERARKTLGVSDATAKDLHVACF 373          
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: A0A7S4EEP3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEP3_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.030e-33
Identity = 93/259 (35.91%), Postives = 146/259 (56.37%), Query Frame = 1
Query:   58 IPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGNITPV-----ELKETLGSFGLEGEDAEDILVEIFSKYVVAMCQHSAT-KTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMFEVCD-TEEAYSFEMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKWDAVKAEQ--LQRARKTLGMQDDVVTEMHKTVY 807
            IPV++A+G+ ++PS ++A  A GA V+GV G + + KL       A   +A+ +   G+ +          LKET G   ++ +D + +  +++SKY++ M + +   K+SE KEL +L+  LGL  LL+GEA   AA   Y      TP  +L D   P+R+++DK LFL +R  +  D T+ A+ FEM+R+SK   ++L D   R A +  PFY +AL S  AK    K  +  L+RAR+TLG+ DD   +MH   +
Sbjct:  110 IPVSAALGFGIVPSRRLAAHAAGAIVTGVAGAIGKSKLDAVTESVALPNIAQTIIDYGIEDPATTYGYVKSLKETHGI--IDDDDFQLMCADVYSKYLLGMVKFNPMPKSSEPKELGKLKTALGLSNLLVGEAHAAAAEEWYRTTCLFTPEEDLDDPDHPDRQAMDKLLFLTERALKQGDETDAAFRFEMARVSKFMKLSLVDGMYRVADVQQPFYARALVSTRAKLGEGKVSEAMLERARQTLGIDDDTAHDMHVACF 366          
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: A0A7S4C080_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C080_CHRCT)

HSP 1 Score: 133 bits (335), Expect = 1.450e-31
Identity = 85/261 (32.57%), Postives = 147/261 (56.32%), Query Frame = 1
Query:   28 VIIQAVLTGVIPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGNITPVELKETLGSFGLEGEDAEDILVEIFSKYVVAMCQHSATKTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMFEVCDTEEAYSFEMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKWDAVKAEQLQRARKTLGMQDDVVTEMHKTVYR 810
            ++ Q  +  V+  ++A G+ + PS K+A++A+G A++G  G+V RKKL   RR+SA   VA LL +KG+  +T  EL       G++ +  +  L E++  ++ +  +    +TSE+ EL +L E L L     G  +Y A   +YS+   R    + AD  S ++R L+KF+F+ +R+  + ++EE Y +E +R+ KIF ++  + K+R    A PFY++ L     +  +V AEQL R R +LG+ D     +H  V++
Sbjct:   40 IVAQGTMASVVAASAAAGFFLTPSRKLALNAVGGAITGGLGLVVRKKLSDQRRDSAAIGVANLL-SKGLDAVTASELAAVAEHHGVDKQAFQKQLAELYFVFLSSCMESPRIETSELSELKKLIELLRLSHAQTGMQVYAAGRALYSRH--RAYIEDEAD--SDSKRLLNKFIFIAERLLSLDESEEGYRYEATRLQKIFSLSASEWKTRAEDAATPFYEQTLDMIV-QGKSVSAEQLSRVRASLGISDAKADTLHADVFK 294          
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: R1ELU4_EMIHU (Tic110 n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ELU4_EMIHU)

HSP 1 Score: 133 bits (335), Expect = 1.460e-31
Identity = 81/254 (31.89%), Postives = 142/254 (55.91%), Query Frame = 1
Query:   49 TGVIPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGNITPVELKETLGSFGLEGEDAEDILVEIFSKYVVAMCQHSATKTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSL-DKFLFLCDRMFEVCDTEEAYSFEMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKWDAVKAEQLQRARKTLGMQDDVVTEMHKTVY 807
            T ++  A+AVGY++MPSS++AV+A+GAA +G  G+V RKK+ + RRE+     A LL+ +G+  +T  E+     +FG++    +  L E+F  Y+ A  +      +E+ EL QL+E LG+    +G  +Y A   +YS+  A   S   ++  + + ++L  K++FL +R+F   ++EE Y +E  R  ++F ++  D   R  A+A PFY   L  A  +     A QL   R +LG+ +    ++H+ ++
Sbjct:   75 TALVAAAAAVGYVLMPSSRIAVNAVGAAATGALGLVGRKKIDEERREAXXXXXAALLK-RGLSAVTADEIASLAPAFGVDKPRYQKQLSELFLYYLSACLEGKQVLPAELSELLQLKELLGMSAAQVGNQVYAAGRALYSRHRAYLESDVESEPLAADAQALLSKYIFLAERLFAKDESEEGYRYESLRAQRLFGLSPADWSDRAEAVAVPFYAGTLDKAVLQAVPATAAQLGGMRDSLGVSEATAAQLHRDIF 327          
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Match: A0A7S0LEM0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LEM0_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 3.110e-30
Identity = 84/257 (32.68%), Postives = 138/257 (53.70%), Query Frame = 1
Query:   37 QAVLTGVIPVASAVGYLVMPSSKVAVSAIGAAVSGVGGVVARKKLVQARRESAPAQVARLLETKGVGNITPVELKETLGSFGLEGEDAEDILVEIFSKYVVAMCQHSATKTSEIKELSQLRETLGLDGLLMGEALYQAASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMFEVCDTEEAYSFEMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKWDAVKAEQLQRARKTLGMQDDVVTEMHKTVY 807
            Q  + GV+  A+A GY +MPSSK+AV+AIG AV+G  G++AR +LV+ R+++A   VA LL  KG+  ++   +       G+  +  +    E+F  Y+ ++ +    +T+E+ EL +L + L L    +G  ++ A   +YS   A     E +D     +R LDKF+FL +R+    ++EE Y +E  R+ +IF +++ +  SR    A PFY K L SA  +  +  + QL   R  LG+       +H  VY
Sbjct:   92 QGAMAGVVAAAAAAGYALMPSSKIAVNAIGGAVTGGVGLLARARLVEQRKDAASLAVAVLL-AKGIDTVSDDAISAVGDRHGVGKKRFQQQKAELFLLYMNSVLRKPDIETTELSELKRLIKVLRLSNAQVGMQVHAAGRTVYSTNRAYIEDEEDSD----GKRILDKFVFLAERLIAADESEEGYKYEAMRLQRIFSLSVGEWNSRAEDAAVPFYRKTLDSAVMQGASATSAQLVTVRDALGVSASKAQSLHDEVY 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17151.3989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KG25_9PHAE2.400e-12980.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YSG6_9STRA3.590e-7450.00IAP100 protein n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S4MJ83_9STRA3.180e-4436.58Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2UAH8_9STRA3.250e-3635.82Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448YYM0_9STRA2.770e-3536.58Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7GEF3_PHATC3.780e-3535.27Translocator of the inner chloroplast envelope mem... [more]
A0A7S4EEP3_9STRA2.030e-3335.91Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4C080_CHRCT1.450e-3132.57Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
R1ELU4_EMIHU1.460e-3131.89Tic110 n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=... [more]
A0A7S0LEM0_9EUKA3.110e-3032.68Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17151contigH-paniculata_contig17151:357..5286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.7
Seed ortholog evalue2.6e-109
Seed eggNOG ortholog2880.D7FN32
Preferred nameTic110
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Chloroplast envelope transporter
EggNOG OGs2CXZA@1,2S0W8@2759
Ec32 ortholog descriptionIAP100 protein
Ec32 orthologEc-25_001370.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size819
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17151.3989.1prot_H-paniculata_contig17151.3989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17151 357..5286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929354.3603952-CDS-H-paniculata_contig17151:356..6051622929354.3603952-CDS-H-paniculata_contig17151:356..605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 357..605 -
1691480827.4746234-CDS-H-paniculata_contig17151:356..6051691480827.4746234-CDS-H-paniculata_contig17151:356..605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 357..605 -
1622929354.3800342-CDS-H-paniculata_contig17151:1110..12331622929354.3800342-CDS-H-paniculata_contig17151:1110..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 1111..1233 -
1691480827.4850085-CDS-H-paniculata_contig17151:1110..12331691480827.4850085-CDS-H-paniculata_contig17151:1110..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 1111..1233 -
1622929354.3950393-CDS-H-paniculata_contig17151:2159..22881622929354.3950393-CDS-H-paniculata_contig17151:2159..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 2160..2288 -
1691480827.4929707-CDS-H-paniculata_contig17151:2159..22881691480827.4929707-CDS-H-paniculata_contig17151:2159..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 2160..2288 -
1622929354.4081218-CDS-H-paniculata_contig17151:3211..33251622929354.4081218-CDS-H-paniculata_contig17151:3211..3325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 3212..3325 -
1691480827.5012872-CDS-H-paniculata_contig17151:3211..33251691480827.5012872-CDS-H-paniculata_contig17151:3211..3325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 3212..3325 -
1622929354.421083-CDS-H-paniculata_contig17151:4061..41411622929354.421083-CDS-H-paniculata_contig17151:4061..4141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 4062..4141 -
1691480827.5135634-CDS-H-paniculata_contig17151:4061..41411691480827.5135634-CDS-H-paniculata_contig17151:4061..4141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 4062..4141 -
1622929354.4353616-CDS-H-paniculata_contig17151:5162..52861622929354.4353616-CDS-H-paniculata_contig17151:5162..5286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 5163..5286 -
1691480827.5296912-CDS-H-paniculata_contig17151:5162..52861691480827.5296912-CDS-H-paniculata_contig17151:5162..5286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17151 5163..5286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17151.3989.1

>prot_H-paniculata_contig17151.3989.1 ID=prot_H-paniculata_contig17151.3989.1|Name=mRNA_H-paniculata_contig17151.3989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MIGRDVSFYVIIQAVLTGVIPVASAVGYLVMPSSKVAVSAIGAAVSGVGG
VVARKKLVQARRESAPAQVARLLETKGVGNITPVELKETLGSFGLEGEDA
EDILVEIFSKYVVAMCQHSATKTSEIKELSQLRETLGLDGLLMGEALYQA
ASPIYSQFVARTPSTELADEWSPNRRSLDKFLFLCDRMFEVCDTEEAYSF
EMSRISKIFDITLPDVKSRCAAIAGPFYDKALTSAAAKWDAVKAEQLQRA
RKTLGMQDDVVTEMHKTVYRCV*
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mRNA from alignment at H-paniculata_contig17151:357..5286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17151.3989.1 ID=mRNA_H-paniculata_contig17151.3989.1|Name=mRNA_H-paniculata_contig17151.3989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4930bp|location=Sequence derived from alignment at H-paniculata_contig17151:357..5286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGGGCGGGACGTATCTTTTTATGTCATAATCCAGGCTGTGTTAAC CGGCGTCATCCCTGTGGCGAGCGCTGTGGGCTATTTGGTGATGCCCAGCT CCAAGGTTGCCGTTTCGGCAATAGGTGAGATGAAAACACTTGAAAATAGT ATGGAAATCGTTCCGAAATGTGAGTTATTTAAAACGATCATGTGTGGAGA TTGCCGTTTCGGCTGCAGGTTTGATGAAAACACCTGAATAAATAATAAAA TGTTTCCAACATGGTGATGTGAAATGTTTAGCGTATAATTGAGGGTTTTT TTGCAGATATCGGACAGCAATGAGGAAAAATATGTCGACAAAATACAAAA AAACTGTCCTGAATACTATACTTGATGTATACAAGTATATTCATGTTGTT CCTGCCTTTGTTATTTTCCAGACTTGAAATGCCTGCTTTTTCACAGCTGC CACTTGTGAATGCCTCACACCCGGGATCTGCTCACGAGGGGTTGTCAATC TTGCAAAGAGCTGTAGTCACTCTGTCCATGGAGAGTTGTCTTTTGCAGCT TCTTGAGTATCAGGTACAAGTGCGATGAAAAACCCTTTCAGAAAGGCGAC CGTAGCACATCATATATCTTGTTTTGAGAGTGTAATTACTGCACCTTTCA TAACCGATGATTTTTTTTTTGCTTCCTGCAATAGCAAGTACCCTTTCCCG TTATATACCCCCCCGTCACCATTATTGTGTATAGTCTGTTGCCCAGTGTT GACTTATTGCTTCTTGAATATATTGATGTATATGAATACTGGTGGCGATT AGTCCGCATGAAAGTTTCCATTCCCCGTACAAAAATCCGAATACTTGCAA ATGATTTTCACAAAAAACTGAAAGTATTCGCCTGAATTTCAGAATAAGCT CTTGTATTTCATGTGCCCCGGACCATCACACAACTCCTGATGATACTTGT AAATTGAATGGACAGGGGTGGGTACTTAATTCCACGTGTCCGGACATTCT GAAACTCAGACGAATACTTTCAGTTTTGTTTTTTTCCAACATTTGCAAGT ATTCGTATTTGTCCGGGGGGTGGAACTGTTATCCTTTCTGTCATCTTGTA TGATATATTTTAACCCTAAAACGCGATGTCGGTGTATGTTCTCAGGCGCT GCCGTGAGCGGTGTTGGAGGTGTGGTGGCGCGGAAAAAGCTTGTACAGGC CAGGAGAGAGTCGGCACCAGCGCAGGTACTCCTTTTTTTATATTTTTTCA TCACATCAGGCTATGACTGTAGCCAAGTCTCTTTTGTTGCAGAAATACTT TTTTGCGTTTTCGTCATCACATTAGACTTACAACTGTACCACAGTCCCGT TGGTTCACGACAACTTTGTACAGCGTAAAAAGTGAACAGCCCCAGTATAA TGGAGTTTTCTTGCGACTGGAGTCTACCGATTGCCGCTGCCCCCTGTCGC CTGATCACGTCCTTTTTTTCGGGTCATGCAGTATAATACAGAACGTTATG GTTTTTTCCAACAGGGAGTTGATGGGTAAGTTTGTGTTTGTTAGAGGTGG AGGAGGATAGCGGAAATTCGCCAAAATTGCAGCTTGTTTTTTTGTAACAG TGAGACCTCTTCAAGTTTTGCGATCGATTTCGTTCGTTCCTGTATTCACG TGTATTGGTACAAAGCTTGGTACGTGGACATCGCCACTCCCCCCCTCGAC GGTGCCTTGTTATTCGAGGCAGGTTTTGTTGTACATGTTGGCATTTTTGA CAGTTTGTTCTTGTTGGTACATGAATAGTTCCTTTCTGTCAAATGTGTGT TTCCGCTAGATTCCCTTCTCTTGAGCCCTTGTTCTTTAACCTAGTAATCG GTTTTAGTTAGCATGCCTGCACACATGCTTGCTACAAAAAATAGTCATAG ACCGTTTTTGTTTTTTGACCCTGTGTTTGGCTTTTGGTGCTTTTCTCCCC TCTCTATTCAGGTGGCGAGGTTGCTCGAAACTAAAGGTGTTGGAAACATC ACTCCCGTCGAACTGAAGGAGACCCTGGGTAGCTTCGGGTTGGAAGGAGA GGATGCGGAGGACATCCTCGTCGAGGTTGTCCTTATTTGAGTAGTAATGA CTACAAACGTTTTCGCCAAATACAGTGGTTCTTTTACCTTTGAGTTGGTT CTTTTGTCGTTGGGTACATACGGAATAGGACGGGGGTAAACTTTCTGAAG CCTTTGTCTTTCCGCTCCTCCCTTACTCATAGCGTGTCGCCTGACATCCA GTCTACGTGCTCTGCTTGTTGCCGGATTTACGGATGGCCTCTTTCGTCCC ATACGTGTTCATCTTTTGTACCTTTTTTTCTCTCGTGAACAACACACGCA GTAGGCTACCTGTATACGCCAGTGAATTACAGGTGTAACCATTGTACTTG GCGTAGAATTGGACAGCGCATCAACCTCTTTTTTTTTATCCAAGCAACCG TGAGATAATACCGAATGCACGAAGATATCGGACTCTAGAAGGACACATGG ATGTATGTATTGGATATTTCGGAGAGTTGGATCATAATTACGCTCAGTCG TTTAGGCATAGAAATCGGCTGTGACATGGATAATAACATACTACTTGATT ACGGTTACAGGGGTAGCTCCTGTCATTATCATTCAGGTGTTTCCACGGGT GTTTTCGCGGAGGTGGATTTACCGCGGTATAACCGCTGATAATGTCAATT ACCATACCGTGGTTTTATGCGGTAAATCGACCTCTTCTAAAATACGAGGA AAAACAATGTGTCACATAATATTCACCGTATTGATACCACAATCAATCTG CAACCATTGACCATTCATGATTTGAGGGCGACTCTTTTTTTGGTGATCAC TGCTGTCGTCTTTTAAAAACCGTTATCCACAAGACGATACGGCGGAGATT CCTGGAAGATACGGGATTTTCACCGGATCATTGTTTTGCGCTTTGCCTCT TGAACGGTTCTCTCTCTCTCTTCGTGCAAATCGAACGTGAGCCCTTAGAT CTTCTCCAAGTACGTGGTGGCGATGTGTCAGCACTCCGCGACCAAGACAA GCGAGATCAAGGAGCTCAGTCAGCTCAGGGAGACGTTGGGCCTTGACGGA TTGCTCATGGGAGAGGCTCTTTACCAGGTATTGTTCTATTCATGTTGATG TTTCGAAATCGAATACGAATGAGCTAGGCCCTCTAGCGCCAGGTGGTCGT TTCCCACGGTCGTTGTTAGTCGTTTATTAGGCTTGCCTTTGAGAGCCTGC GGCCTTCCAATTGGGTGTCCAAAGATTGTGTTCTAGACTTGTGGATCGCT GTAGATAATAAAACTCTATGATAGACTGCCTCTACTCTGAATCCAAGACG AAAAGGGACTCGGTTGGGAAAAAACAACAGGATAGAAGTTCGGTTTTGGA CGTGAGATGCGTTAACCAGCTATCCAGAGTATTGTGTTGACGTATTGGTC ATTATTCATTATTCCCGATCTGATCCTTGGGCAAATTCATGATTTGGTCG CGTTGAGGTTTGATTGCTGAACGGGTTTGATCATGTAAGGGCGACATGCT TCAACCATGAACAGGACTGACCACCTCGTGGTGCCGTGGACGTTATGAAG GCAACTAGGGGAGCTTACTCGTCTGATTGCTGATTCTGCTTTATTTGGAT GGAACGTGAAGCTGCGAGTGCATACCAATGTCTGGGAGCTTTGATTGATG CCTTCATCTGCTTATAGAACAATGCGAGCGGTTGGCTCATGAATCTGCAG TAGTGTAACGACCCAGAGTTGAAGCTTACGGCTGAAGATCCGAAAAAAAA AGGCAATGCTATTTTTTTTTTCTTTTTCTTTTTTTTCCCATTGTTATAGA CACTTTTGAATACGTTACAAGAAGGGCTTTAAAACTTGAACACCTGGCTC GTGCAGCCTTGTGAGCTAGCTTGGCAATGTCGTTGTCAGCCAGTCACTCG AATGTATTTTATGTATTTGCTTGTTTCCATCTCTCCCCTGACCGTGTTTC CCTTCTGCTGATCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG CAGGCCGCGTCGCCCATTTATTCGCAGTTCGTGGCGAGAACGCCCTCGAC CGAACTAGCGGATGAATGGTCCCCCAACAGACGCTCGCTCGACAAATTTT TGTTCCTCTGTGACCGTATGTTTGAGGTACGTGTGGGTGGATCTCGTCGG GTGTTTTCTTGGCGGTTGTTTCGGTTTTTTTTTGTTTTTTTTTTCCATTG TTGATTTCAGCATGGTTGAAAATAAGGAACAAGATATATTTGATCTTTCT TCGCAAGATTAGTTAGTTAGTAAGTAGTAGATGGGCTGTACGAGTTGTCC GGGCATGTAGACCGAGGCTTGTTAAATCACACAGCAAATACCAAAGGAAA CGCACAATATGTGGTGGTTTTTTGCCCACCAAAACAGAACAAAAATGGCA TTTCTTTCTCTATGTGCTTATTTCTTGAACGATGACTAGTATCCCTTGTC ACTATTTTTCTGTTATCGAGAACCTATATGATGAGTGCCCGAACTATTGT CATGCTTCATTTTTCAAGCATATGTGTACGTTTCATATATATATATATAT GTTTGCAAATATTTGCCCACAAAAAGCACAAAAGCGGCCTCGCGACACAT TTACACACAACTGCTGCACACACAAAAACAGGTTTGCGACACGGAGGAGG CATACTCTTTTGAGATGAGCCGCATCAGCAAGATCTTCGACATCACCCTG CCAGATGTGAAGTCGCGCTGCGCCGCCATCGCGGGCCCCTTTTACGACAA GGCCCTTACCTCCGCCGCCGCCAAATGGGATGCCGTGAAGGCAGAGCAGC TCCAGCGTGCGCGCAAGACCCTGGGCATGCAAGACGACGTGGTAACGGAG ATGCACAAGACAGTCTACAGGTGCGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17151:357..5286-

>mRNA_H-paniculata_contig17151.3989.1 ID=mRNA_H-paniculata_contig17151.3989.1|Name=mRNA_H-paniculata_contig17151.3989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig17151:357..5286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGGGCGGGACGTATCTTTTTATGTCATAATCCAGGCTGTGTTAAC
CGGCGTCATCCCTGTGGCGAGCGCTGTGGGCTATTTGGTGATGCCCAGCT
CCAAGGTTGCCGTTTCGGCAATAGATGATCGGGCGGGACGTATCTTTTTA
TGTCATAATCCAGGCTGTGTTAACCGGCGTCATCCCTGTGGCGAGCGCTG
TGGGCTATTTGGTGATGCCCAGCTCCAAGGTTGCCGTTTCGGCAATAGGC
GCTGCCGTGAGCGGTGTTGGAGGTGTGGTGGCGCGGAAAAAGCTTGTACA
GGCCAGGAGAGAGTCGGCACCAGCGCAGGCGCTGCCGTGAGCGGTGTTGG
AGGTGTGGTGGCGCGGAAAAAGCTTGTACAGGCCAGGAGAGAGTCGGCAC
CAGCGCAGGTGGCGAGGTTGCTCGAAACTAAAGGTGTTGGAAACATCACT
CCCGTCGAACTGAAGGAGACCCTGGGTAGCTTCGGGTTGGAAGGAGAGGA
TGCGGAGGACATCCTCGTCGAGGTGGCGAGGTTGCTCGAAACTAAAGGTG
TTGGAAACATCACTCCCGTCGAACTGAAGGAGACCCTGGGTAGCTTCGGG
TTGGAAGGAGAGGATGCGGAGGACATCCTCGTCGAGATCTTCTCCAAGTA
CGTGGTGGCGATGTGTCAGCACTCCGCGACCAAGACAAGCGAGATCAAGG
AGCTCAGTCAGCTCAGGGAGACGTTGGGCCTTGACGGATTGCTCATGGGA
GAGGCTCTTTACCAGATCTTCTCCAAGTACGTGGTGGCGATGTGTCAGCA
CTCCGCGACCAAGACAAGCGAGATCAAGGAGCTCAGTCAGCTCAGGGAGA
CGTTGGGCCTTGACGGATTGCTCATGGGAGAGGCTCTTTACCAGGCCGCG
TCGCCCATTTATTCGCAGTTCGTGGCGAGAACGCCCTCGACCGAACTAGC
GGATGAATGGTCCCCCAACAGACGCTCGCTCGACAAATTTTTGTTCCTCT
GTGACCGTATGTTTGAGGCCGCGTCGCCCATTTATTCGCAGTTCGTGGCG
AGAACGCCCTCGACCGAACTAGCGGATGAATGGTCCCCCAACAGACGCTC
GCTCGACAAATTTTTGTTCCTCTGTGACCGTATGTTTGAGGTTTGCGACA
CGGAGGAGGCATACTCTTTTGAGATGAGCCGCATCAGCAAGATCTTCGAC
ATCACCCTGCCAGATGTGAAGTCGCGCTGCGCCGCCATCGCGGGCCCCTT
TTACGACAAGGCCCTTACCTCCGCCGCCGCCAAATGGGATGCCGTGAAGG
CAGAGCAGCTCCAGCGTGCGCGCAAGACCCTGGGCATGCAAGACGACGTG
GTAACGGAGATGCACAAGACAGTCTACAGGTGCGTGTAGGTTTGCGACAC
GGAGGAGGCATACTCTTTTGAGATGAGCCGCATCAGCAAGATCTTCGACA
TCACCCTGCCAGATGTGAAGTCGCGCTGCGCCGCCATCGCGGGCCCCTTT
TACGACAAGGCCCTTACCTCCGCCGCCGCCAAATGGGATGCCGTGAAGGC
AGAGCAGCTCCAGCGTGCGCGCAAGACCCTGGGCATGCAAGACGACGTGG
TAACGGAGATGCACAAGACAGTCTACAGGTGCGTGTAG
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