mRNA_H-paniculata_contig171.3967.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig171.3967.1
Unique NamemRNA_H-paniculata_contig171.3967.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig171.3967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig171contigH-paniculata_contig171:37646..38355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size712
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929350.1677012-UTR-H-paniculata_contig171:37645..379051622929350.1677012-UTR-H-paniculata_contig171:37645..37905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig171 37646..37905 +
1691480825.8618364-UTR-H-paniculata_contig171:37645..379051691480825.8618364-UTR-H-paniculata_contig171:37645..37905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig171 37646..37905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929350.1895866-CDS-H-paniculata_contig171:37905..383551622929350.1895866-CDS-H-paniculata_contig171:37905..38355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig171 37906..38355 +
1691480825.869858-CDS-H-paniculata_contig171:37905..383551691480825.869858-CDS-H-paniculata_contig171:37905..38355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig171 37906..38355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig171.3967.1prot_H-paniculata_contig171.3967.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig171 37906..38355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig171.3967.1

>prot_H-paniculata_contig171.3967.1 ID=prot_H-paniculata_contig171.3967.1|Name=mRNA_H-paniculata_contig171.3967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MTPITMSLSYMCSRNRSTKCVYASFACSLSERCCFRRCWQLNPSPTHSPT
HPPTPSNPTQPLVSLGLSARSLLSIPVGFLSRSITGKQAPEKLTHQPTAS
LTVLAVLVALVVKRGLAGERQEDNSAYTPEAEWICRSMRQLRRHCRRRGG
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mRNA from alignment at H-paniculata_contig171:37646..38355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig171.3967.1 ID=mRNA_H-paniculata_contig171.3967.1|Name=mRNA_H-paniculata_contig171.3967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=710bp|location=Sequence derived from alignment at H-paniculata_contig171:37646..38355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCATCGAGCTTCATCTTGAATTTCTCACAGAAATCCATATTTTCGTA
GCAGTTTGAGTACAGAAGCTCTGACTTCAAAATTCCTTCTTTCGTCGATA
GCTTTTCTTGTTTGTCTCGCCACGTTTAATTCATTCTTCATCGGTACCTG
ATCAAAAGACGGATAATACGGAAAAACCCGCGTCGATTCATTTCTTGGTG
GTTTCTTGAGATATCGCCTCGGACGTTACACTACTACTCTCACGTGAAAA
ATTTGAAACGATGACCCCGATCACTATGTCGTTGAGTTATATGTGCAGCC
GTAATCGTTCAACAAAATGCGTGTACGCATCTTTTGCGTGTTCTCTATCG
GAACGTTGTTGCTTTCGCCGATGTTGGCAACTCAATCCATCACCCACCCA
CTCACCCACCCACCCACCCACCCCATCCAACCCTACCCAACCCCTAGTTT
CCCTCGGCCTTTCTGCACGTTCACTGTTGAGTATTCCTGTCGGCTTCTTG
TCCCGCTCCATCACAGGAAAGCAAGCACCGGAGAAACTCACACACCAGCC
AACGGCAAGTCTGACAGTGTTAGCGGTGCTGGTGGCACTGGTGGTAAAAC
GGGGTCTAGCAGGGGAAAGGCAAGAAGATAATAGCGCCTATACGCCGGAA
GCCGAATGGATCTGTCGCTCTATGCGACAGCTCAGGAGACATTGTAGACG
ACGAGGAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig171:37646..38355+

>mRNA_H-paniculata_contig171.3967.1 ID=mRNA_H-paniculata_contig171.3967.1|Name=mRNA_H-paniculata_contig171.3967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig171:37646..38355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCCGATCACTATGTCGTTGAGTTATATGTGCAGCCGTAATCGTTC
AACAAAATGCGTGTACGCATCTTTTGCGTGTTCTCTATCGGAACGTTGTT
GCTTTCGCCGATGTTGGCAACTCAATCCATCACCCACCCACTCACCCACC
CACCCACCCACCCCATCCAACCCTACCCAACCCCTAGTTTCCCTCGGCCT
TTCTGCACGTTCACTGTTGAGTATTCCTGTCGGCTTCTTGTCCCGCTCCA
TCACAGGAAAGCAAGCACCGGAGAAACTCACACACCAGCCAACGGCAAGT
CTGACAGTGTTAGCGGTGCTGGTGGCACTGGTGGTAAAACGGGGTCTAGC
AGGGGAAAGGCAAGAAGATAATAGCGCCTATACGCCGGAAGCCGAATGGA
TCTGTCGCTCTATGCGACAGCTCAGGAGACATTGTAGACGACGAGGAGGA
ATGACCCCGATCACTATGTCGTTGAGTTATATGTGCAGCCGTAATCGTTC
AACAAAATGCGTGTACGCATCTTTTGCGTGTTCTCTATCGGAACGTTGTT
GCTTTCGCCGATGTTGGCAACTCAATCCATCACCCACCCACTCACCCACC
CACCCACCCACCCCATCCAACCCTACCCAACCCCTAGTTTCCCTCGGCCT
TTCTGCACGTTCACTGTTGAGTATTCCTGTCGGCTTCTTGTCCCGCTCCA
TCACAGGAAAGCAAGCACCGGAGAAACTCACACACCAGCCAACGGCAAGT
CTGACAGTGTTAGCGGTGCTGGTGGCACTGGTGGTAAAACGGGGTCTAGC
AGGGGAAAGGCAAGAAGATAATAGCGCCTATACGCCGGAAGCCGAATGGA
TCTGTCGCTCTATGCGACAGCTCAGGAGACATTGTAGACGACGAGGAGGA
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