prot_H-paniculata_contig1714.3983.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1714.3983.1
Unique Nameprot_H-paniculata_contig1714.3983.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length855
Homology
BLAST of mRNA_H-paniculata_contig1714.3983.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 7.470e-47
Identity = 205/736 (27.85%), Postives = 284/736 (38.59%), Query Frame = 0
Query:   56 PHEGLLRLTQANTLLGQAD-----MEEIEELLTDSLNEYVEVARGLCEG---HSDKTAIVEGLPQAISVYMHFEEVLPPAIDLVRWFCSAHMICLEKLACEMATATARWKTPATGRGCPNEENGDT----------------------AQKALRILRLLIAGFRTFLDGAR--SRLFCSENHLKNLQHAVGYARETVRCIVEECSGPDPTVGKAVARLKGLLATSCFIRLHNAAFDN---------------------------RIPSGTQQLFNWGNKDVGKLLKCIAQEEKIPNIAYLQLEGNCIEALGVLCSVAIAAPQVFAMIACGFADAIKCMNAASAG----TWGRRPALQHITVRHTAIACAAHLADRLGKS----PDGNRSDAARKLWTALSDCCIMQTGEYVCDALPAP-----GSAGAQAMAEIRSHSGVRSSSPRAFSDLTIAVPNRGDDVSKPDVSATEHRGWILGSVAEHTTSGNVATGNKRCRPAHSPREHPAGNNVADSRGAN-DQGVNGSTSPMNVKDENLTDNRGKSDPVDKSQLPPEPPRTMRHKRPRS---LDEGPTQNRSTHDXXXXXXXXXXXXXXXXXEWRDGGHYKVVLGESFKRPG---------------------NHGSGGAVDES-SNAGHCVHFKYDFIPGRTDVDATAMLTQRPLGGDEAENIARTGGTNEGL-------RWTAEMKYRSRHTENPGPVHFSGHASR 686
            PH+GL ++ QA +LL  A      ++ +++LL  S   Y++ A  L      ++D  AI +G PQA  + +  E V P AI LVRWFCS H+  L ++A  M     R +                                      A++A+R+LR+L+  F  FL  +   S +F +  H++ L  AV  AR+ +  +  ECS  DP+VGKA ARL+GL A +CF  + + A D                                 +  L   G KDV KLL C++  E   +  YL L   CIEA+G L  VA  AP+ +A IA  FA A++CM   + G     W RRPAL    VRHT  AC  +LA+ L  +    PD +R     KL +AL  C +M+   +V D  P P        G+   AE  +   V  S                        SA++  G    S            G +             G  +A   G   D     +T                                     P +   + +G   + +                     WR+G  Y VVLG+SF   G                       G  G  D   SN G  VH KYDF+PGRT++D  A L QRPL  +E     R  GT   +       RW AE++Y SR   NP PV F+G A R
Sbjct:   43 PHQGLQQIEQARSLLEAAPGDGGGVDRVKKLLVQSKAAYLQAASALAAAGGENTDVAAISQGAPQAALICVASEAVFPEAIALVRWFCSKHVASLCEVAQAMEIEAKRLEKQGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAERAIRLLRVLLGSFNAFLQQSSLGSGMFSTSAHVRVLDIAVSLARKAIERLSRECSA-DPSVGKAAARLRGLTAAACFAPV-SPALDGGGEADXXXXXXXXXXXXXXXXXXXXXXXXAPNSDNLDRMGKKDVDKLLMCVSGGEAKKDEVYLSLPCICIEAIGALRRVATLAPRTYATIAEAFAAALRCMTRGAVGGPEGEWTRRPALNDANVRHTLFACCCNLAEGLPAAACPPPDDSRLRGRGKLVSALKACHVMRG--FVADGHPLPLATAQPGGGSGEAAETAAGVVVGGSGAAGIGSACAXXXXXXXXXXXTTGSASKTAGKPTPSAXXXXXXXXXXXGEEE------------GPTMAALFGEEEDNEPESATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAGIDVADGAMPSAAAAPATKSYPPLQTAPEKMPA-WREGERYGVVLGDSFYGSGXXXXXXXXXXXXXXXXXXXXXRRGLVGDDDTGESNPGQYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWKGRGSGTGGDVVGGGQQQRWAAEVEYESRDPSNPEPVRFTGDAVR 761          
BLAST of mRNA_H-paniculata_contig1714.3983.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.110e-43
Identity = 139/410 (33.90%), Postives = 203/410 (49.51%), Query Frame = 0
Query:   56 PHEGLLRLTQANTLLGQAD-----MEEIEELLTDSLNEYVEVARGLC---EGHSDKTAIVEGLPQAISVYMHFEEVLPPAIDLVRWFCSAHMICLEKLACEMATATARWKTPATGRGCP----------------------NEENGDTAQKALRILRLLIAGFRTFLDGAR--SRLFCSENHLKNLQHAVGYARETVRCIVEECSGPDPTVGKAVARLKGLLATSCFIRLHNAAFDN------------RIPSG--TQQLFNWGNKDVGKLLKCIAQEEKIPNIAYLQLEGNCIEALGVL-----CSVAIAAPQVFAMIACGFADAIKCMNAASAG----TWGRRPALQHITVRHTAIACAAHLADRLGKS----PDGNRSDAARKLWTALSDCCIMQTGEYVCDALPAP 406
            PH+GL ++ QA +L+  A      ++ +++LL  S   Y++ A  L    E ++D +AI +G PQA  + +  E V P AI LVRWFCS H+  L +++  M     R +  +                            +E +G  A++A R+LR+LI+ F  FL+ +   S +F +  H++ L  AV  AR+ +  +  ECS  DP+VGKA ARL+GL A +CF  + + A D             ++P+   +  L   G KDV KLL CI+  E   + AYL     C+EA+G L       VA  AP  +A IA  FA A++CM   + G     W RRPAL    VRHT  AC  HLA+ L  +    PD +R     KL +AL  C +M+   +V D  P P
Sbjct:   45 PHQGLQQIEQARSLVEAAPGDGGGVDRVKKLLVQSKAAYLQAASALAAAGEENTDVSAISQGAPQAALICVASEAVFPKAIALVRWFCSKHVASLCEVSQAMEIEAKRLEKQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGSGTRAERATRLLRVLISSFNAFLEQSSPGSGMFSTAAHVRVLDIAVSLARKAIERLSRECSA-DPSVGKAAARLRGLTAAACFASV-SPALDGGGEADEKSQTKEQVPAAPNSDNLDRMGKKDVDKLLVCISGGEGKKDEAYLSPPCICVEAIGALRRQEKSVVATLAPPTYATIAEAFAAALRCMTRGAVGGPEGEWSRRPALNDANVRHTLFACCCHLAEGLPAATSPPPDDSRLRGHGKLVSALKACHVMRG--FVTDGHPLP 450          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1714.3983.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRR3_ECTSI7.470e-4727.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP83_9PHAE4.110e-4333.90EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019194Transcription elognation factor Eaf, N-terminalPFAMPF09816EAFcoord: 587..714
e-value: 8.8E-10
score: 38.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1714contigH-paniculata_contig1714:9130..15451 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1714.3983.1mRNA_H-paniculata_contig1714.3983.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1714 1077..15864 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1714.3983.1 ID=prot_H-paniculata_contig1714.3983.1|Name=mRNA_H-paniculata_contig1714.3983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=855bp
MDGSTNGVGINQVALPVQPSSELHSVANEMQASTPALLPSLPTVLSFDES
DQNDGPHEGLLRLTQANTLLGQADMEEIEELLTDSLNEYVEVARGLCEGH
SDKTAIVEGLPQAISVYMHFEEVLPPAIDLVRWFCSAHMICLEKLACEMA
TATARWKTPATGRGCPNEENGDTAQKALRILRLLIAGFRTFLDGARSRLF
CSENHLKNLQHAVGYARETVRCIVEECSGPDPTVGKAVARLKGLLATSCF
IRLHNAAFDNRIPSGTQQLFNWGNKDVGKLLKCIAQEEKIPNIAYLQLEG
NCIEALGVLCSVAIAAPQVFAMIACGFADAIKCMNAASAGTWGRRPALQH
ITVRHTAIACAAHLADRLGKSPDGNRSDAARKLWTALSDCCIMQTGEYVC
DALPAPGSAGAQAMAEIRSHSGVRSSSPRAFSDLTIAVPNRGDDVSKPDV
SATEHRGWILGSVAEHTTSGNVATGNKRCRPAHSPREHPAGNNVADSRGA
NDQGVNGSTSPMNVKDENLTDNRGKSDPVDKSQLPPEPPRTMRHKRPRSL
DEGPTQNRSTHDKGSLPPVLSRTMQSDQPEWRDGGHYKVVLGESFKRPGN
HGSGGAVDESSNAGHCVHFKYDFIPGRTDVDATAMLTQRPLGGDEAENIA
RTGGTNEGLRWTAEMKYRSRHTENPGPVHFSGHASRAQDLECVLVFDGNM
FVMDRVSVAGVLKYVQDVSALCGNVNKSAENATRKKEKPKKTDDKEKKER
IKDATEKGEKKEKKKSTADKAGKNEKKNVVDDKATSGNQDKNNTRERKGP
GKSSKAAENESTSTAHPPANILVAPANMLSRPRNSSSDNSTGNNRPPLGA
TEPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019194Tscrpt_elong_fac_Eaf_N