mRNA_H-paniculata_contig1709.3961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1709.3961.1
Unique NamemRNA_H-paniculata_contig1709.3961.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: A0A6H5KFG6_9PHAE (DUF1995 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG6_9PHAE)

HSP 1 Score: 435 bits (1118), Expect = 8.550e-146
Identity = 209/272 (76.84%), Postives = 240/272 (88.24%), Query Frame = 3 
Query:  489 DPDVTELPDSFEDSIARMGKGTLQAMDEGRKLLRIDFDTSAGDETYTTLKSSLEMAKQLTKLLAEEVICGKEGA---------TMTLFFPDAGSAALAKYEWGVGTEAAEVPAGVRFCTVKTEEPADTDVGCILLCPRNSEADFALELVRKVDERGQFLVLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKRYTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDATPDFLNTVAKFVRDFGNL 1277
            DP VTELPDSFEDSI RMG+ TLQ M+EG+K LR+DFDTSAGD+TYT LK+SLEMAKQLTKLLAE +ICG EG          T+ LFFPDAGSAALAK+EWG GTE A+VPAGVRFCTVKT+ PADTDVGCILLCP+NSEADFALELV+K++ RGQF+VL+NPALINMG TGYGLAGRRIRDE+IS F TTYYLRTLPWGAVT+E+GKRYTVWQDD ++P+GYRLLK V+ERP GEALDDIYN+ANGL ++D+ P+FL++VAKFVRDFG L
Sbjct:   92 DPFVTELPDSFEDSIVRMGRSTLQCMEEGQKRLRVDFDTSAGDDTYTKLKASLEMAKQLTKLLAEALICGGEGVEGGEEGTGQTLALFFPDAGSAALAKFEWGSGTENAQVPAGVRFCTVKTDSPADTDVGCILLCPQNSEADFALELVKKIEARGQFMVLVNPALINMGITGYGLAGRRIRDEIISTFQTTYYLRTLPWGAVTKEYGKRYTVWQDDPDDPSGYRLLKAVSERPAGEALDDIYNVANGLADDDSAPEFLDSVAKFVRDFGRL 363
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: D8LR77_ECTSI (DUF1995 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR77_ECTSI)

HSP 1 Score: 410 bits (1054), Expect = 8.640e-138
Identity = 197/255 (77.25%), Postives = 226/255 (88.63%), Query Frame = 3 
Query:  540 MGKGTLQAMDEGRKLLRIDFDTSAGDETYTTLKSSLEMAKQLTKLLAEEVICGKEGA---------TMTLFFPDAGSAALAKYEWGVGTEAAEVPAGVRFCTVKTEEPADTDVGCILLCPRNSEADFALELVRKVDERGQFLVLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKRYTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDATPDFLNTVAKFVRDFGNL 1277
            MG+ TLQ M+EG+K LR+DFDTSAGDETYT LK+SLEMAKQ TKLLAE +ICG  G          T+ LFFPDAGSAALAK+EWG GTE A+VPAGVRFCTVKT+ PADTDVGCILLCP+NSEADFALELV+K++ RGQF+VL+NPALINMGTTGYGLAGRRIRDE+IS F TTYYLRTLPWGAVT+EHGKRYTVWQDD+++P+GYRLLK V+ERPVGEALDDIY+IANGL +ED+ P+FL++VAKFVRDFG L
Sbjct:    1 MGRSTLQCMEEGQKRLRVDFDTSAGDETYTKLKASLEMAKQFTKLLAEALICGGGGVEGGEEGTGQTLALFFPDAGSAALAKFEWGSGTENAQVPAGVRFCTVKTDSPADTDVGCILLCPQNSEADFALELVKKIEARGQFMVLVNPALINMGTTGYGLAGRRIRDEIISTFQTTYYLRTLPWGAVTKEHGKRYTVWQDDADDPSGYRLLKAVSERPVGEALDDIYDIANGLADEDSAPEFLDSVAKFVRDFGRL 255
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: A0A835YKF2_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF2_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.230e-76
Identity = 126/246 (51.22%), Postives = 165/246 (67.07%), Query Frame = 3 
Query:  540 MGKGTLQAMDEGRKLLRIDFDTSAGDETYTTLKSSLEMAKQLTKLLAEEVICGKEGATMTLFFPDAGSAALAKYEWGVGTEAAEVPAGVRFCTVKTEEPADTDVGCILLCPRNSEADFALELVRKVDERGQFLVLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKRYTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDATPDFLNTVAKFVRDFGNL 1277
            M    ++A++ G + +R+DFDTS GDETYT LK SL M ++L  L+A  +    +  T+ LFFPDAG+AA+   +W VGT  + VPA V F  ++ + P  TD G ++LCPRNSEAD  L LV +V   GQF++L+NP L+NM TTGYGLAGRRIRD V++ F + YYLRTL WGAV +  GK Y+VWQ+D     GYRLL+ V  +P  E L++IY+  NGL     TP FLN  A F+RDFG L
Sbjct:    1 MADDVVRALETGVRNVRVDFDTSVGDETYTMLKQSLPMTQRLVSLVAPRL---PDNGTLRLFFPDAGTAAMMVRDWRVGTNESLVPANVAFSGMRRDSPEPTDAGILVLCPRNSEADDTLRLVEEVAAAGQFMLLVNPELVNMATTGYGLAGRRIRDLVLAKFTSAYYLRTLTWGAVAKRLGKSYSVWQEDDALEAGYRLLRNVDAKPTFEDLEEIYDEENGLSNRADTPAFLNAFADFMRDFGRL 243
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: A0A7S2FCL6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FCL6_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.340e-51
Identity = 114/255 (44.71%), Postives = 148/255 (58.04%), Query Frame = 3 
Query:  501 TELPDSFEDSIARMGKGTLQAMDEGRKLLRIDFDTSAGDETYTTLKSSLEMAKQLT----KLL-------------------AEEVICGKEGATMTLFFPDAGSAALAKYEWGVGTEAAEVPAGVRFCTVKTEEPADTDVGCILLCPRNSEADFALELVRKVDERGQFLVLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKRYTVWQDDSNEPTGYRLLKTVAERPVGEA-LDDIYN 1193
            TELPDSF+D+       T +A+++G  LLRIDFDTSAGD TYT LKSS+ MA++ T    +LL                   AEE   G E  T  L+FPDAGS ALA  +W VGT AA VP+ V+ C++ ++ PA TD   I +CP+ SE +    ++R  +E     V INP L++MG TG+G AGRR+R E+I     TYYL+TL WGAVT  +   YTV+Q D +            ERPV E  L DIY+
Sbjct:   45 TELPDSFDDACVTASSATARALEDGWNLLRIDFDTSAGDMTYTKLKSSIPMAQKFTIQMCQLLSLDEKSESSNDLENISGDPAEEEATG-ETKTARLYFPDAGSTALALRDWMVGTPAALVPSCVKLCSLSSDRPAATDQIIIFVCPKASEVEAVKMVMRDAEEMVIPTVFINPELVDMGVTGFGAAGRRLRQELIDRMVNTYYLKTLQWGAVTMAYPGGYTVYQTDESAXXXXXXXXXT-ERPVNEEQLMDIYD 297
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: A0A7S3NLL6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLL6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 5.580e-50
Identity = 104/271 (38.38%), Postives = 153/271 (56.46%), Query Frame = 3 
Query:  480 SDLDPDVTELPDSFEDSIARMGKGTLQAMDEGRKLLRIDFDTSAGDETYTTLKSSLEMAKQLTKLLAEEVICGKEGATMTLFFPDAGSAALAKYEWGVGTEAAEVPAGVRFCTVKTEEPADTDVGCILLCPRNSEADFALELVRKVDERGQF-LVLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKRYTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDATPDFLNTVA----KFVRDFGNL 1277
            +D++   ++L +SFE +        +  +  G+ L+RIDFDTS GD TYT LK+SLE  + +   LA  ++     + + LFFPDAG+AALA  +W +GT  A + A V   +   ++P+  D   +++CPR SEA     L+  V    Q   VLINP L++MGTTGYG AGRR++  ++      Y L+TLPWGA+   +   Y+V+Q+D+N P GY+LL T    P GE L++IY   N  + +D      N +A    KF   F  L
Sbjct:   43 ADINERASKLDESFEIATTVAAGAVMDCISRGKTLIRIDFDTSNGDATYTKLKNSLEFTRYVAANLATRMLAQDTNSQLCLFFPDAGAAALAAQQWKLGTPEAMLGANVNLKSFPRDKPSKEDSNFLVICPRASEASAVEILIDDVARTQQKPTVLINPELVDMGTTGYGFAGRRLKQRLLDELTQAYLLKTLPWGALALTYPNLYSVYQEDANAPDGYKLLTTRPTLPNGEELEEIYAEYN--KNDDDGDGLFNNLATGFSKFADGFSKL 311
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: A0A4D9D446_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D446_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.450e-49
Identity = 110/274 (40.15%), Postives = 155/274 (56.57%), Query Frame = 3 
Query:  498 VTELPDSFEDSIARMGKGTLQAMDEGRKLLRIDFDTSAGDETYTTLKSSLEMAKQLTKLLAEEVI-------------CGKEGATMTLFFPDAGSAALAKYEWGVGT--EAAEVPAGVRFCTVKTEEPADT--DVGCILLCPRNSEADFALELVRKVDERGQFLVLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKRYTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDATPDFLNTVAKFVRDF 1268
             +ELPDSF+D++    +   QA   GR  +RIDFDT+AGD TYTTLK+S+ +A  L + L +EV+              G EG  + + FPD GSA   + +W  G    +A+VP  VR C     E  D+  D   +++CPR SEA    EL+  +    + +VL+NP LIN    G+G+AGRRIRDEV + F   YYL+TL WGA+TR     Y++W +D  E  GYRLLKTV   P  + ++DI + A+   E       L+ +A+F+  F
Sbjct:   95 ASELPDSFDDALNIAVESAQQAFAAGRNRVRIDFDTTAGDLTYTTLKNSIPLALALAQYLGQEVMEEEKVVTDAEGKKAGYEGKQLVVVFPDTGSAVWVEQDWRAGKLGSSAKVPPSVR-CAAFPNEMVDSARDSAFLIVCPRASEAPATYELLTSLPADAK-VVLLNPELINAEVVGFGMAGRRIRDEVENKFERAYYLKTLSWGALTRRWPGGYSIWMEDEGEEEGYRLLKTVGRFPSLDEMEDIRDAAD--MEGGENRGVLSGLARFIDSF 364
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: A0A7S2XVG8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVG8_9STRA)

HSP 1 Score: 178 bits (451), Expect = 7.600e-48
Identity = 104/270 (38.52%), Postives = 151/270 (55.93%), Query Frame = 3 
Query:  519 FEDSIARMGKGTLQAMDEGRKLLRIDFDTSAGDETYTTLKSSLEMAKQLTKLLAEEVICGK------EGAT----------------MTLFFPDAGSAALAKYEWGVGTEAAEVPAGVRFCTVKTEEPADTDVGCILLCPRNSEADFALELVRKVDERGQFLVLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKR-YTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDATPDFLNTVAKFV 1259
            +ED+I +M     Q M  G+  +RI +DTS GDET+T L +++  A+Q T L   +V+ G+      EG+                 + ++FPD G+AALA  +W +GTE A VP  VR   +      + D   I++CPR+ EA    +L+ +VDE    +VL NP LINM  TGYG+ GR  R  V+     +YYLRTL WGAV ++   R +++WQ D +   GYRL++T  + P G    D ++IANGL+EE  TP F+N +   V
Sbjct:    1 YEDAIQQMADYCAQVMGMGKTRMRIVYDTSEGDETFTLLVATMSAAQQFTDLFTRQVMLGQKADGQVEGSDEEEAQDAQPEIADDMKIAVYFPDTGTAALAARDWKLGTEEALVPPCVRLAAIGDRTQPE-DKAYIIVCPRSPEAVGVEKLMAEVDESVP-MVLWNPDLINMDVTGYGVVGRGFRTRVLDVLTDSYYLRTLAWGAVAKQGPLRPFSLWQADESREEGYRLIRTFDQEPSGMDCQDAFDIANGLEEEKTTPGFVNFLGDLV 268
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: A0A7S2WGZ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGZ0_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.870e-46
Identity = 87/261 (33.33%), Postives = 152/261 (58.24%), Query Frame = 3 
Query:  501 TELPDSFEDSIARMGKGTLQAMDEGRKLLRIDFDTSAGDETYTTLKSSLEMAKQLTKLLAEEVICGKEGATMTLFFPDAGSAALAKYEWGVGTEAAEVPAGVRFCTVKTEEPADTDVGCILLCPRNSEADFALELVRKVDERGQFLVLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKRYTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDATPD--FLNTVAKFVRDFGNL 1277
            T+LP SF+ ++    + TL  + +    +R+DFDTS GD TYT LK+++ +A+     +A  ++  +    + ++FPDAGSAALA+ +W +G+  A VP  V+  ++  E P + D   + +CPR SE D    +V  V+++G  L+ +NP L++MG TG+G  GR +R+ +I+   T++ L+T PWGA+ R + K ++ +  D +E +GY+L++T  +    E LD +   ++     D++      N+V KF +    L
Sbjct:   75 TDLPASFDAAVDAAAQSTLDCLSDTWDRIRVDFDTSGGDATYTVLKNTMPLAQGFLAKVAPRLVDAENPGAVRVYFPDAGSAALAQRDWKIGSAEAVVPECVQLSSLSRELPEERDQAIVFMCPRASEVDALRAVVSAVEDKGIPLIFLNPELVDMGVTGFGAVGRMLRETLINTMVTSFCLKTTPWGAIARAYPKDFSTYVVDPDEDSGYKLMQTSQQPLDAEELDALLQGSSEGSSSDSSNGGGLFNSVGKFFQGLSRL 335
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: A0A7S2PCV2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCV2_9STRA)

HSP 1 Score: 172 bits (437), Expect = 9.620e-45
Identity = 111/327 (33.94%), Postives = 155/327 (47.40%), Query Frame = 3 
Query:  501 TELPDSFEDSIARMGKGTLQAMDEG-RKLLRIDFDTSAGDETYTTLKSSLEMAKQLTKLLAEEVICGKE--------------------------------------------------------------GATMTLFFPDAGSAALAKYEWGVGTEAAEVPAGVRFCTVKTEEPADT--DVGCILLCPRNSEADFALELVRKVDERGQFL--VLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKRYTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDAT-PDFLNTVAKFVRDFGNL 1277
            TELPDS ED+  +  K     +  G R   R+DFDTS GDETYTTLKSSL    +  K L+  +I G +                                                              G    ++FPD GSAALA+ +W + T  A VP  V   +V   +  DT  DV  +  CP+ SEA+F  +++ K +  G  +  V +NP L++MG TG+G+AGR +R+ ++     +YYLRTL WGA+TR     ++VWQ+D N   GYRL+K++   P    ++DIY+I NGL       P FLN +  FV     L
Sbjct:   45 TELPDSLEDAAQQAAKCCDDLVKFGDRNRCRVDFDTSVGDETYTTLKSSLTFGVEFIKSLSYALIPGAQQLKQDQMMRDIQAKAELTQLEGEIGPIESEEELRNNPNFERINQLQQIVANSGVMEEETKWNGPIFRVYFPDEGSAALARRDWKINTVEALVPPCVSLSSVGGVQAHDTTRDVVNLFFCPKASEAEFVEDILYKTEAGGNIVLSVFLNPNLVDMGVTGFGMAGRMLRERLLDDLAVSYYLRTLQWGALTRAWPSDFSVWQEDENSDGGYRLIKSLDNLPSNPEVEDIYDIENGLMNAPKDGPGFLNALGDFVNGMTRL 371
[Close]
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Match: A0A1Z5JNI5_FISSO (DUF1995 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JNI5_FISSO)

HSP 1 Score: 172 bits (435), Expect = 1.420e-44
Identity = 106/320 (33.12%), Postives = 160/320 (50.00%), Query Frame = 3 
Query:  501 TELPDSFEDSIARMGKGTLQAMDEGRKL--LRIDFDTSAGDETYTTLKSSLEMAKQLTKLLAEEVICGK--------------------------------------------------EGATMTLFFPDAGSAALAKYEW-GVGTE--AAEVPAGVRFCT---VKTEEPADTDVGCILLCPRNSEADFALELVRKVDERGQFL---VLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHGKRYTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDATPDFLNTVAKFVRDFGNL 1277
            TELPDS ED+  R  + +    ++   +   R+DFDTS GDETYT LKSS E  +     L   +I G                                                   EG    ++FPD G+AALA+ +W G G +  AA+VP  V F +   V+       D+     CP+ SE+D   +++++ +     L   V +NP+L++MG TG+G+AGR +R+ +I    TTYYLRTL WGA+TR++ + ++VWQ+D     GYRL+KT+   P    ++DIY+I NG + E ++  FL+ +  FV+    L
Sbjct:   41 TELPDSLEDAAVRAAEASALFAEQMGSMGRCRVDFDTSVGDETYTMLKSSTEFMQNYVSALCYSMIPGLQEQRQAEMMRVVEARAELKAMENAEEANAEREEQLVQIIAANGRDKNAKWEGPKARIYFPDEGNAALARRDWLGSGPKPGAAKVPPCVEFSSCGGVQRVNDVSNDMLVFFFCPKASESDSVEKILQRSEAESSCLKLTVFVNPSLVDMGVTGFGMAGRMLRERLIDPLQTTYYLRTLAWGALTRQYPEAFSVWQEDEGADGGYRLIKTMDRLPSNPEVEDIYDIENGAKSERSSGGFLDQLGDFVQGMTRL 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1709.3961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFG6_9PHAE8.550e-14676.84DUF1995 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LR77_ECTSI8.640e-13877.25DUF1995 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YKF2_9STRA1.230e-7651.22DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2FCL6_9STRA5.340e-5144.71Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3NLL6_9STRA5.580e-5038.38Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A4D9D446_9STRA2.450e-4940.15DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S2XVG8_9STRA7.600e-4838.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WGZ0_9STRA2.870e-4633.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2PCV2_9STRA9.620e-4533.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5JNI5_FISSO1.420e-4433.13DUF1995 domain-containing protein n=2 Tax=Fistulif... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1709contigH-paniculata_contig1709:3356..13717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.1
Seed ortholog evalue3e-112
Seed eggNOG ortholog2880.D8LR77
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1995)
EggNOG OGs28J60@1,2QRI3@2759
Ec32 ortholog descriptionDomain of unknown function DUF1995
Ec32 orthologEc-06_004070.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1822
Cds size1245
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1709.3961.1prot_H-paniculata_contig1709.3961.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1709 3898..13682 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929349.4360752-UTR-H-paniculata_contig1709:3355..38971622929349.4360752-UTR-H-paniculata_contig1709:3355..3897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1709 3356..3897 -
1691480825.620516-UTR-H-paniculata_contig1709:3355..38971691480825.620516-UTR-H-paniculata_contig1709:3355..3897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1709 3356..3897 -
1622929349.5776887-UTR-H-paniculata_contig1709:13682..137171622929349.5776887-UTR-H-paniculata_contig1709:13682..13717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1709 13683..13717 -
1691480825.688017-UTR-H-paniculata_contig1709:13682..137171691480825.688017-UTR-H-paniculata_contig1709:13682..13717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1709 13683..13717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929349.4483123-CDS-H-paniculata_contig1709:3897..41021622929349.4483123-CDS-H-paniculata_contig1709:3897..4102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 3898..4102 -
1691480825.6312091-CDS-H-paniculata_contig1709:3897..41021691480825.6312091-CDS-H-paniculata_contig1709:3897..4102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 3898..4102 -
1622929349.4707046-CDS-H-paniculata_contig1709:4421..45821622929349.4707046-CDS-H-paniculata_contig1709:4421..4582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 4422..4582 -
1691480825.6409514-CDS-H-paniculata_contig1709:4421..45821691480825.6409514-CDS-H-paniculata_contig1709:4421..4582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 4422..4582 -
1622929349.4882112-CDS-H-paniculata_contig1709:5158..52811622929349.4882112-CDS-H-paniculata_contig1709:5158..5281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 5159..5281 -
1691480825.6499197-CDS-H-paniculata_contig1709:5158..52811691480825.6499197-CDS-H-paniculata_contig1709:5158..5281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 5159..5281 -
1622929349.5142748-CDS-H-paniculata_contig1709:5622..57081622929349.5142748-CDS-H-paniculata_contig1709:5622..5708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 5623..5708 -
1691480825.6594079-CDS-H-paniculata_contig1709:5622..57081691480825.6594079-CDS-H-paniculata_contig1709:5622..5708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 5623..5708 -
1622929349.5353765-CDS-H-paniculata_contig1709:8649..87821622929349.5353765-CDS-H-paniculata_contig1709:8649..8782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 8650..8782 -
1691480825.668353-CDS-H-paniculata_contig1709:8649..87821691480825.668353-CDS-H-paniculata_contig1709:8649..8782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 8650..8782 -
1622929349.5545082-CDS-H-paniculata_contig1709:13145..136821622929349.5545082-CDS-H-paniculata_contig1709:13145..13682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 13146..13682 -
1691480825.6777754-CDS-H-paniculata_contig1709:13145..136821691480825.6777754-CDS-H-paniculata_contig1709:13145..13682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1709 13146..13682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1709.3961.1

>prot_H-paniculata_contig1709.3961.1 ID=prot_H-paniculata_contig1709.3961.1|Name=mRNA_H-paniculata_contig1709.3961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp
MNWAAQCYFPYVSTGRLYARDRPDGVSLVIPLSNDTMLRQPTLLPVVTFI
LCLPFLEPHSTVAFNLAVAPTITSSRQTTQWASSFPQHQVPSHHPLGEAH
RRIALRPLDIVGSTRIMSSSEAAAAAEIAAAEATEATGEEKPGGARVASD
LDPDVTELPDSFEDSIARMGKGTLQAMDEGRKLLRIDFDTSAGDETYTTL
KSSLEMAKQLTKLLAEEVICGKEGATMTLFFPDAGSAALAKYEWGVGTEA
AEVPAGVRFCTVKTEEPADTDVGCILLCPRNSEADFALELVRKVDERGQF
LVLINPALINMGTTGYGLAGRRIRDEVISAFYTTYYLRTLPWGAVTREHG
KRYTVWQDDSNEPTGYRLLKTVAERPVGEALDDIYNIANGLQEEDATPDF
LNTVAKFVRDFGNL*
back to top

mRNA from alignment at H-paniculata_contig1709:3356..13717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1709.3961.1 ID=mRNA_H-paniculata_contig1709.3961.1|Name=mRNA_H-paniculata_contig1709.3961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10362bp|location=Sequence derived from alignment at H-paniculata_contig1709:3356..13717- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTAGATTATTTCAGAACAGTAATTTGTTTGAACATGAACTGGGCTGCG
CAATGTTATTTTCCATACGTTTCAACGGGTAGATTGTATGCCAGAGACAG
GCCTGACGGTGTCTCCCTAGTCATACCGCTGTCGAACGACACAATGTTGA
GACAACCAACACTCCTGCCGGTGGTAACCTTTATCCTATGTCTCCCATTC
CTTGAACCCCATTCCACTGTCGCGTTCAACCTAGCAGTAGCGCCCACAAT
CACATCATCACGACAAACAACACAATGGGCCAGCAGCTTTCCACAACACC
AGGTACCGTCTCATCATCCACTGGGAGAAGCACACCGACGCATAGCCCTC
AGGCCCCTCGATATAGTCGGCAGCACTCGAATCATGTCATCGTCGGAGGC
TGCCGCAGCCGCGGAGATAGCAGCAGCGGAGGCAACGGAGGCTACTGGGG
AGGAGAAACCGGGGGGAGCCCGGGTGGCGAGCGACCTTGATCCTGATGTC
ACCGAGCTACCGGATTCATTTGAGGATTCAATTGCCCGCATGGGCAAAGG
TACGCTGCAGGCGATGGATGAGGCAAGTGAGGGAGGACTTTTGCGGTGTC
GTTGATGGGTGAGGAGTGGGAGGGATTCAACAAGGTATTTTCTATGTAAA
TTGAGGCATTGTTGGTGTTATTAGTTTTGTGCCCTGGGTGGGGGCATGCG
GCGAGTTTTGAGTGTTGCGACCACGGGATTGGGCGGAGACAGCATTCAGC
TTGGGAGGAATTAGACATGATTGGACACAGCAATGTCTCGACGACAATGC
ACATGTGACAAATGGTGTCGATCGTGAGCTTGAGATATCGCTCTGCTGGA
ATGGCATCTCCCATAGTCGAGGATTTGTTTGTATTGGCAGAGCGGCTTTT
GCCTTCCTTCTTTGAAGAAATCATTTGCCAGATGTCCACACCCACTCTCA
GAGTATACCGCCGTCAACTCCAACGTCGACGAGCGAGTAAGAGTGCTTCC
CTCACCGCGGGATAATATAAGGCAAGAACCGAATCATTGCACTCCTAGCT
TCGGACGGGAGGTTCCGATCGATAAAGTCACCCGTGTCGACAAAAACGCA
GTGGCTGTACACATACATAAGGTTACCCAAAATCGATATTTCGCTTGGGT
GATTTTTTTCTTTTTTTTTAACCCCCGGAAGGCTGAGGCAAAAAGCTTTA
CCGATTCGATTGGGTAATAAAATCTGCGTCGTCGGATGTGGTTTGAATCA
AAACGGGGTGATGCAAGTACGAAGTAAATATACTACAGAGTGATATAGTA
TTTAGCCCACTATGGACACGTTTTTCAAATTTTGAATGCGCTCTTTTCCC
CAAATTTTACCACGTAATGGTCCAGTTTTCGCGGAGTGATGGCCCAACAA
ACTACCTTATCACCCATAAAACTATATACGGCCGGAAAGCTGATGATGAC
AATGCAACGCAAAAATAATAACAAAGATCCAACAAGTTGCTGTTAATATA
GAGAGGTTTGAATTTGAGCATGTCGCCCAAAAATAGAGGACGTCACTTCA
AACACGCTCCACGACCATAGAATACAGCTACGAAGGTGAAAACAGCGCAC
AGGTGTTCCTCTTGACAGCGAATGTGGTTACCTTAGGGTTGTGGTGTATC
TCCTGTGGCGGTGAAGAACTGGAGGTCGATCAATAGGGGTCACCTGGAAT
CCAAGGCGGGGGAACACGGTTTTTTTTACCGGGGGAATCAAGTTTTTTCC
AGATCACACATCAAGTTAGCGTTTGCGGCGAGGATTTGGATGAGGAGGGG
GAGGGAGGATTAGGCAATGAAGTCAACGAGTTCGAGGCCGACTTTTTGGC
GGAAGACGGGTGTGAAGGCGAGAGTGATGAGTAAGTAGCTATTAGGATTA
GATTTCTGTAGAGTGAGGTGTGACAGTATCTGGGTACGTGAGATTTTCTC
AGCAACAGTACACGGGCAAGGACTTTTTTCTTTTCTTTTTTTTATCCCCT
GGAAGGCTAAGGCAAAAACCTCTATCCGATGCTCCCATACCGAAGTATGT
CTACATTTACTTTTACAGAACAGAGTTATTTGTTCCTCTGCGGGGTAGGC
GACGGGCAAGGACTTTGTGTTTGTCCTACAGTGCAGTAGGTGGCTAGTAG
CTGAACTCTCTGTAATTGTGCGCCATTAATTTTAGGTGGCACCGTCTGCT
TGGGCACGTCGATGTGCTTGGTAACAAGTCAACGATTACACAACTTGAAA
ACCGTTTCTTTTTCGCGTACAGGAGTGCGTGCAAACCTTTTCGAGGTGCC
GACAACATACAGCTGTCCCAAGTGCCATTACCCTCTTCATTTTGGGTCTA
TCTCTGTCACTTCTTACCACAACCTCCCGACAATATCTCATCACTGCCCC
ATTTTGCATAGTTGTACCTTGCCGATGTTGTTAATGTGGGGATCCCCCAG
TTGAAACGGCAGCTAGTGTAACTCATCTTACCTGCATTGCTTGTCTGAAT
ACAAAGAAAAAAGAATAATGGAAAACGTCGCGAAAATGGCGAAGAAATGA
GCCAAAAACCAATTTACCATACCAGTGTACAGCATAAACTTGGCCATACT
CCACGCATATCTTTGTGACACGATGACTCACTAGAATTACGTTATTTTTA
AATCGAACCTTTTAGTACATGATCTTGGTCACTATGTCGATGTGGTCACG
TTGGTTTGTTATTCTTCGCTCCTCATCTCGAATTATTGGTGAAAGTCTAG
ATTTTCGTATATTTTTATTATTGAGTTTCAGATCTCTAAATGCCTTTTTT
CCCGGTTTTTCTCGATTTTTTGGCCGATGGCCTCAGAACAGGTTTTTTGG
CCCTTGCACAGACAGGGCCTATGCTCGCGGCACTTTTCTCGTTGTAGATA
TCGAGATATGACGTTGGATCAAATACGATGTCACTCTGTAGTAGGACCGG
GTTGTTACACGGCAGGGGAGATGTTTACCTCCCTGTGCCCACAGTTAGGG
ACAAAGCACAGACCACAAAAAAATACTGTCTACAATCCGATTTTATGTTA
TCCCGTGATGCAAGAACATGTTCTACTGTTGTCAGTACATGCGGAATAAT
CCAAGAATTCGAAAGGTTGCCTTTTGATTTGCGCTTCAAATTGCAATCGA
CTTTCAACCCTCCGGATCACGAACTTCACGAAATACATTGTCATTTTATC
AAACCGCAGTGACGATTCGCGCTGTATCCGCGCGGAACCGGAAGACCACA
CACCATATACTGCATGATTGACGACGAATCCTTCTGCAAACAGGCCTTAA
CATTTTTTTACAAGCAGTGCAGCATATGAGAATATTTTCTTTTCATGAAA
CTATTTTATCAGGAGTTTTCATCTGATCGGTTAATTCGCTGACCTTACTG
ACCTTACTGACCTTGCTGGCCTTGCCGGCGGCAAGGTCGATCTGGGTCAG
CTAGCCACAATCGAACAGATGATGAGGTTCTAACCTGACCAACCAGCCAC
GGCCGGACAGACGACGTTCAAATATTGCCAAGTTGCCATCGGCAAAATCC
AACTGGGCCGACCGGTTGGCTATGGATGGTAAACCGATGTTCGTGGGCGT
AATGCTTTAGTTTTGGGGAAAGTTTGTTCTGTTTCGAAAAATAATGTTCC
GTTTCACCAAATTTGTGTTTTTGTTGGGGGAGTTTTTTTTCTGGGTGACG
GAAAGTGTCATAATTTGGGATATTTGCCAGCCAGCGGGTACCAGCGGGTA
CCAGCGGGTACCAGCGGCCAGGTCAGTCTGTCACCGGGGATCAGACACCG
CAGGCCTTGTCTTAATCCCTGATGCGTGACTTGGATCATTTAGGGTTTGT
ATTATGATTGATCGTTTTATCGTTTGTTACTGTACACGGTTTTTACGAGA
TAAATATCTGAAGTGACTGACGTGTCAAGTGTAAAAAATATGACGTGTCG
ATAGCCAACCGGCCAGATGACCATGAACGGATATGCCGGGTATGTCAACT
GCGGAATTGGTGAGAAGCCCTGGTATTATCCTCTAACCATACCATCAAGC
GTTTCATGTGTTATGGGTGTTTGCATTGCAAAGGCCAGAAAATAGTACGA
TGCCGACAACTTCACAGTACAGTACGGCAGACAGACCACCTATCGTATAC
CCCAGAATATGAGCACACCACACTACTTCCATTTCATCGTGTTCATTAGT
CCTGTACAGATCGCGAATTAAAAAATGCTATAGATAGCACAGTGAGTACA
TAGAAAAATGGGATCAAGGCGTGAAAGATGTAACCCACAGACCACAGCAC
AGCCTGCGGAATGCCTGATAGATGGAAAAAGAATCAGGCCCCTAACCCCA
CCTGAGTCAGGCCAATAGGGACCGGCTCAGCGCGCTAGGCGCTGAAAGAT
CAACAATGTTCAAAGTCGCAGGATTGCCTCTCTAACCATTTTGGCAAGGT
CCACAGCTACGGGGTTATGAAGAGCCTTGCTCTATAAGTTGGCCTGTACG
CAGACACATGGAAGAGAATGAAGCTATAAATAAACTGTCTAAACATAAGT
TGTATCATGGCGAACCCCTGTCCCCAGGTTGGCTTTATGCGGCATCATTA
ATCTCTAACAGACCTTCCCTCTAGTAGCACTGCAAATGTTTGGTCAGCAG
ATTGCGTAGTATCTGCGCGACTTTACCAGCAGATGCGTCAGATTTCGCAT
GGAGTCATCGCTTGCGCTCACACCCTGTGAGTTTGGACGAGGTTGCAAGT
GCCGCTGTGGTCGTATGTAGGGTCACGTGTTGAATTTTTCACTCGGGCAA
CGAAAATCAACCACGTTACTGGTGGCGCTTGCTTCCGAAGGTTGTCGTTA
CCGCCTACCCCGAGCTTGTCACTTTTCACACACGTATGTTGCGTTTCCTG
ATTCGCGGTGTGTGCTTCCGTCGTGGTTTGAGCAGGGACGCAAGCTATTG
AGGATTGACTTTGACACTTCGGCCGGAGACGAGACGTACACCACCCTCAA
GTCTAGCCTGGAAATGGCCAAACAGTTGACGAAGTTGCTCGCAGAGGAGG
TCATATGTGGCAAGGAAGGTACAATAAAAGCTGGCGGGTAAGCTGTGTAG
AGAGCTGGTGTTCGCCGTTCTGTAAAACCCTATATGGGTCAAGCTGCCTA
ACTGCCTTTGTCTTTGAAATTATTTTATTGTGCACTCTCATGTCGAACAA
ATCTGGTACTTATTATGTTACGCCACGCCAGGTACCGTAATAACTGTTAT
GGTGCATGCACGCTTAGTACTTATCATACTGTGACGCCTACATTTCATTG
TGGCAACCTACCCCTACCTCTTTTAGTTTTGTCCCGGCGTGGTCGTTTTC
ATACCTATTTGAACGTCAGACCCATGGTCAGGCTAAGACATCGAGGTTCT
GAAATCCCCGGCACCGACCTGCTAACCTCAACTTAGCGCCGAATCAGTGG
CTGCAGTGCCCCCTATTTTCGGAGTACTTGAACTACCTTCGGCGGCAAGC
CGCCGAGAGCCAAAATAATCTTCCGATCTTCTCGCCGGAAAACCCAAGAC
TTCAGCGCACCGCCGCAACGCCGCATCGCCACACCGATTTGAGACTATGC
TGAACAGTATTGACATCTGTTGTGTCGATCAAAGCAGAGTGGTTCCTTCG
TAGGGTACCACGGTGGTTTCTAATGTGGCACCTAGACATCAACATAAGCT
CGAGCTATGTTGGCTCTAATGCGTGCGTTCGGGCAGCGTTGTACAGCTAT
TTTTGCTTGCAAAAAAATCAATGTAAGCGTTTGAGCATCATGCGGTTTGG
TGTTATAATCTCACGCGTTCGAGCCACGTGTACTATATATCCTATACTCC
CTCCGTCACATAAGTCTGCAACGTTAAGGGTGTAACTTGTTGCCATGACC
TCCGAATCAAAAACGAATTTTTGCGTCGGATTCCTTGGTGTTTTTCAGGT
TAATTTTATTCTCCGCAGCTTTCCTCGTTCGCATCAATCCACCATTGTGC
TGCCGCATCAAAAGCCTCTCCGTCGAATTTTGACCAATTTCGGCACACTT
CCGGTACGCTGCCTTTTCTTGGTTTCGGTGTGCTGCCCCTCGAAATCGAT
ACCTCGTAGCGCCTTCAAGACCTGATTGTACCACTCAAAGAGGCTCTGCC
ACACCCTCTCTAAGTTTGCCGTGCCGTACTCATCGTACATGCTCTTTTCC
CCCTCCACCAGGCCGTCTATCGTACCGTAACGCTCCCTCCAAACCCTACT
TTTCACATATGCAAAGAACCCCAAATCGTTGATGTTGAGATCTGGTGACT
GCGTATGAGCTACAAGATTGACGTTCCACCCCCCATCCATCCAGAGTTCG
TTGAGCTTCCGCGGCATGCCTTTCCCCGTGTGGGGGGTCGCTCCGTCCTG
CTCCGCGACCACTTCCTCACCCTCCAACCGCGGCATCTTTTCCTTCAATG
CTTGGAGAATTAGTTAGAATCACTTTTCGTCGATGTGAATTGTTTGAAAG
CCGCTCCTGAAAGTGATGCGGTTCCTTGCTGCTTGGTCCAGGGTGAAGTT
TACCCGGTTATCTCGGTGCGTGAGCGACAGAGATGAGGTAATGTGCCATT
TTACCCTCGTGGCGCCCATCTCTTCGAGCCATCGCTTAAGCTTTGAGCTA
CCGGCTACGAGACCAAGTTCGATTAGCTTGGCGTTGACCCTTCGAATCCT
GGCGTACGTTATCGGTGTGAAGTCCGACGGCCGTCCACTTCGTGACGCTG
ACCTCAGCGAAAGGGTGTTGCTATGGTCCAGTTGTTTTCGTACGTGCGCT
CGAAGTTGTCTGGGATATTGGTCGCCAAGTACAAACCGCTCCCCCAACTC
GGGCCAATGCCTATCGGAAGCTGTTACTTACCGGGAGGTAGCTCTAAAGC
GTACCCTACGGCCAACGCGTTTCGACCTTCCTCGCTCAGCTCGCAATTTT
TACCCCAGCCTGATGGACTCCGGGCAAAAGATGCCGGACTCGCCGGAGTG
GGAATGTTGGTTGCGAAACTCGCACCGCAGACGGTCTAGAGGCTGCAATA
GAGTCGTACAGCTCTTGGTAAAGTGCTGAGATGTTGTGTGGCGATAGGGG
GGGGTGCTTTATCCACCGCCGGGCGCAGCGCAGCCACCTTAAAATGGAGC
CGAAAAGTGTTTTTTTAGTTCCCCTTCTCGCGAATTTTTCGAAACTATTT
CGGAACAGTATGCGAGAACGAAATAATTATCCTTCAATATTACGTCCATA
GGTTCAATTCAAGCCATACATGACCGAAAACCTCTTCGTATTTGTAGAGA
AGTAGCCAATACAAGAATGAGAAATCATAACGTCGCAGACTCATGGGACG
GAGGGAGTATATAGTCATCTTACTCGTGGCATGAATCCACCTATTTCGTT
TCTGTACTCTTCAAGTTTCGCCATGTCCTTCCTGACGTCACCCAATCCGT
TTTTCGCATATTTTCCTGTCCAATATTTTCGTTAGTATGCACCCTCTGCG
CCTCACGCCCCCCGCCGTGCTCACTTTCACCCCTCCTACACCTTCCTTTG
CCTCGGCTGTATCCCCTGCGCGTTGGCATCTACCGCTGATTTAGAGGAAT
CTTGGCATGCATCATCTCTATTGTTCCTTATATGTTGTATATATTTCGTT
TTGCTTGCCCAGTGGCCACAACTGCCTCTGCTCCCCTCTCCCCCCCCCCC
CGCGGGCGCTTGTCTCAGTTTACGACACGAAGCCGACGGCGTTAGCTGTG
TCTTTCCCAATAGCGAAAGAAACAAAATAACACAGAGGTGATACTTTTCT
TTTTGCACCTATGCGATGGTTCGCATGCTATAATGTTTGCAGGTTCACCT
TCCACCTCTTCTGGTGTGTGGATGTTACATGGGTTTGACCTCCTACTAAA
TCTCTCCACATGTCTGTACGACCATATCCCCACTCGCGACAGCCACCCTT
CTGACTTGATGCGAACACCACAGTCCTTACACTTTTTGTACAAAACGTGT
TTTTTCCAGGAGCTACGATGACCCTATTTTTCCCCGACGCGGGGTCGGCG
GCGTTGGCGAAGTACGAGTGGGGAGTGGGCACAGAGGCGGCCGAGGTGAA
GGGGTGTCGTTTTTGGTCGACAGCATCCAATTCAACACTCGTTTCTTAGA
TCGCATCTCGTATCCATAGGGCCGTAGTGGGACGGAGACAAGTCCTGTCA
GACATGTATCTCTTCTTGGTTCTCTTGAAAAGCGTCGTGAGGAATCTAGG
GGACATCGATTCAGACCCACCCCCTACAGCAAGATCGTGTTGGCTTCAGC
GCACACTTGACTCTGTTGGAAAACATTTGTGACTCGTTGCATGCAGAAGG
CAGCAGCGAGATATTTTCGTCTTTTCAGAGTGTAGCAACGAAGGGCATGT
ACTGACCGTTATTCTCGTATCGGCTGTGCGAACCAGGTGCCTGCAGGGGT
AAGATTTTGCACGGTAAAAACAGAAGAACCGGCGGATACAGATGTGGGGT
GCATCTTGCTATGTCCACGTAACTCTGAGGCGGATTTTGCGCTGGAGCTC
GTGCGGAAGGTGCGATAAATGTGTAAGCGGTGACAAAGCAGCGCAATCGA
TAGCGATCGTGCGATTTTATGTTCTGATGCCACGAAAATATCCTTGGACT
GGCGATTTTGGCGCTCGCCAATGTTGTATTTTTGCCGTTGCATAATCTTT
GCACACTGGGTTCGCTAACTGGTTCATATGTTTGTATGTCTTGGATGACT
CATACATAACCGTAATTTATTCCATGTTGTGGTTTGTGTACGGTGGTACG
CCTAGTCGGTTATGTGCAGATTTTTCTAGTCTCCCGTGTAGTAGACGTGT
GATGTTGTTTCTACAAGGCGGCAGGCACGCCAGCGCAGTCTATCGATGTT
TCCATCCGCAGTATGTGGAAGCGCGATGTACGGCGTAGAAATTCCGTGCG
TGGTACATGAGGGATTCATTAACCAAGAGGATATTGGAGGCAAGGCATAG
GGATATAGCTTAGAATTCCCTTCGAATATTCGTGTAAAGAAAATGTCTAT
TACGGTCACAGCCTCTGATAATTCGCTCTGGTTGTGCTGCGTGCATGTGT
CGCTGGCGATAATCCCTTTCTCCTCTCCACCCCAGGTGGACGAACGCGGA
CAGTTTTTGGTGCTTATCAACCCAGCCTTGATTAACATGGGCACCACGGG
GTATGGGTTGGCGGGACGTCGAATTCGAGACGAGGTCATCTCCGCGTTCT
ACACAACGTACTACCTCCGCACGCTGCCTTGGGGGGCGGTGACGAGGTGA
GTAACTTCAGGGATGAGGTTCGTGCGAACTGCGTGAATAATGGTGACAGG
CGATAGATCTCGGTGGATGAAGTCAGCCGTTGTTATTCTTGGGAATATGT
GTTATTCCGAGGCCTTTTAGATGTCACCGTAGTGGTGTAGCTTCATGAAG
CAGTACCAGATCAATCGTTCACACGGCATCAGGGGATGCGGTTTCGATGC
AATAGGAACGCCGGTAGCAATCTGTGGCGTATTAGCGCGGCTGACCCGGG
GGTCTGAGTTAGCTGCTCCCATTTCCTCTTCTGCCTGTTCGCTCAACTCT
GTCGGTGTACAACAGAGAGCACGGGAAAAGGTATACTGTGTGGCAGGACG
ACAGCAATGAGCCGACCGGATATCGCCTCCTCAAGACGGTAGCAGAACGC
CCAGTGGGCGAGGCATTGGACGACATTTACAATATCGCGAACGGATTACA
AGAAGAGGACGCAACGCCCGATTTTCTCAACACAGTGGCTAAATTCGTGC
GCGATTTCGGAAACCTGTGAACGAGAAACGAAAAAAAAAACGACGCAATT
TCATATTTTGCATATTTGGTACTTGCTGGGCGTGATTGAGAGGCAACATC
TGCTTGTGGGAGTTAACTTCAGAAGAAATGCTCAGGTGTAAGATAAGGCC
TGAAAATGTCGACGTGTTTTGAGGATGAAAGACTGATTTAACCATTTATT
ACTCCCTCCGTCCCATAAGTCTGCGAAATTAACGTTGTAACTTGTTGCCA
TGACTTGCGAATCAAAAACGGATTTTTGCGTCGCACTACTTGGTGCTTTC
CACGTTAATTTTATTCTTATACCCAAGAATGAAGCGCTAGCTCATGGGCG
GTATCGTCATCGTCACAACGAGAGACTTTCTCTACGAAAAACAGATGTTC
GTACATGATTGTTGGAAATAAGCGTTTCGAATAACCCACGAAGTTTACCC
CCGGTAGCCTAAAGATACAATGTAGTTGGAATGATACGCATCAGTTGAGT
ATTTTGCAGTCACGCACTTAGCAGGGGACAGGGTACCACAGTAACAAGTT
CTTGGATATAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1709:3356..13717-

>mRNA_H-paniculata_contig1709.3961.1 ID=mRNA_H-paniculata_contig1709.3961.1|Name=mRNA_H-paniculata_contig1709.3961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig1709:3356..13717- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTGGGCTGCGCAATGTTATTTTCCATACGTTTCAACGGGTAGATT
GTATGCCAGAGACAGGCCTGACGGTGTCTCCCTAGTCATACCGCTGTCGA
ACGACACAATGTTGAGACAACCAACACTCCTGCCGGTGGTAACCTTTATC
CTATGTCTCCCATTCCTTGAACCCCATTCCACTGTCGCGTTCAACCTAGC
AGTAGCGCCCACAATCACATCATCACGACAAACAACACAATGGGCCAGCA
GCTTTCCACAACACCAGGTACCGTCTCATCATCCACTGGGAGAAGCACAC
CGACGCATAGCCCTCAGGCCCCTCGATATAGTCGGCAGCACTCGAATCAT
GTCATCGTCGGAGGCTGCCGCAGCCGCGGAGATAGCAGCAGCGGAGGCAA
CGGAGGCTACTGGGGAGGAGAAACCGGGGGGAGCCCGGGTGGCGAGCGAC
CTTGATCCTGATGTCACCGAGCTACCGGATTCATTTGAGGATTCAATTGC
CCGCATGGGCAAAGGTACGCTGCAGGCGATGGATGAGATGAACTGGGCTG
CGCAATGTTATTTTCCATACGTTTCAACGGGTAGATTGTATGCCAGAGAC
AGGCCTGACGGTGTCTCCCTAGTCATACCGCTGTCGAACGACACAATGTT
GAGACAACCAACACTCCTGCCGGTGGTAACCTTTATCCTATGTCTCCCAT
TCCTTGAACCCCATTCCACTGTCGCGTTCAACCTAGCAGTAGCGCCCACA
ATCACATCATCACGACAAACAACACAATGGGCCAGCAGCTTTCCACAACA
CCAGGTACCGTCTCATCATCCACTGGGAGAAGCACACCGACGCATAGCCC
TCAGGCCCCTCGATATAGTCGGCAGCACTCGAATCATGTCATCGTCGGAG
GCTGCCGCAGCCGCGGAGATAGCAGCAGCGGAGGCAACGGAGGCTACTGG
GGAGGAGAAACCGGGGGGAGCCCGGGTGGCGAGCGACCTTGATCCTGATG
TCACCGAGCTACCGGATTCATTTGAGGATTCAATTGCCCGCATGGGCAAA
GGTACGCTGCAGGCGATGGATGAGGGACGCAAGCTATTGAGGATTGACTT
TGACACTTCGGCCGGAGACGAGACGTACACCACCCTCAAGTCTAGCCTGG
AAATGGCCAAACAGTTGACGAAGTTGCTCGCAGAGGAGGTCATATGTGGC
AAGGAAGGGACGCAAGCTATTGAGGATTGACTTTGACACTTCGGCCGGAG
ACGAGACGTACACCACCCTCAAGTCTAGCCTGGAAATGGCCAAACAGTTG
ACGAAGTTGCTCGCAGAGGAGGTCATATGTGGCAAGGAAGGAGCTACGAT
GACCCTATTTTTCCCCGACGCGGGGTCGGCGGCGTTGGCGAAGTACGAGT
GGGGAGTGGGCACAGAGGCGGCCGAGGAGCTACGATGACCCTATTTTTCC
CCGACGCGGGGTCGGCGGCGTTGGCGAAGTACGAGTGGGGAGTGGGCACA
GAGGCGGCCGAGGTGCCTGCAGGGGTAAGATTTTGCACGGTAAAAACAGA
AGAACCGGCGGATACAGATGTGGGGTGCATCTTGCTATGTCCACGTAACT
CTGAGGCGGATTTTGCGCTGGAGCTCGTGCGGAAGGTGCCTGCAGGGGTA
AGATTTTGCACGGTAAAAACAGAAGAACCGGCGGATACAGATGTGGGGTG
CATCTTGCTATGTCCACGTAACTCTGAGGCGGATTTTGCGCTGGAGCTCG
TGCGGAAGGTGGACGAACGCGGACAGTTTTTGGTGCTTATCAACCCAGCC
TTGATTAACATGGGCACCACGGGGTATGGGTTGGCGGGACGTCGAATTCG
AGACGAGGTCATCTCCGCGTTCTACACAACGTACTACCTCCGCACGCTGC
CTTGGGGGGCGGTGACGAGGTGGACGAACGCGGACAGTTTTTGGTGCTTA
TCAACCCAGCCTTGATTAACATGGGCACCACGGGGTATGGGTTGGCGGGA
CGTCGAATTCGAGACGAGGTCATCTCCGCGTTCTACACAACGTACTACCT
CCGCACGCTGCCTTGGGGGGCGGTGACGAGAGAGCACGGGAAAAGGTATA
CTGTGTGGCAGGACGACAGCAATGAGCCGACCGGATATCGCCTCCTCAAG
ACGGTAGCAGAACGCCCAGTGGGCGAGGCATTGGACGACATTTACAATAT
CGCGAACGGATTACAAGAAGAGGACGCAACGCCCGATTTTCTCAACACAG
TGGCTAAATTCGTGCGCGATTTCGGAAACCTGTGAAGAGCACGGGAAAAG
GTATACTGTGTGGCAGGACGACAGCAATGAGCCGACCGGATATCGCCTCC
TCAAGACGGTAGCAGAACGCCCAGTGGGCGAGGCATTGGACGACATTTAC
AATATCGCGAACGGATTACAAGAAGAGGACGCAACGCCCGATTTTCTCAA
CACAGTGGCTAAATTCGTGCGCGATTTCGGAAACCTGTGA
back to top