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Homology
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: D7FT81_ECTSI (RPOL4c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT81_ECTSI) HSP 1 Score: 233 bits (593), Expect = 4.600e-74 Identity = 117/151 (77.48%), Postives = 140/151 (92.72%), Query Frame = 1
Query: 1 MQGADDEENANTLKFGDEF--ENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSATTELREALQQFETYHDGEVLKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRLYS 447
M+G DDEENAN L+FG E +++SCLSNAEVSVVLEKQ+ YE+KDINVTPAF+KTM+YVKRFGGLGG+ +++AT+ELREALQQFET+H+GE ++LHQFE+MQ+ANLMQADSEVEEVLALIPSLG +LTEED+EN+LAIVRKHQHSRLYS
Sbjct: 1 MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A835YSR6_9STRA (HRDC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR6_9STRA) HSP 1 Score: 112 bits (279), Expect = 5.310e-27 Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 1
Query: 22 ENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSATTELREALQQFETYHDGEVLKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSR 438
EN NTLKFG FE + CL++ EV +L + D+ T A+ KT+ +VKRFG + + + TTELR+AL+ FE D LH +E++ L NLMQADS V+E +ALIPSL +K EEDIE +L I+RK +R
Sbjct: 10 ENVNTLKFGPGFEEIQCLTHTEVYQILTSKTH-----DVQRTQAYTKTIEHVKRFG-TADDEKHAITTELRQALETFERDTDQGTETLHSYEIVSLCNLMQADSTVDEAIALIPSLSRKFKEEDIEALLDIIRKANAAR 142
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: H3GHD4_PHYRM (RPOL4c domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=H3GHD4_PHYRM) HSP 1 Score: 105 bits (261), Expect = 3.400e-24 Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 1
Query: 16 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQ--FETYHDGEVL--KLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 423
D E+A L GD+F N +CLSNAEV+V+LEKQK YE ++ +T F KT +YV+RF G A ++ TELREAL F+ +GE + +L +FE+ L+NL EVEE +ALIPSL ++ E++IE +L IV +
Sbjct: 10 DTEDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIVSR 148
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A3M6VV57_9STRA (RPOL4c domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VV57_9STRA) HSP 1 Score: 103 bits (258), Expect = 9.350e-24 Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 16 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQ--FETYHDGEVL--KLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 423
D E+A L G +F N +CLSNAEV+V+LEKQK YE ++ +T F KT +YV+RF G A ++ TELREAL F+ DGE + +L +FE+ L+NL EVEE +ALIPSL ++ E++IE +L IV +
Sbjct: 10 DTEDAAELNLGGDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLQKRFAEDEIEEILGIVSR 148
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A8K1FR52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR52_PYTOL) HSP 1 Score: 103 bits (257), Expect = 1.310e-23 Identity = 64/141 (45.39%), Postives = 91/141 (64.54%), Query Frame = 1
Query: 16 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSAT-TELREALQQ--FETYHDGEV--LKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 423
D E+A L GD+F + +CLSNAEV+V+LEKQK YE ++ +T F KT +YV+RF G A+ TELREAL F+ DG+V ++L +FE+ L+NL EVEE +AL+PSL ++ E++IE +L IV +
Sbjct: 10 DTEDAAELNLGDDFRHETCLSNAEVAVILEKQKSDYENQEKQLTGVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLAFQREEDGQVTEVRLEEFEIACLSNLNP--EEVEESVALVPSLQKRFAEDEIEEILGIVSR 148
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A8J5JCD5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCD5_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.640e-23 Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 1
Query: 37 LKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQFETYHDGEVLKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 423
L GD+FEN +CLSNAEV+++L+KQK Y ++ T F KT +YV RF G A +A ELR+ALQ HD EV +L +FE+ L+NL EVEE +ALIPSL + T+ +IE +L+++ +
Sbjct: 9 LNLGDDFENDTCLSNAEVAIILDKQKVNYIEQKKMFTSMFKKTQSYVTRFTGTKDPVANQAAVIELRDALQSLSFEHDDEVHQLEEFEIASLSNLYP--EEVEEAVALIPSLPKHFTDHEIEEMLSLISR 136
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A024TL56_9STRA (RPOL4c domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL56_9STRA) HSP 1 Score: 101 bits (252), Expect = 8.290e-23 Identity = 66/156 (42.31%), Postives = 95/156 (60.90%), Query Frame = 1
Query: 4 QGADDEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQFETYHDGE-------VLKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRLYS 447
Q A D E+A L G++F+ +CLSNAEV+V+LEKQK YE + +T F KT +YV+RF G A ++ TELREAL +E + ++L +FE+ L+NL E EE +ALIPSL +K TEEDI+ +L I+ + +R+Y+
Sbjct: 9 QHAMDTEDAAELNLGEDFQQETCLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTKDPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNLNP--EEPEEAMALIPSLNKKFTEEDIDEILQIIARTT-ARMYA 161
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A3F2S3S1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S1_9STRA) HSP 1 Score: 104 bits (259), Expect = 6.470e-22 Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 1
Query: 16 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGN-AQVSATTELREALQQ--FETYHDGEVL--KLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRL 441
D E+A L GD+F N +CLSNAEV+V+LEKQK YE ++ +T F KT +YV+RF G A ++ TELREAL F+ +GE + +L +FE+ L+NL EVEE +ALIPSL ++ E++IE +L IV Q L
Sbjct: 10 DTEDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGEKVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIVSPVQAQTL 154
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: F0W0U0_9STRA (Uncharacterized protein AlNc14C5G725 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U0_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 7.440e-22 Identity = 65/148 (43.92%), Postives = 93/148 (62.84%), Query Frame = 1
Query: 16 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSAT-TELREALQQ--FETYHDGEV--LKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRLY 444
D E+A L G++F + +CLSNAEV+V+LEKQK YE ++ +T F KT +YV+RF G A+ TELREAL F D V ++L +FE+ L+NL EVEE ++LIPSL ++ EE+IE +L IV + + +R+Y
Sbjct: 10 DTEDAAELNLGEDFRDETCLSNAEVAVILEKQKQDYENQEKQLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNLNP--EEVEEAVSLIPSLSKRYAEEEIEEILGIVSR-KAARMY 154
BLAST of mRNA_H-paniculata_contig1709.3962.1 vs. uniprot
Match: A0A067CZ22_SAPPC (RPOL4c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZ22_SAPPC) HSP 1 Score: 98.2 bits (243), Expect = 1.620e-21 Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 16 DEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTPAFAKTMTYVKRFGGLGGNAQVSAT-TELREAL--QQFETYHDGEV-----LKLHQFEVMQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRK 423
D E+A L G++F+ +CLSNAEV+V+LEKQK YE ++ +T F KT +YV+RF G A+ TELREAL +F H + ++L +FE+ L+NL E EE +ALIPSL ++ TE+DIE +L+I+ +
Sbjct: 11 DTEDAAELILGEDFQGETCLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNLNP--EEPEEAMALIPSLQKRFTEDDIEEILSIIAR 152
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 234.2 |
| Seed ortholog evalue | 4e-59 |
| Seed eggNOG ortholog | 2880.D7FT81 |
| Preferred name | POLR2D |
| KEGG rclass | RC02795 |
| KEGG ko | ko:K03012,ko:K11314 |
| KEGG Reaction | R00435,R00441,R00442,R00443 |
| KEGG Pathway | ko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169 |
| KEGG Module | M00180 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000288,GO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0000932,GO:0000956,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005694,GO:0005700,GO:0005705,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009301,GO:0009408,GO:0009452,GO:0009628,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034062,GO:0034248,GO:0034250,GO:0034402,GO:0034605,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035770,GO:0036260,GO:0036464,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045948,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098687,GO:0098781,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902494,GO:1990234,GO:1990904,GO:2000112 |
| EggNOG free text desc. | recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex |
| EggNOG OGs | COG5250@1,KOG2351@2759 |
| Ec32 ortholog description | RNA polymerase II, Rpb4 |
| Ec32 ortholog | Ec-06_003770.1 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | br01611,ko00000,ko00001,ko00002,ko03021,ko03036,ko03400 |
| Exons | 4 |
| Model size | 885 |
| Cds size | 450 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1709.3962.1 >prot_H-paniculata_contig1709.3962.1 ID=prot_H-paniculata_contig1709.3962.1|Name=mRNA_H-paniculata_contig1709.3962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MQGADDEENANTLKFGDEFENVSCLSNAEVSVVLEKQKDVYEQKDINVTP
AFAKTMTYVKRFGGLGGNAQVSATTELREALQQFETYHDGEVLKLHQFEV
MQLANLMQADSEVEEVLALIPSLGQKLTEEDIENVLAIVRKHQHSRLYS* back to topmRNA from alignment at H-paniculata_contig1709:14016..23509+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1709.3962.1 ID=mRNA_H-paniculata_contig1709.3962.1|Name=mRNA_H-paniculata_contig1709.3962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9494bp|location=Sequence derived from alignment at H-paniculata_contig1709:14016..23509+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGAGCGGACGATGAGGAGAACGCAAACACTCTCAAGTTCGGAGA
TGAGTTTGAAAACGTCTCCTGCCTGTCAAATGCTGAGGTTTCAGTGGTCC
TGGAGAAGCAGAAGGACGTTTACGAGCAAAAGGATATCAATGTCACACCG
TGAGTGCTGTCTCATGTACTCTTTATACAGTTCCTAGCTCATGCCCAAGA
GACGACGAACGTGATAACTGTAGCACCCACCTATCAGGCCTAGTAGGTCC
ATTAGGGGGAAGAGCCAGCCTGCGACAGAAGGCATTCCCCTGTAATATGT
ACCTTCAAGGAGGCGGGTGCCACCACAGGGTCAGAGGACACCTGTAATAA
GAGTTTGACCAATACTTTCGGGTAATTCGAACTTAGATATGATGAACATC
AAAGAGTAGTTGTTTGTGAAACTATTGAATTAACTGAAGAATTTCGTTCC
TTTAACTTTGTTACTCCTTGGTCAAACTAAAATAATTTGTGGTGGTATTT
TACTTCATGTTTTTGATTTATTTTTTGTAGTAAATTATATTTTTTATCGT
CTAGATATAAAACCTAAAATTTGTTTATTCTATTATATTTAAGATCTTGG
ATACACTGGCCTATCAAGTCTCAGCTGTCGTACAGCACCGACCCGGTGTT
AAGAAAACAGGAGGTAAGAACTTGAACTCGAATTTTTCAAAAATGACCTA
GTTTCTCGTACGAAGTCGTGCTTGAATATTATCTTCAAATAAATAGTGGC
CAGGTAAGAAACACCCTGAATATATAGCTCTTATCGATCAGAAACACGTG
CATTGAATAGGCGTGGGCTAAGATGAGAAATCGTATCCATGTATTTGTTG
CTTATGACAGTTACTTCTTTTCCTTTTCATCGTGCATTAGTTCATCCATC
AAAAGCCTCGGTCCAAAGTTGGAAATGTAGCGCCTCGTTCATGCCTTACA
TTATCGTGCGGTGGGGGCAGCAGTTCCACTCGCTCGTCAGTGTTGGAGAC
GACTTTATACTCAGAGAAAGTTCTCCCTTCCGCACGCATTAAGTTTTTGT
TTTTTCGTCACTGATTAGTTCGTAGGTTCCCCCGGTCTGAAGCTGGCGTG
TAATGTCTAGGTTCTTGCCTTATATTGTTGCGCAGTAGGGGTCTAAACGC
TAACCCGAAGTCTTGGATACCGAGTTGCATCAAGGGGCGGTCAGGAGCAG
AACGTCGAACTCGGACGGGAAGGGCACGGCTTCCAAATGTTCGAATGTTC
GTAACTTTATTAATCAACCGGGATAAGTGTGTGCTTGCTTTGCAAGAGGT
GGAATGTGGCGACGTGGATGGTACGGAGTGATATAAATGCACATGCACCG
TAATGCAGTGTCAACTGGATGTGCCGTGCGTTGTAGCATTGTAGGGGGGT
AGAAAAAGGCTCTTTTTTAAGAAACAACGAAATAAGAAAGAGCCAGATTT
AGCACTGGGTGCCAATAAGAAATGGCTATTTTTTAGAAATATTGCTTATG
ACATTCGCCGCGCCGTCACAAGGTTTCAAGCCTCACCCGATACAAACATT
TCTTATCATCGGGTCGGTGCTGTACGCCAGTTCTGATGAAATCTCGATCA
ATTTTTACGCGAGAGATGTATTCGGATCTCCGCCGTTCGAAATATCGTGA
GGGATTACTCGCAGCTTAAGCACCTCTGTACCGCTATCAAGTACACAGGC
AAAGGAGGAATTTGGTCCAGAATGAGACCCGCAGCCACTGAAACCCTCCA
GATGTCTCCTAGATTTGCTCAGTACACGGGCTACCCCAAACATATGGGCT
TTGGTCCGTTGGGGAAGATAAAACCTAGGGCATACGCCCCAGTACCTTGA
TGAGAGGGGCTCGCGCCCTCACCCCTGATGCCAAAAACGTTGCTACCCGA
AAGCAGCCATGTTTTAATACCCAAGGAGATTCTATTAGAGCCTTACCATG
GTTTCCGTCGTCTTCATCTTGGCTTCGATCTCCCCTATCTTCCGAAGAGG
CCTTGGGCGCCGCTTATGATGCGTTAAGGTTCCACGATTCCAATGACTTT
TCTGTAAATTCCCCCCCGAGGACTAGGGTCTTCACCATGTCATCCGGCTC
ACTATGTCTCAGGTTCCCAGTAATAGCTTGGGCTTCAAGATAGGGCCAAA
CAGCAGATGTTGCCTGAGGTCTCTCCACTCCGGGCATGTGTTGCAAGGTC
TCCGGAATCTTGGCCTTGCAACGGGAACACTCAGTCAGGCAGCGAGAGTG
GATAAGTTGTCTTTTAGCCAGTCTCTCGGCCGACCAGAAATCTCCCACTG
TACCCTTGACGATCAGACTTGTCCCCAGGGCAAGCAGCAGGTTACCTCCA
GACTTGGCTGTTGTGAGCAGGTTAATCGAGTAGTTAGCTGTTATCAGTCG
CCCAATACCGAGTGCTTTACTCTCTCTTCCCTCAGCCACACAGCTTCCGT
TATTGCCCGACTCCTTCTATCGGGGAACAAGCTTTTCCAACCATCAATGA
TGGTCATCTCTGGTGGCATCTCTTCTATGTACTCTGCAAGTGGCTGACCG
TACCGCTTCATCCAGTGGCACGTTCCTGTGGTCCAAGCCTGACAGATGCT
CTTAAAAGGCGTGTCTACCGGGGTTTCTCACTCAGGTTGGCAGCTTTCCT
GCCTTTTGAAGTGCGCGCGCGCGGCGGCTACTGCACTAGCGCAGATCGGT
GGTATACCACTCTATGTCCATAAGCCGATGTTTTACCTGACAATCTTGTA
CTCATATTGACCATGAGCCGTCACGTTTGATTCAGAAAAATATGTATCTT
CTGCGATCGACTTATTCATACCATGCACTTCAGCCCCAAAGAGGAGTCGA
GGTTCGATGATCTCTCGTGCTACTGTTACTTTCTCGGGAAAAGAAGTGCT
CGCGCATCTCAGGAATGGAGTAATCTTAGCAATTAGTTCTTCATCGCTTA
TGACTCTGTTGGCCACCATTTTCTCCACGTTCAGGTCCTTGTGGAGATTC
ATCCCTAGATATCTGTACATGTCAACAATTGAGATCCTTTATCCGCTCAA
GATATATCCTTCCGGCTCTAGTAAATTTTTCGTTGTCCTCCTCCCTCCTG
CCTGCCATAACTCCACACTAGTGGATACTCACTACCTTCTAAATGATCCA
TCATCTATTGCCTAAGGCGATCCAAGTTTTGAGTTAACATCCGCCATGAC
AGAGTTACCCCACTAGACCATCTGCGAACAATAGACAGGACGTTCGCTCC
GCGGTCGTGGTACCCACGAGTACCCCCATCTTCTTCGATCCGTCTGGAAA
ATCATTTATAAATGCATTTTAGTCAGTGATAGTGGGCAGCCTCGCTTTAC
TCTACGATCTAAATTAGGTCTACTGGATCCGAGGTCTCGGCTCCACAATG
AACGGTGGTCCTACTTTACCGAGCCCGAATATACTGTAACATCCGCTTTC
TTACGCCGGGAAATTCCAGTTTAGCTAGCATGGCTTCGTATGGCGTAGTG
TCATACACTTCCTTGAAATCGACGAATGAAACTATATTGAGGAGCGGCGC
GCGCGCAGCCCGTATGCTTTGTGTGAAGGTGGTACTGCTGACAGAACTGT
AGTGCACTGGTTAGAGCTGTACTAGACAGTTGGAGAGAGATTTCGACTGG
CCGCGGTACAGTTGGTTATTCTGCGTGGCGATGGCACACCCTACAAACAG
CAGACGATAGGCAAGCATAGAGCAGCAAACAGTAGCACTCTTGGCCGGGC
GAGATCAGACCCGAACGGCGCGAAGGAGTCAATCACAGGACGGTAAATTC
CCCCATATTTGTACGAAGTACCTATAAAGCATTACTATACTGTAACAGAT
CTGGACTCGCACGGTGAACCGGTTACCCAATTCATGTCGGTTTTTTAAAA
GCGGGGGAAGAAAAAAGAAAGAGAGAAAGAGTTCGTGTATCGACTAAAGT
TGGAGGTTTTTGCGAGTTATACTGCTGACAGGACCATAAATGTGAAAGAC
TCGAATATCACACGAAAAGAGAGAGTAGCAAAGGCTGATACCGCGGCACA
GAATTGTGCAACATACGACACTGCGCTTAACACAAAACTCCGCACAATCA
ACATCAATCTGGTCGGAGCCAGAGAGCGTCTGGGCAGGCGCCTTGTTCTG
ATCTTCATTTCTATTGGCCACATCTTTCAGCGCAATCAGACTCTTCACTT
CAGTTTTCTCCTCCGTAACGTCGTCAGCAGCTTCCAGGGCACAGCTGCAA
CTTCCGCAGTCAAGACGGCATCACGATAGCTATGATCGTTATCTATGCTA
CGCTCCTGCTCTGCCAACCCAGCGTGATTGATGCCGTCACTCTCTTGAGG
TACGGTTGTCCCACGAAGTGCAGATGGTGTTGATGCTACTGTTGGGTCAG
AAGTTCGAATTATTAGAACGATCGGCATGTCCGCCTGTTGTGCTGGAACA
GTCTGTGCGTTTCCCTTCCTCTCAGGTTTAGTCGATGTCTGCAGACAGAG
AGTGCAGATCTATATGTACTGTTACAGACGATTTACTGCTGCTGTATCCT
ACCCGCATCTCGTTGCCCAGGGATAACAAGCAGTTACGTCATGTTCTACG
ACGATAACCTGTTCACGTGATAATTGGATGGGAAAATGGCCTTGTGAAAC
CCTGCCATCGAAAAGCGTATCTCCTTCATCAATTTTAGTTTGACGTACGT
GAAAGGCAGCTTGAAATAGCACAACACTCCGTGTGCTTCGTGTGAAGGTA
GTGCGGCTAATCAACTGCAGACGGACAGACCCGGATTCATCAGAATATAG
TGAAGTTGTTGTGCACTGCGACGGAAGAAGTAAATACTATAGTAATACTG
TCTGCAGTACAGTGTATATATCGCAACACCGTGTTTGTGCTGTGTTACTA
CCGTTGCGGCAGAACAATGAAAAGAGAGTGAGAAATGTTGGCGGGCACCA
GCATCCCTTGATAGATCCGAGCAATAGCAGTTGTGCACGCGTTTTTCGCA
TGCAATTTTTCCTGATGGCACCCAGAAACAGCAGCAGATAGCCGGCCCCA
AGTTGTGAAGGGCGCATTGTTAACCTTTTTTATAACTATGATTTTCCCGA
GAGCTCTCTGTTTCGGTCTTCTCGGTCGCTCACAGAGCCGCATTTCGGTC
GATGCCATTGTCGGAGTGACCGCTTCCGTCCGTTTCGACTGCTCTTGCTC
GAAGCTTGATTTCTTCCAGACGTGCCCACGCTCCGTTTTCTGTGACGAGG
ACCCGGGATGGGTAACTTTGGCGCGGGGAACATGCTTTGCCTGTTTCTAT
CCCTGTCGGCGTCGACACTTCCGTGCGCCCCTCTGTGCCTGCCGTTGCTT
TTTCTGGAACAACTGTTGAGATGACAGAGCCGTTTGCGGATATATGTATA
CCCCCTCCGTTCAGTAAGTAAAGGAACTTAGATTCGTGTGAGACATTAAT
GATGTCCCTTTCCTTTTTGTCAAAGTTGGAATCCTTAATGTTCGTTGGGT
TAGATCCCAATTTTTCACGGCAATCCGTGAAGCCCATGGCGTGCGTAAGC
GGCTCAACAAAATGAAGTGGTCCAAAAATCACTCCAAAGGTGTATTTTCA
GGCCTACTCCTCCCCTCTTACACGCTTCTTCGATGATCGCTAGGCAGTCT
TCAGCACGCAATGCGCCAGATACCGATTTTCCGGTCGAAGTTACGGTCCG
GGTCCGGCCGAGCGTTGGCCATGACATTGGGGATTTGGTTCCGGTGCTGC
ACCCGCCCTTCGGTACGTCTTCATCAGGGAAGATGCGGACTTTCTTTTTC
TCTCTGATGAAGTAGAACCAGGTCTCGTTAACCATGATCCAGTTGTCCAG
CATCTCAAATGTGTGGGTTCCTTCATTGACCAGATCGCAAACAAAGTCAG
TCCACCCTGTGCTTCTTCTGGACGCTGGAGAGGGGTGGCTTGATGCGGCG
GCGAACGTGCGCCGCGCCATGGTCGTCGAACCACTTCTTTGTGGTAGCAA
CCGAGTATTGCTGACCGATCTCCTCCTCTAGCGCATCGCGGACCTGTCGC
GGCGTAAAGTTTCGATGCTGCGCGTTGATACTCCGGAGCACGACTTCCTT
TGTAGGTGTGCACGGAGAATGCCGCCCGCTCTTGGTCTTCGTGCTGAGGT
CGATCTCGCCGGCTGGAGAACACATCTGCTTGCTCACTCTTGTCCACAGC
TTCGACGGGTACTTTTGGCCGCAGCCATACTTTGCACAGAGTCGTGCCGG
CTCACCATCTGGTAATTTCGAGAGACCCGGCTTAATTTACATAGCGATGT
CGATTGCAAGCGCATACCTCCTGCCGAGAGGCAACTCCTTGCCTCTGCAG
CGTGGTGGGGTCACCGGGGCGGGCTCCATCGTGTGTTGTGTGCTTGTGTT
GCACCTAAAACAATTGGCCGGGACTGTCAAAAATGATTAAAATATAAGTG
ATTTCGGCTCTTCTTTTGTTATGAAAGATTTGAAACCATTCTTTCCGGTC
GTATTGAGTTGAATCTCTGCAGAAGTCTCTTTCGATCGATATCGCGAGCT
CGCACTGAATCGCCGTAGAGCTGGAGATATGGCGCGTCAAACCTAACGTC
CTTTACTTACTGAACGGAGGAAGTATATATATATATATTCGATGCCGCTG
ACCGTTGCCCGAGTGGTGTTTTCTCTGTTTCCATTGCGCTTGTTCGGAGC
CTGCAATAGGGATGGACTATGTTGTACTGTGGTACGTGCTGTCCCCTCTA
CTGTGCCTCCTGATACCGCTTGACGTTCTGCGTTGTCAATAGCTTCTATC
GTGTCTGATTTTTTCCAACCATCATGTACCAGGTAGTGAATAGCTTTCAT
TGAGCTCGAGTGCTCATGCCTTATGTGTGGCATGAATCCTACACCATTGT
TCCTTGGTCTTGGCTGCCGCTCATTGATCATTGCCGCGCCGGCGGCAGAA
ATCTTGCCGTTTGTTGACAGCAGGGCGTCGATGGTTGTTCAGTGAGACGC
CAGAGAAGAATATTTCCTGCTCATTTCCGATGTGCATCCGTTCGTCCCTG
CAATAACAATAACAGTGGTGAATGCACACAGTAGGTACATTACAGACAGT
GTAGTGTTCCCACCTTCACTCACCATATATTGAATTAACCATTAATCGTT
GCCCTTGGCCATCGCTCATTGGGCGTTGCCACGTCAGCGGAAGAAATCTC
GTGGCGGGAACCTGCGGCACGTGAGCGACGGACTCTGCCCCTTTCTTTAT
ATCCGAGATGGCGTGTCCACCCGCGCTATATACCCCACTAGTGTTTCTTG
TAATATTATACCCCAGGACTCAATCTAACCCCTTCATAATCCCGCGTGAA
AACAGGCACATTCACAGATCGGATTGTTTTCTGACACAACGCCTCCGACA
TGATTGCGGGGATAGTGACTTGATACATGCAAAGACGGTCGTGTTGAGTA
CCACAGACAGGGCAGTTGGCATGGTTCGGTGCACCATGACTACAGCATTC
GATAGGAACGCAAAGCACACACCACAGGCCGGGTGACTGCCAGTGCAGCA
GTGTGCGTGTCACATGATAAAAGCCGCATACCAGGGTATGGAAGCAAGCA
AAACCCATCAGCTAATGACAGGGACGAAGTCAGATCTACCGCAACTCTAC
AGTGCTCTGGGGCAGCAAGAGTGCATTGTACTCTCCATTTCTTGAAACAT
GTAGCTAAATATGCGGTGACTTGGTTTTCTTTTTGTCCAACCTAGTCTTG
GTTCTTGGTCGTTCACAGGGCATTCGCCAAGACGATGACATATGTGAAGC
GATTCGGCGGACTGGGGGGCAACGCGCAAGTCAGCGCCACCACAGAGCTT
CGAGAGTGAGTACTTCCACCATGTTGCTGGTACCTTCAAACCCCTGGTAT
CAATTGAACGGCCGCTTGTGGGTAGACAGAGCTGCAAACTGATGATCTCC
GCCGGATTCTGTGTACTCCTCCCTCCCCCTGCCGCCACTTGTGTTTTCTG
CGGCAACAAGAATGAACATAGCTCCAAGCAATGTGTCTTCGTGCATCTTG
ATGGCCCCCCATTTCTGTTTTGAATGGATTGCGAAGAAGAGGAAATGCAG
TCCCCAACGAGGCTTTTTATATTGCTATTAGTGCAGCACCGGATCGAGAT
AGCTCATGGGCTTCATTCACGTTTTCTCCTCGCGGACGAAAACGTTTGCG
CATTGTGTGTCTCACCCGGGTTCATGTTTTTAGTGTGTGGTTCCGGTGTG
CTTTGCGCTCGCAGAGCCCTTCAGCAGTTCGAGACGTACCACGATGGAGA
GGTGTTGAAGCTGCATCAATTCGAGGTTATGCAGCTGGCTAACCTCATGC
AGGCGGACAGCGAGGTGGAGGAGGTGCGGTGTTCGTAGCTGGGTTCCGAC
TTATTTCGCCTGTTGGGGTTGCCCTGTGCCCACAATTACCAGTAGAGAGC
TTTCTCTTTCTACTCGCCAGTCCACGCCTACAAGCTTCCTGTTTCACCGC
ACCCAGTGATCTATACTACGCCAATTAAATAGCGTCTCTGCTGTACGGGT
TGTGTTTTGTCCTTCGTTCAGCATGTCAGCACATGACATTTGTGGCACGT
TTGGTAGTGTAACAGCCGCTACAGCGGTCGTAGTAGTCTCCCTCGTTCCA
ATAATTAAGCGTTCTACTGCTTCAACATTTTCCGCGTTTTCGGCCTTATT
GTGGTGGTGACCTCGTTTCATCAGCGCGAACAACCCATGGGTCGGGTTCA
GGAAGCTTTTCAGACCGCGTTGGAATACTTGACTCCGTTCCAAGAAGAGA
ATTTGCATGCGTGCAGGGTTTCCCCTTTTCTGTTGTTACTTGTCACATTA
CAATGAATCCACCAAATCGGCTTGCGCCTGCGACCAGAGTTTCAAGTGCC
ATCTACCGGCTCTCCAGTAATCGTCGCTGCTATTCGGACGCCATTTTGCT
ACAGGTGTTGGCCCTTATTCCAAGCTTAGGCCAGAAACTGACGGAGGAAG
ACATCGAAAACGTGCTGGCGATCGTGCGGAAACACCAGCACTCGCGCTTG
TATTCTTGAAAGCACTTTCCGATGTTGCCTGCATTTCGGGTGACTTCAAT
CGTGCAAATGAGGGTACCCTGTTCGGTCGTGAACGTACCGGTTGATTAAC
TCTTCAGGGTCATGTACATGTGTACGGGTCGGATTTGACGAGTATTTTTC
GCTGAAGGTGTGAAGGGTCTCCAAACTACAGGCGAAAGAGAGTCTTGTAG
AGTGGCGGTATTGTAGAATCCTCGTTTGCTTTTGCAAGGCAAAGCTTGGG
TGCATTCATTGAAGGTTGTGCTTGCGATAGAATCGCTTTAATGAATACGC
TTGCTTTTCGAGGTCAGTGCGACGGCGTCTCATTGTTTCAACGCTCTTTC
GAGAGCATTTATTGTCACTGCAAATAACCACAAAACCGTGTTTTTGCTGC
TAGCGTCAAGGAACACAAATGGCCTCGGAAATCTCCAATCTGTT back to topCoding sequence (CDS) from alignment at H-paniculata_contig1709:14016..23509+ >mRNA_H-paniculata_contig1709.3962.1 ID=mRNA_H-paniculata_contig1709.3962.1|Name=mRNA_H-paniculata_contig1709.3962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig1709:14016..23509+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGAGCGGACGATGAGGAGAACGCAAACACTCTCAAGTTCGGAGA
TGAGTTTGAAAACGTCTCCTGCCTGTCAAATGCTGAGGTTTCAGTGGTCC
TGGAGAAGCAGAAGGACGTTTACGAGCAAAAGGATATCAATGTCACACCA
TGCAGGGAGCGGACGATGAGGAGAACGCAAACACTCTCAAGTTCGGAGAT
GAGTTTGAAAACGTCTCCTGCCTGTCAAATGCTGAGGTTTCAGTGGTCCT
GGAGAAGCAGAAGGACGTTTACGAGCAAAAGGATATCAATGTCACACCGG
CATTCGCCAAGACGATGACATATGTGAAGCGATTCGGCGGACTGGGGGGC
AACGCGCAAGTCAGCGCCACCACAGAGCTTCGAGAGGCATTCGCCAAGAC
GATGACATATGTGAAGCGATTCGGCGGACTGGGGGGCAACGCGCAAGTCA
GCGCCACCACAGAGCTTCGAGAAGCCCTTCAGCAGTTCGAGACGTACCAC
GATGGAGAGGTGTTGAAGCTGCATCAATTCGAGGTTATGCAGCTGGCTAA
CCTCATGCAGGCGGACAGCGAGGTGGAGGAGAGCCCTTCAGCAGTTCGAG
ACGTACCACGATGGAGAGGTGTTGAAGCTGCATCAATTCGAGGTTATGCA
GCTGGCTAACCTCATGCAGGCGGACAGCGAGGTGGAGGAGGTGTTGGCCC
TTATTCCAAGCTTAGGCCAGAAACTGACGGAGGAAGACATCGAAAACGTG
CTGGCGATCGTGCGGAAACACCAGCACTCGCGCTTGTATTCTTGAGTGTT
GGCCCTTATTCCAAGCTTAGGCCAGAAACTGACGGAGGAAGACATCGAAA
ACGTGCTGGCGATCGTGCGGAAACACCAGCACTCGCGCTTGTATTCTTGA back to top
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