mRNA_H-paniculata_contig17113.3974.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17113.3974.1
Unique NamemRNA_H-paniculata_contig17113.3974.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17113.3974.1 vs. uniprot
Match: A0A6H5KPX0_9PHAE (Mon2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.090e-14
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 PQLRNCAVNTLFSAAVGNGGSLTEEEWKQFLLDVTFPLIEKVSSSS 138
            P+LRNCAVNTLFSAAVGNG  L+E +WKQFL +VTFPLIE+V  S+
Sbjct:  480 PELRNCAVNTLFSAAVGNGDGLSESDWKQFLQEVTFPLIEQVLEST 525
[Close]
BLAST of mRNA_H-paniculata_contig17113.3974.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.090e-14
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 PQLRNCAVNTLFSAAVGNGGSLTEEEWKQFLLDVTFPLIEKVSSSS 138
            P+LRNCAVNTLFSAAVGNG  L+E +WKQFL +VTFPLIE+V  S+
Sbjct: 1407 PELRNCAVNTLFSAAVGNGDGLSESDWKQFLQEVTFPLIEQVLEST 1452
[Close]
BLAST of mRNA_H-paniculata_contig17113.3974.1 vs. uniprot
Match: A0A835YQS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.010e-11
Identity = 24/42 (57.14%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 PQLRNCAVNTLFSAAVGNGGSLTEEEWKQFLLDVTFPLIEKV 126
            P++RNCA+NTLFSA +GNG + ++++W+Q+LL+VTFPL+ +V
Sbjct: 1186 PEVRNCAINTLFSALIGNGSTFSDQQWQQYLLEVTFPLLGEV 1227
[Close]
BLAST of mRNA_H-paniculata_contig17113.3974.1 vs. uniprot
Match: A0A6G0X7J0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7J0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.410e-5
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 PQLRNCAVNTLFSAAVGNGGSLTEEEWKQFLLDVTFPLIEKVSS 132
            P++RNCA+NTLF  AV +G +   EEW  FL     PL E+++S
Sbjct:  987 PEVRNCAINTLFGTAVTHGANFRLEEWTTFLQGTVLPLAEELAS 1030
[Close]
BLAST of mRNA_H-paniculata_contig17113.3974.1 vs. uniprot
Match: A0A1V9Z8H9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z8H9_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 9.250e-5
Identity = 22/47 (46.81%), Postives = 28/47 (59.57%), Query Frame = 1 
Query:    1 PQLRNCAVNTLFSAAVGNGGSLTEEEWKQFLLDVTFPLIEKVSSSST 141
            P++RNCA+NTLF  AV +G      EWK F+ D   PL  K+S   T
Sbjct: 1018 PEVRNCAINTLFGMAVTHGSQFGLVEWKLFIEDTVLPLGTKLSVQVT 1064
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17113.3974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPX0_9PHAE2.090e-1473.91Mon2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LQH8_ECTSI2.090e-1473.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQS4_9STRA7.010e-1157.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0X7J0_9STRA1.410e-547.73Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9Z8H9_9STRA9.250e-546.81Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17113contigH-paniculata_contig17113:254..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D8LQH8
KEGG koko:K18466
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein transport
EggNOG OGsKOG1848@1,KOG1848@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929351.97092-CDS-H-paniculata_contig17113:253..4031622929351.97092-CDS-H-paniculata_contig17113:253..403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17113 254..403 +
1691480826.5652864-CDS-H-paniculata_contig17113:253..4031691480826.5652864-CDS-H-paniculata_contig17113:253..403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17113 254..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17113.3974.1prot_H-paniculata_contig17113.3974.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17113 254..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17113.3974.1

>prot_H-paniculata_contig17113.3974.1 ID=prot_H-paniculata_contig17113.3974.1|Name=mRNA_H-paniculata_contig17113.3974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
PQLRNCAVNTLFSAAVGNGGSLTEEEWKQFLLDVTFPLIEKVSSSSTVLS
back to top

mRNA from alignment at H-paniculata_contig17113:254..403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17113.3974.1 ID=mRNA_H-paniculata_contig17113.3974.1|Name=mRNA_H-paniculata_contig17113.3974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig17113:254..403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCAGCTGCGCAACTGTGCGGTGAATACTTTATTTTCGGCGGCAGTGGG
CAACGGCGGCAGCTTGACGGAGGAAGAGTGGAAGCAGTTCTTGCTCGATG
TGACCTTTCCCCTCATAGAAAAGGTGAGCTCTAGCTCTACTGTACTGTCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17113:254..403+

>mRNA_H-paniculata_contig17113.3974.1 ID=mRNA_H-paniculata_contig17113.3974.1|Name=mRNA_H-paniculata_contig17113.3974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig17113:254..403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCAGCTGCGCAACTGTGCGGTGAATACTTTATTTTCGGCGGCAGTGGG
CAACGGCGGCAGCTTGACGGAGGAAGAGTGGAAGCAGTTCTTGCTCGATG
TGACCTTTCCCCTCATAGAAAAGGTGAGCTCTAGCTCTACTGTACTGTCG
CCTCAGCTGCGCAACTGTGCGGTGAATACTTTATTTTCGGCGGCAGTGGG
CAACGGCGGCAGCTTGACGGAGGAAGAGTGGAAGCAGTTCTTGCTCGATG
TGACCTTTCCCCTCATAGAAAAGGTGAGCTCTAGCTCTACTGTACTGTCG
back to top