mRNA_H-paniculata_contig17113.3975.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17113.3975.1
Unique NamemRNA_H-paniculata_contig17113.3975.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17113.3975.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.000e-20
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:   40 QVLESTNSASIGANTAVAPELKKGVRMLMHHTRDTDRKQWNETRVLAM 183
            QVLESTNSAS GANTAVAPELKKGVRMLMHHTRDTD+KQWNETRVLAM
Sbjct: 1447 QVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAM 1494
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BLAST of mRNA_H-paniculata_contig17113.3975.1 vs. uniprot
Match: A0A6H5KPX0_9PHAE (Mon2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.490e-20
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   40 QVLESTNSASIGANTAVAPELKKGVRMLMHHTRDTDRKQWNETRVLAM 183
            QVLESTNSAS GANTAVAPELKKGVRMLMHHTRDTD+KQWNETRVL M
Sbjct:  520 QVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLMM 567
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BLAST of mRNA_H-paniculata_contig17113.3975.1 vs. uniprot
Match: A0A835YQS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.390e-9
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   40 QVLESTNSASIGANTAVAPELKKGVRMLMHHTRDTDRKQWNETRVLAM 183
            +VL  T +AS   +T VAPEL+KGVR +MHH+RDTDRKQW+ET VLAM
Sbjct: 1226 EVLCCTRAAS--HDTGVAPELRKGVRAVMHHSRDTDRKQWSETSVLAM 1271
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BLAST of mRNA_H-paniculata_contig17113.3975.1 vs. uniprot
Match: A0A4V1SL55_9BACT (Mon2_C domain-containing protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4V1SL55_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 6.380e-6
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   85 AVAPELKKGVRMLMHHTRDTDRKQWNETRVLAM 183
            AVAPELK+G++M +HH+RDT  KQW+ETRVL +
Sbjct:  232 AVAPELKRGMKMAVHHSRDTAAKQWSETRVLIL 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17113.3975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LQH8_ECTSI2.000e-2095.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPX0_9PHAE9.490e-2093.75Mon2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YQS4_9STRA1.390e-966.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4V1SL55_9BACT6.380e-666.67Mon2_C domain-containing protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17113contigH-paniculata_contig17113:1566..1748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3e-17
Seed eggNOG ortholog2880.D8LQH8
KEGG koko:K18466
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein transport
EggNOG OGsKOG1848@1,KOG1848@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size183
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929352.0467803-UTR-H-paniculata_contig17113:1565..15891622929352.0467803-UTR-H-paniculata_contig17113:1565..1589Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17113 1566..1589 +
1691480826.5805495-UTR-H-paniculata_contig17113:1565..15891691480826.5805495-UTR-H-paniculata_contig17113:1565..1589Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17113 1566..1589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929352.0588293-CDS-H-paniculata_contig17113:1589..17481622929352.0588293-CDS-H-paniculata_contig17113:1589..1748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17113 1590..1748 +
1691480826.5900366-CDS-H-paniculata_contig17113:1589..17481691480826.5900366-CDS-H-paniculata_contig17113:1589..1748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17113 1590..1748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17113.3975.1prot_H-paniculata_contig17113.3975.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17113 1590..1748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17113.3975.1

>prot_H-paniculata_contig17113.3975.1 ID=prot_H-paniculata_contig17113.3975.1|Name=mRNA_H-paniculata_contig17113.3975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MLQMLQVLESTNSASIGANTAVAPELKKGVRMLMHHTRDTDRKQWNETRV
LAM
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mRNA from alignment at H-paniculata_contig17113:1566..1748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17113.3975.1 ID=mRNA_H-paniculata_contig17113.3975.1|Name=mRNA_H-paniculata_contig17113.3975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig17113:1566..1748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCTCTTTTTGCTTGTATCGAATATGCTGCAAATGCTACAGGTGCTAGA
GAGCACGAACAGCGCAAGCATAGGCGCTAACACGGCTGTGGCGCCCGAGC
TCAAGAAGGGCGTGAGGATGTTGATGCACCACACGAGAGACACGGACAGG
AAACAATGGAATGAGACAAGGGTACTCGCCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig17113:1566..1748+

>mRNA_H-paniculata_contig17113.3975.1 ID=mRNA_H-paniculata_contig17113.3975.1|Name=mRNA_H-paniculata_contig17113.3975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig17113:1566..1748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCAAATGCTACAGGTGCTAGAGAGCACGAACAGCGCAAGCATAGG
CGCTAACACGGCTGTGGCGCCCGAGCTCAAGAAGGGCGTGAGGATGTTGA
TGCACCACACGAGAGACACGGACAGGAAACAATGGAATGAGACAAGGGTA
CTCGCCATGATGCTGCAAATGCTACAGGTGCTAGAGAGCACGAACAGCGC
AAGCATAGGCGCTAACACGGCTGTGGCGCCCGAGCTCAAGAAGGGCGTGA
GGATGTTGATGCACCACACGAGAGACACGGACAGGAAACAATGGAATGAG
ACAAGGGTACTCGCCATG
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