prot_H-paniculata_contig1709.3962.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1709.3962.1
Unique Name	prot_H-paniculata_contig1709.3962.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	150

Homology

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: D7FT81_ECTSI (RPOL4c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT81_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 2.110e-76
Identity = 117/151 (77.48%), Postives = 140/151 (92.72%), Query Frame = 0

Query:    1 MQGADDEENANTLKFGDEF--ENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSATTELREALQQFETYHDGEVLKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRLYS 149
            M+G DDEENAN L+FG E   +++SCLSNAEVSVVLEKQ+  YE+KDINVTPAF+KTM+YVKRFGGLGG+ +++AT+ELREALQQFET+H+GE ++LHQFE+MQ+ANLMQADSEVEEVLALIPSLG +LTEED+EN+LAIVRKHQHSRLYS
Sbjct:    1 MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A835YSR6_9STRA (HRDC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR6_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.230e-29
Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 0

Query:    8 ENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSATTELREALQQFETYHDGEVLKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSR 146
            EN NTLKFG  FE + CL++ EV  +L  +       D+  T A+ KT+ +VKRFG    + + + TTELR+AL+ FE   D     LH +E++ L NLMQADS V+E +ALIPSL +K  EEDIE +L I+RK   +R
Sbjct:   10 ENVNTLKFGPGFEEIQCLTHTEVYQILTSKTH-----DVQRTQAYTKTIEHVKRFG-TADDEKHAITTELRQALETFERDTDQGTETLHSYEIVSLCNLMQADSTVDEAIALIPSLSRKFKEEDIEALLDIIRKANAAR 142

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: H3GHD4_PHYRM (RPOL4c domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=H3GHD4_PHYRM)

HSP 1 Score: 105 bits (261), Expect = 6.140e-26
Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 0

Query:    6 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQ--FETYHDGEVL--KLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 141
            D E+A  L  GD+F N +CLSNAEV+V+LEKQK  YE ++  +T  F KT +YV+RF G     A  ++ TELREAL    F+   +GE +  +L +FE+  L+NL     EVEE +ALIPSL ++  E++IE +L IV +
Sbjct:   10 DTEDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIVSR 148

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A3M6VV57_9STRA (RPOL4c domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VV57_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.740e-25
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 0

Query:    6 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQ--FETYHDGEVL--KLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 141
            D E+A  L  G +F N +CLSNAEV+V+LEKQK  YE ++  +T  F KT +YV+RF G     A  ++ TELREAL    F+   DGE +  +L +FE+  L+NL     EVEE +ALIPSL ++  E++IE +L IV +
Sbjct:   10 DTEDAAELNLGGDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLQKRFAEDEIEEILGIVSR 148

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A8K1FR52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR52_PYTOL)

HSP 1 Score: 103 bits (257), Expect = 2.460e-25
Identity = 64/141 (45.39%), Postives = 91/141 (64.54%), Query Frame = 0

Query:    6 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSAT-TELREALQQ--FETYHDGEV--LKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 141
            D E+A  L  GD+F + +CLSNAEV+V+LEKQK  YE ++  +T  F KT +YV+RF G        A+ TELREAL    F+   DG+V  ++L +FE+  L+NL     EVEE +AL+PSL ++  E++IE +L IV +
Sbjct:   10 DTEDAAELNLGDDFRHETCLSNAEVAVILEKQKSDYENQEKQLTGVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLAFQREEDGQVTEVRLEEFEIACLSNLNP--EEVEESVALVPSLQKRFAEDEIEEILGIVSR 148

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A8J5JCD5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCD5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.100e-25
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 0

Query:   13 LKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQFETYHDGEVLKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 141
            L  GD+FEN +CLSNAEV+++L+KQK  Y ++    T  F KT +YV RF G     A  +A  ELR+ALQ     HD EV +L +FE+  L+NL     EVEE +ALIPSL +  T+ +IE +L+++ +
Sbjct:    9 LNLGDDFENDTCLSNAEVAIILDKQKVNYIEQKKMFTSMFKKTQSYVTRFTGTKDPVANQAAVIELRDALQSLSFEHDDEVHQLEEFEIASLSNLYP--EEVEEAVALIPSLPKHFTDHEIEEMLSLISR 136

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A024TL56_9STRA (RPOL4c domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL56_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.630e-24
Identity = 66/156 (42.31%), Postives = 95/156 (60.90%), Query Frame = 0

Query:    2 QGADDEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQFETYHDGE-------VLKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRLYS 149
            Q A D E+A  L  G++F+  +CLSNAEV+V+LEKQK  YE  +  +T  F KT +YV+RF G     A  ++ TELREAL  +E   +          ++L +FE+  L+NL     E EE +ALIPSL +K TEEDI+ +L I+ +   +R+Y+
Sbjct:    9 QHAMDTEDAAELNLGEDFQQETCLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTKDPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNLNP--EEPEEAMALIPSLNKKFTEEDIDEILQIIARTT-ARMYA 161

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A3F2S3S1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.160e-23
Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 0

Query:    6 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQ--FETYHDGEVL--KLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRL 147
            D E+A  L  GD+F N +CLSNAEV+V+LEKQK  YE ++  +T  F KT +YV+RF G     A  ++ TELREAL    F+   +GE +  +L +FE+  L+NL     EVEE +ALIPSL ++  E++IE +L IV   Q   L
Sbjct:   10 DTEDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGEKVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIVSPVQAQTL 154

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: F0W0U0_9STRA (Uncharacterized protein AlNc14C5G725 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.570e-23
Identity = 65/148 (43.92%), Postives = 93/148 (62.84%), Query Frame = 0

Query:    6 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSAT-TELREALQQ--FETYHDGEV--LKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRLY 148
            D E+A  L  G++F + +CLSNAEV+V+LEKQK  YE ++  +T  F KT +YV+RF G        A+ TELREAL    F    D  V  ++L +FE+  L+NL     EVEE ++LIPSL ++  EE+IE +L IV + + +R+Y
Sbjct:   10 DTEDAAELNLGEDFRDETCLSNAEVAVILEKQKQDYENQEKQLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNLNP--EEVEEAVSLIPSLSKRYAEEEIEEILGIVSR-KAARMY 154

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BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A067CZ22_SAPPC (RPOL4c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZ22_SAPPC)

HSP 1 Score: 98.2 bits (243), Expect = 3.490e-23
Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 0

Query:    6 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSAT-TELREAL--QQFETYHDGEV-----LKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 141
            D E+A  L  G++F+  +CLSNAEV+V+LEKQK  YE ++  +T  F KT +YV+RF G        A+ TELREAL   +F   H  +      ++L +FE+  L+NL     E EE +ALIPSL ++ TE+DIE +L+I+ +
Sbjct:   11 DTEDAAELILGEDFQGETCLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNLNP--EEPEEAMALIPSLQKRFTEDDIEEILSIIAR 152

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FT81_ECTSI	2.110e-76	77.48	RPOL4c domain-containing protein n=2 Tax=Ectocarpu...	[more]
A0A835YSR6_9STRA	8.230e-29	46.76	HRDC-like protein n=1 Tax=Tribonema minus TaxID=30...	[more]
H3GHD4_PHYRM	6.140e-26	46.10	RPOL4c domain-containing protein n=23 Tax=Oomycota...	[more]
A0A3M6VV57_9STRA	1.740e-25	46.10	RPOL4c domain-containing protein n=3 Tax=Peronospo...	[more]
A0A8K1FR52_PYTOL	2.460e-25	45.39	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A8J5JCD5_9STRA	7.100e-25	45.38	Uncharacterized protein n=1 Tax=Phytophthora aleat...	[more]
A0A024TL56_9STRA	1.630e-24	42.31	RPOL4c domain-containing protein n=7 Tax=Aphanomyc...	[more]
A0A3F2S3S1_9STRA	1.160e-23	45.58	Helicase C-terminal domain-containing protein n=1 ...	[more]
F0W0U0_9STRA	1.570e-23	43.92	Uncharacterized protein AlNc14C5G725 n=1 Tax=Albug...	[more]
A0A067CZ22_SAPPC	3.490e-23	43.06	RPOL4c domain-containing protein n=4 Tax=Saprolegn...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 17..149 e-value: 1.1E-6 score: 38.2
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 24..142 e-value: 9.8E-12 score: 45.3
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 1..145 e-value: 4.8E-32 score: 112.5
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 5..143
None	No IPR available	PANTHER	PTHR21297:SF0	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4	coord: 5..143
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 4..143

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1709	contig	H-paniculata_contig1709:14016..23074 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1709.3962.1	mRNA_H-paniculata_contig1709.3962.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1709 14016..23509 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1709.3962.1 ID=prot_H-paniculata_contig1709.3962.1|Name=mRNA_H-paniculata_contig1709.3962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MQGADDEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTP
AFAKTMTYVKRFGGLGGNAQVSATTELREALQQFETYHDGEVLKLHQFEV
MQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRLYS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006590	RNA_pol_Rpb4/RPC9_core
IPR005574	RPB4/RPC9
IPR038324	Rpb4/RPC9_sf
IPR010997	HRDC-like_sf