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Homology
BLAST of mRNA_H-paniculata_contig17100.3971.1 vs. uniprot
Match: A0A6H5JRR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR5_9PHAE) HSP 1 Score: 271 bits (694), Expect = 7.520e-85 Identity = 133/214 (62.15%), Postives = 166/214 (77.57%), Query Frame = 1
Query: 40 LQRGAVPISLSYSFSVEHDYITENWGVLNDLVLVDDDELYVTQYFPARFGIHGPTDSSEWFSSIRLNFYLALMLLRVSFAPIIRCTGIRGEGINCERLAQGRGIMYNGIAVSPDKERVIVSDTMAMQMTIFNRSVDTGALTVHQRLDVPGSPDNVEIDLYRAAKGVEAYTVGLVHMWDFFAFQAKMKGAKDVAEGDDALCAGGITSIIRDKDTG 681
L +G PI+L+YSFSVEH+ IT N+GVLNDLVLVDDDELYVTQ+ R +HGPT +RL + L++L++S APIIRCTGIRG I+CERLA+GRG MYNGIA+SP+ ER++VSDT+AMQM IFNRSV+TGAL + QRLD+PGSPDNVEIDL+RA +G+EAYTVGL+ DF + A M GA D +GDD AGG SI+ D+++G
Sbjct: 287 LAKGQTPITLTYSFSVEHELITTNFGVLNDLVLVDDDELYVTQFLAMRHPLHGPTQPDGVLEHLRLYGSILLLMLQISPAPIIRCTGIRGADIDCERLAKGRGAMYNGIAISPNGERLLVSDTVAMQMLIFNRSVETGALRLRQRLDLPGSPDNVEIDLFRATEGIEAYTVGLIRATDFAKYSAAMVGATDPTDGDDIKMAGGFASIVFDQESG 500
BLAST of mRNA_H-paniculata_contig17100.3971.1 vs. uniprot
Match: D8LTG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG8_ECTSI) HSP 1 Score: 271 bits (692), Expect = 4.770e-84 Identity = 133/213 (62.44%), Postives = 166/213 (77.93%), Query Frame = 1
Query: 46 RGAVPISLSYSFSVEHDYITENWGVLNDLVLVDDDELYVTQYFPARFGIHGPTDSSEWFSSIRLNFYLALMLLRVSFAPIIRCTGIRGEGINCERLAQGRGIMYNGIAVSPDKERVIVSDTMAMQMTIFNRSVDTGALTVHQRLDVPGSPDNVEIDLYRAAKGVEAYTVGLVHMWDFFAFQAKMKGAKDVAEGDDALCAGGITSIIRDKDTGE 684
+G PI+L+YSFSVEH+ IT N+GVLNDLVLVDDDELYVTQ+ R +HGPT +RL + L++L++S APIIRCTGIRG I+CERLA+GRG MYNGIA++P+ ER++VSDT AMQM IFNRSV+TGAL + QRLD+PGSPDN+EIDLYRAA+GVEAYTVGL+ DF + A M GA D +GDD AGG SI+ D+++G+
Sbjct: 336 KGQTPITLTYSFSVEHELITTNYGVLNDLVLVDDDELYVTQFMAMRHPLHGPTQPDGVLEHLRLYGSMLLLMLQISPAPIIRCTGIRGADIDCERLAKGRGAMYNGIALNPNGERLLVSDTAAMQMLIFNRSVETGALRLRQRLDLPGSPDNLEIDLYRAAEGVEAYTVGLIRATDFAKYSAAMGGATDPTDGDDIKMAGGFASIVFDQESGK 548
BLAST of mRNA_H-paniculata_contig17100.3971.1 vs. uniprot
Match: A0CX94_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CX94_PARTE) HSP 1 Score: 54.7 bits (130), Expect = 3.550e-5 Identity = 49/188 (26.06%), Postives = 89/188 (47.34%), Query Frame = 1
Query: 61 ISLSYSFSVEHDYITENWGVLNDLVLVDDDELYVTQYFPARFGIHGPTDSSEWFSSIRLNFYLALMLLRVSFAPIIRCTGIRGEGI----NCERLAQG--RGIMYNGIAVSPDKERVIVSDTMAMQMTIFNRSVDTGALTVHQRLDVPGSPDNVEIDLYRAAKGVEAYTVGLV-HMWDFFAFQAKMKG 603
++L Y S+ D + G+LNDL+L++D+ +T+Y P P + + + L + L + + + I+ C + EG NC+ L G++ NGI K RV DT+A Q+ + + L + +D+ S DN+E D+ R + +GL+ + ++F+ A +KG
Sbjct: 149 LNLEYRHSIIMD--DKYNGILNDLILIEDNRFLITKYMPYT----DPKEGRHQITPLHLLKTVFLWVSQQRTSYIVDCK-FQKEGTIIKPNCKELLDAPLTGVVLNGITWDR-KNRVWAGDTIAKQLNEYE--ITPSGLVFKRFIDIENSIDNLEYDVDR-----NSLILGLIPKLHNYFSLDAFLKG 321
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 63.9 |
| Seed ortholog evalue | 1.1e-07 |
| Seed eggNOG ortholog | 5911.EAS04630 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2E92B@1,2SFGC@2759,3ZE2G@5878 |
| Ec32 ortholog description | Six-bladed beta-propeller, TolB-like |
| Ec32 ortholog | Ec-02_005570.1 |
| Best tax level | Ciliophora |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 684 |
| Cds size | 684 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17100.3971.1 >prot_H-paniculata_contig17100.3971.1 ID=prot_H-paniculata_contig17100.3971.1|Name=mRNA_H-paniculata_contig17100.3971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
QAEAARTAARKKGLQRGAVPISLSYSFSVEHDYITENWGVLNDLVLVDDD ELYVTQYFPARFGIHGPTDSSEWFSSIRLNFYLALMLLRVSFAPIIRCTG IRGEGINCERLAQGRGIMYNGIAVSPDKERVIVSDTMAMQMTIFNRSVDT GALTVHQRLDVPGSPDNVEIDLYRAAKGVEAYTVGLVHMWDFFAFQAKMK GAKDVAEGDDALCAGGITSIIRDKDTGE back to topmRNA from alignment at H-paniculata_contig17100:574..4995+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig17100.3971.1 ID=mRNA_H-paniculata_contig17100.3971.1|Name=mRNA_H-paniculata_contig17100.3971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4422bp|location=Sequence derived from alignment at H-paniculata_contig17100:574..4995+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGGCCGAAGCTGCGAGAACGGCGGCGCGTAAGAAGGGACTCCAAAGAGG
AGCCGTGCCCATTAGTCTTTCGTACTCTTTCTCCGTGGAGCATGACTATA
TCACGGAAAACTGGGGGGTCCTGAACGACCTGGTATTGGTGGACGATGAC
GAACTGTACGTGACACAGGTGGGAAAAAAACATAAATCGTGCCCGCTTTT
TCTGTCATCGTCCATTATTTTGGGGTAGACATGGTATACTGTATTCTAGT
AATATTAATAGATGAACACTGATCGAATCGCCCTGAGCTTACAACGTGTG
GGTCACATCTTCGTGCAGTATTGCCGGTAGATTTGACAGCATTGTATTCG
CATATGAGATATGTCATTATCCAATCTTTTCGTACGTTGTGTTTTATCGG
GTTTGGGATTGTCACGTTCTGGTAGCGTTTTGTATCATATCGTATCGTAT
CGTATCGTATCCTATCGTATTGTATTGTATGGACCTGTTTGTTTTTAGGT
AGTCGGTTATTTATGGACTTGTAAGCATTGTAAAGTTGTTTTCTTGTTTT
TACCTTGATATTGCCGTTGCTGCTTGTGTTGCTGATGCTGCTGGTTGTGA
TGCTAATGGTGCTTGTGGGAGAGGTTTGTATCATGATAGTTTCTACACAA
GAAGAATTTTTCAATCGTGAAGCTGTTGGAGTGCGAACGGCCTCGTGTTG
GTTCGTCTCCACCTGTGCTAGAGCTATAACCCTACCCCTCCGATTGAAAT
TAAACGTGAAAAATTAAGTCGTCACAAAAGTCACCGTAAAATGTTCAAAC
GTAGCTTTTTGGGGACAGGGGAAACATATGTCCTTGTCTCGATTATGCAA
CCCGGAACTCTTGAACTCTTGTCTCTTGAGAGGAATAGTTCCAGTTGAGT
AGTCCGTTAGTCCAGAGTATGGCACCAAAAGAGGCTGTCATACTATCGTC
TGTAATTCTCATCGAGGTATACGAAACTGGTACACTCACTTACACTGATT
GATCAGTGTTCGCAGATGTCAACATACAAACTCCTTGCGCGCCAAAACTA
CAGACATACAGTGAGTTGTTCTTGTTGTGTTACGTATGTGTAACCCTTCC
TTCCCTCCCCACCCCTCTTCAGTTGTCCTTGACACCGATGCCCTGTGTTG
ACGAAACATGTCCTCTACTCTTGAACTTCCGCGTGATATGTCCGTGCACC
CTTCCTTACACCGTTTCTGGGATTGTCTTTTGCACCTTCCCTGGGACCGG
TTCTGGGTTTTCTGGAATGAACAGTACTTTCCGGCACGTTTCGGCATTCA
TGGTCCTACCGACTCATCGGAGTGGTTTTCATCTATTAGGCTCAACTTCT
ACCTGGCGCTGATGCTGTTACGCGTGAGCTTTGCTCCAATCATACGCTGC
ACAGGTAGCTAGTGTGTATCAAGCAAGCATTAGGGTGTTGAGTTTTGTAT
GTCGTGATGTGTGATCTGTCACGTAGTGTAATGTCATGTCATGTCATGTC
ATTTGAAGAAACAGGAAGACAGCAACGCAGGAAGGCGTGAAATTGTATTT
GAATAGGCATTATTTTCAATGTACTTGGATGTACCTACAAGCAGCATCGC
TTTCGAAAACCTCATATAGGAATCCGATCTCGGAAGGCTCCGAAACAGAA
CACCGAAATTGGCGATGAGGGATTGAGGAGTCACAATCGAGAAAAAGTAT
GGAAGAGTCCCCAGTAAGGTGAGCGGTGAGGCAAAGAGCCCTAAGACCGT
CTCTATATTTACATATTAACATGGATATTGACAGGCATCCGTGGAGAAGG
CATCAACTGCGAGCGTCTGGCTCAGGGGCGAGGCATCATGTACAACGGAA
TCGCGGTAAGTAAATCAAAGCCTGCACACATCCTCTGTCTATATAGTGGT
GGATAGAAGAAGAATTCTCATTAACCTCGTTCAGTTTTGATACGATTTGC
CGTGGGATAGCACAGCATAGCATAGAATCAAGCTCTCTCGCTCTCTCTCT
CTGCCTCTTCCTACTATCGTACGGTACGTTGGGTGCACTCTTTGGTGATG
TGCTAGCGTGCTGATTGTCTCTTTTAGTGTCGTTGTAGACTAGTGAAACT
TGACCGGGTGAGGGTTGGTGACTGGGCGGTGCTGAATAGACCTTTCTTAC
AATTTCTTTTCTCTCTTTTGGCTTGCTGATATGATATGATATGATATGAT
ATGCATACGAACAATCGGGCAGAATAGGGGGAACTAGAAAAGCCGTCGAA
AATGATTAAGTACGGTACATGCCACGCCTCGGTATGGGATCCGATAAAAA
TGGTGGCATTTTCTTTGTGCTGGGATCCGATAAAATGTGAGTTACAACCT
TCAACCTTGCTGACCAATCAAGTTTCCTGTGGCAACATTTTTCACTCTAT
TGATTGTACTGTGCTCCGGTAACAGGTGAGCCCGGACAAAGAGCGGGTGA
TCGTGTCTGACACCATGGCGATGCAGATGACAATCTTCAATCGCTCCGTT
GATACTGGAGCGCTAACGGTTCACCAGCGCCTGGACGTACCCGGCTCTCC
GGACAATGTAGAAATAGATCTTTACAGAGGTGCGGATTTAGTACAGTTAG
GCCTGGTACAGACGTGGGTGTTTTACCTCCTTGTCTTTCTCTTTTTTCTC
ACCCTTGCTCTTTTTTTCCGACTAAAACGCTGAATTTTGTTCGGGAAAAT
CGGAAGGTGTTTGAACTAGGATATTGGAACACCATATATAAAAAAAAAAA
TCATGAGCTCACTTTCGAAATTCCGTAAAATTGGAGAAGAAAATGAAGAA
GTAGTCTAGTAAAAACGAGAAAATACCAGAAAAAAAAAAGGAGAAAAAAC
TGGCGGGGTAACGGCAATCCTTGTACGGACGGTTGCTTGTTTTTGGCTCG
TTCGTTCGTTCCAGTTTGCATCCTCGTCCTGTCGTTGTCGACAGAAACGA
AATGGCCGTCTTATCAGTTGCCACTTGGGAATATATTTTTAACCCCCCGG
ACAAATACGAATACAAGACACCAGTAAATACGAGAAGTCTGAGATGAATA
CTATATCTGATTGAGTTGGGGAGGATGTCCATGTGGCGCGAATAATATGT
AGTGCACTCGATATGCCATGGAGGCATCGTAAACCTCGGGCAGGTAGAGC
ATTCAATCTGTACAGTACCATCCAACAAATAAGCACGACCTGCATCTGCG
ACTGTTCGCCGGGTATACGACCACCTGCTGACCATCTGTAGAGTAACTTT
TCGTATACTTGTAAAGGAATAAATACGTGTTGGGTTGGTACGGTTGGATC
ATATAGTTTCTCCTGTAGTGCGTGCGCGTTTTGCGTAAGTAGCAAAAGAG
TCGCAGCAGCTATGTCATGCTATGCTAAGCTACTCTACGCTATGATGATA
TGCGTGAGTCATCCTACGGTATGAGGGGGGTCGTTTGTGTGACGAAGGCT
GCTTCGCAAAAGCGGTGCAGAAATAACGCGAATCAAAACTATGTCGATTA
CTTATGTTTATATGTTTATGCATCCCTAAAGGTGCATAGTCCACGAGTTG
AAATGAGACTTCTGTTTAGGGGAGGGCAACAAATACGAAAAAGAAAAAAA
TACGTATGCCCGATCCTCTTCTCGAAGCGGCTCCTCCGTTGAACAAAGCG
GTTCAACTATCCCCCCTCCCCCCCCTCCATATGGTAGGGTGACTCGCCTG
TACAGTTCGTGCTCTGTAATTCACCGACGCACAGCAGCGCAGCGTATCGC
TGCACTCGATAGCACTGGCTCGTTGCTTGTTCGCGCGAAGATTTTGTGAG
TTGTTTGTGAAACGACGACGACGACCTCATTTAGATACTAAAAATGATTT
GGAATTACTTTTGGGGATGAATATATGATTTTTGTCATCGATTCGAAAAC
AAATATCGCTCATCAAAAATCGCTATCAAAATTTGACCAACACGACCCCA
GCTGTAAATGACAGCTCACGATCAGGGACACGCTTACTTGTAGGTATAGG
GACGAAATGCTTTGCGCTGCGCAAGGAGCATGATTGACGGCACTAACCGC
CCTCGTGCCTTGTATTTTTTCCTCTCTCCTTTCTCCTCTCTCTCTCTCTG
CCTCTCTCTCTCTGCCTCTCTCTTTCTGCCTCTCTCTCTCTGCATCTCTC
TTGTCAATATTCGATATCATGGTATTACATCGGTCTGTTGTTTAATTGTG
CTCGTTGTCCTTTGCGTTTCCTTGTGCTGTTGACTCACTCCACGTCTGTT
CGTGGCTCCAGCTGCGAAGGGGGTGGAAGCGTACACGGTGGGTCTAGTTC
ACATGTGGGACTTCTTTGCCTTCCAAGCAAAGATGAAAGGTGCCAAGGAT
GTCGCGGAAGGAGATGACGCGCTGTGTGCGGGTGGGATCACAAGCATTAT
CCGCGATAAGGACACTGGTGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig17100:574..4995+ >mRNA_H-paniculata_contig17100.3971.1 ID=mRNA_H-paniculata_contig17100.3971.1|Name=mRNA_H-paniculata_contig17100.3971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig17100:574..4995+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGGCCGAAGCTGCGAGAACGGCGGCGCGTAAGAAGGGACTCCAAAGAGG AGCCGTGCCCATTAGTCTTTCGTACTCTTTCTCCGTGGAGCATGACTATA TCACGGAAAACTGGGGGGTCCTGAACGACCTGGTATTGGTGGACGATGAC GAACTGTACGTGACACAGCAGGCCGAAGCTGCGAGAACGGCGGCGCGTAA GAAGGGACTCCAAAGAGGAGCCGTGCCCATTAGTCTTTCGTACTCTTTCT CCGTGGAGCATGACTATATCACGGAAAACTGGGGGGTCCTGAACGACCTG GTATTGGTGGACGATGACGAACTGTACGTGACACAGTACTTTCCGGCACG TTTCGGCATTCATGGTCCTACCGACTCATCGGAGTGGTTTTCATCTATTA GGCTCAACTTCTACCTGGCGCTGATGCTGTTACGCGTGAGCTTTGCTCCA ATCATACGCTGCACAGTACTTTCCGGCACGTTTCGGCATTCATGGTCCTA CCGACTCATCGGAGTGGTTTTCATCTATTAGGCTCAACTTCTACCTGGCG CTGATGCTGTTACGCGTGAGCTTTGCTCCAATCATACGCTGCACAGGCAT CCGTGGAGAAGGCATCAACTGCGAGCGTCTGGCTCAGGGGCGAGGCATCA TGTACAACGGAATCGCGGCATCCGTGGAGAAGGCATCAACTGCGAGCGTC TGGCTCAGGGGCGAGGCATCATGTACAACGGAATCGCGGTGAGCCCGGAC AAAGAGCGGGTGATCGTGTCTGACACCATGGCGATGCAGATGACAATCTT CAATCGCTCCGTTGATACTGGAGCGCTAACGGTTCACCAGCGCCTGGACG TACCCGGCTCTCCGGACAATGTAGAAATAGATCTTTACAGAGGTGAGCCC GGACAAAGAGCGGGTGATCGTGTCTGACACCATGGCGATGCAGATGACAA TCTTCAATCGCTCCGTTGATACTGGAGCGCTAACGGTTCACCAGCGCCTG GACGTACCCGGCTCTCCGGACAATGTAGAAATAGATCTTTACAGAGCTGC GAAGGGGGTGGAAGCGTACACGGTGGGTCTAGTTCACATGTGGGACTTCT TTGCCTTCCAAGCAAAGATGAAAGGTGCCAAGGATGTCGCGGAAGGAGAT GACGCGCTGTGTGCGGGTGGGATCACAAGCATTATCCGCGATAAGGACAC TGGTGAGCTGCGAAGGGGGTGGAAGCGTACACGGTGGGTCTAGTTCACAT GTGGGACTTCTTTGCCTTCCAAGCAAAGATGAAAGGTGCCAAGGATGTCG CGGAAGGAGATGACGCGCTGTGTGCGGGTGGGATCACAAGCATTATCCGC GATAAGGACACTGGTGAG back to top
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