mRNA_H-paniculata_contig1714.3983.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1714.3983.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE) HSP 1 Score: 181 bits (458), Expect = 1.030e-42 Identity = 139/410 (33.90%), Postives = 203/410 (49.51%), Query Frame = 3
Query: 234 PHEGLLRLTQANTLLGQAD-----MEEIEELLTDSLNEYVEVARGLC---EGHSDKTAIVEGLPQAISVYMHFEEVLPPAIDLVRWFCSAHMICLEKLACEMATATARWKTPATGRGCP----------------------NEENGDTAQKALRILRLLIAGFRTFLDGAR--SRLFCSENHLKNLQHAVGYARETVRCIVEECSGPDPTVGKAVARLKGLLATSCFIRLHNAAFDN------------RIPSG--TQQLFNWGNKDVGKLLKCIAQEEKIPNIAYLQLEGNCIEALGVL-----CSVAIAAPQVFAMIACGFADAIKCMNAASAG----TWGRRPALQHITVRHTAIACAAHLADRLGKS----PDGNRSDAARKLWTALSDCCIMQTGEYVCDALPAP 1286
PH+GL ++ QA +L+ A ++ +++LL S Y++ A L E ++D +AI +G PQA + + E V P AI LVRWFCS H+ L +++ M R + + +E +G A++A R+LR+LI+ F FL+ + S +F + H++ L AV AR+ + + ECS DP+VGKA ARL+GL A +CF + + A D ++P+ + L G KDV KLL CI+ E + AYL C+EA+G L VA AP +A IA FA A++CM + G W RRPAL VRHT AC HLA+ L + PD +R KL +AL C +M+ +V D P P
Sbjct: 45 PHQGLQQIEQARSLVEAAPGDGGGVDRVKKLLVQSKAAYLQAASALAAAGEENTDVSAISQGAPQAALICVASEAVFPKAIALVRWFCSKHVASLCEVSQAMEIEAKRLEKQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGSGTRAERATRLLRVLISSFNAFLEQSSPGSGMFSTAAHVRVLDIAVSLARKAIERLSRECSA-DPSVGKAAARLRGLTAAACFASV-SPALDGGGEADEKSQTKEQVPAAPNSDNLDRMGKKDVDKLLVCISGGEGKKDEAYLSPPCICVEAIGALRRQEKSVVATLAPPTYATIAEAFAAALRCMTRGAVGGPEGEWSRRPALNDANVRHTLFACCCHLAEGLPAATSPPPDDSRLRGHGKLVSALKACHVMRG--FVTDGHPLP 450
BLAST of mRNA_H-paniculata_contig1714.3983.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI) HSP 1 Score: 152 bits (383), Expect = 4.850e-34 Identity = 166/588 (28.23%), Postives = 225/588 (38.27%), Query Frame = 3
Query: 588 AQKALRILRLLIAGFRTFLDGAR--SRLFCSENHLKNLQHAVGYARETVRCIVEECSGPDPTVGKAVARLKGLLATSCFIRLHNAAFDN---------------------------RIPSGTQQLFNWGNKDVGKLLKCIAQEEKIPNIAYLQLEGNCIEALGVLCSVAIAAPQVFAMIACGFADAIKCMNAASAG----TWGRRPALQHITVRHTAIACAAHLADRLGKS----PDGNRSDAARKLWTALSDCCIMQTGEYVCDALPAP-----GSAGAQAMAEIRSHSGVRSSSPRAFSDLTIAVPNRGDDVSKPDVSATEHRGWILGSVAEHTTSGNVATGNKRCRPAHSPREHPAGNNVADSRGAN-DQGVNGSTSPMNVKDENLTDNRGKSDPVDKSQLPPEPPRTMRHKRPRS---LDEGPTQNRSTHDXXXXXXXXXXXXXXXXXEWRDGGHYKVVLGESFKRPG---------------------NHGSGGAVDES-SNAGHCVHFKYDFIPGRTDVDATAMLTQRPLGGDEAENIARTGGTNEGL-------RWTAEMKYRSRHTENPGPVHFSGHASR 2126
A++A+R+LR+L+ F FL + S +F + H++ L AV AR+ + + ECS DP+VGKA ARL+GL A +CF + + A D + L G KDV KLL C++ E + YL L CIEA+G L VA AP+ +A IA FA A++CM + G W RRPAL VRHT AC +LA+ L + PD +R KL +AL C +M+ +V D P P G+ AE + V S SA++ G S G + G +A G D +T P + + +G + + WR+G Y VVLG+SF G G G D SN G VH KYDF+PGRT++D A L QRPL +E R GT + RW AE++Y SR NP PV F+G A R
Sbjct: 191 AERAIRLLRVLLGSFNAFLQQSSLGSGMFSTSAHVRVLDIAVSLARKAIERLSRECSA-DPSVGKAAARLRGLTAAACFAPV-SPALDGGGEADXXXXXXXXXXXXXXXXXXXXXXXXAPNSDNLDRMGKKDVDKLLMCVSGGEAKKDEVYLSLPCICIEAIGALRRVATLAPRTYATIAEAFAAALRCMTRGAVGGPEGEWTRRPALNDANVRHTLFACCCNLAEGLPAAACPPPDDSRLRGRGKLVSALKACHVMRG--FVADGHPLPLATAQPGGGSGEAAETAAGVVVGGSGAAGIGSACAXXXXXXXXXXXTTGSASKTAGKPTPSAXXXXXXXXXXXGEEE------------GPTMAALFGEEEDNEPESATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAGIDVADGAMPSAAAAPATKSYPPLQTAPEKMPA-WREGERYGVVLGDSFYGSGXXXXXXXXXXXXXXXXXXXXXRRGLVGDDDTGESNPGQYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWKGRGSGTGGDVVGGGQQQRWAAEVEYESRDPSNPEPVRFTGDAVR 761 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1714.3983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1714.3983.1 >prot_H-paniculata_contig1714.3983.1 ID=prot_H-paniculata_contig1714.3983.1|Name=mRNA_H-paniculata_contig1714.3983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=855bp MDGSTNGVGINQVALPVQPSSELHSVANEMQASTPALLPSLPTVLSFDESback to top mRNA from alignment at H-paniculata_contig1714:1077..15864+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1714.3983.1 ID=mRNA_H-paniculata_contig1714.3983.1|Name=mRNA_H-paniculata_contig1714.3983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14788bp|location=Sequence derived from alignment at H-paniculata_contig1714:1077..15864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1714:1077..15864+ >mRNA_H-paniculata_contig1714.3983.1 ID=mRNA_H-paniculata_contig1714.3983.1|Name=mRNA_H-paniculata_contig1714.3983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5130bp|location=Sequence derived from alignment at H-paniculata_contig1714:1077..15864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |