mRNA_H-paniculata_contig17086.3959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17086.3959.1
Unique NamemRNA_H-paniculata_contig17086.3959.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17086.3959.1 vs. uniprot
Match: A0A6H5KGB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB1_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 1.980e-84
Identity = 154/270 (57.04%), Postives = 205/270 (75.93%), Query Frame = 1 
Query:    1 AKEAVGVELEAAMKNIEEAREEFVKKEQDFQIQLDRFMEYPKVAEAMAEKLDKCLKSSRREHNLLELERKDFRRQLQIFVRWETENSVLRKKIKLQNIQALVLRRQLAKAEATSAGSCATRKAVLGGAVEKLQKAAVAAKHQANKYRELAGSRSVRVMELEAEIKALKASVQRMRDLQEVQANDAYEMEIGRLARVSPNMVDFQDKSGLGKDDMQASLAQLKVLREKENHKDALIKLVKERNDFELRIKDLQARNSWLETQVLGSSSAFR 810
            AK  +  EL+A     +E  +    KE++FQ QLDRFMEYPK AE MAE+L++C K++RRE NL+ LERK+FRRQL +F +W+TENS LR+K + Q +Q + LRRQLA  E+  AGS +TRKAV+GG V++LQ+A  AAKHQA+KYRELAG+R V+  +L+AEI +LKA+++ +R   E  A+D+YE EI RLARV+P ++D Q KSGL K+DM+AS+ QLK+LREKE  KDALI L +ER++F L IKDL+ARNSWLE Q+L +  A R
Sbjct:   23 AKSILTQELQATAARNKELCQTAKDKEKEFQAQLDRFMEYPKAAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREKARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQAHKYRELAGARGVQAAQLKAEISSLKATIKTLRLKLEPPAHDSYETEIARLARVNPEVLDIQQKSGLSKEDMEASMVQLKLLREKEEQKDALIALARERDEFALCIKDLRARNSWLEKQMLKTPDALR 292
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BLAST of mRNA_H-paniculata_contig17086.3959.1 vs. uniprot
Match: D8LEA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA2_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 8.080e-82
Identity = 144/240 (60.00%), Postives = 189/240 (78.75%), Query Frame = 1 
Query:   91 QIQLDRFMEYPKVAEAMAEKLDKCLKSSRREHNLLELERKDFRRQLQIFVRWETENSVLRKKIKLQNIQALVLRRQLAKAEATSAGSCATRKAVLGGAVEKLQKAAVAAKHQANKYRELAGSRSVRVMELEAEIKALKASVQRMRDLQEVQANDAYEMEIGRLARVSPNMVDFQDKSGLGKDDMQASLAQLKVLREKENHKDALIKLVKERNDFELRIKDLQARNSWLETQVLGSSSAFR 810
            Q QLDRFMEYPK AE MAE+L++C K++RRE NL+ LERK+FRRQL +F +W+TENS LR+K + Q +Q + LRRQLA  E+  AGS +TRKAV+GG V++LQ+A  AAKHQ +KYRELAG+R V+  +++ EI +LKA+++ +R   E  A+D+YE EI RLARV+P ++D Q KSGL K+DM+AS+AQLK+LREKE  KDALI L +ER++F L IKDL+ARNSWLE QVL +  A R
Sbjct:   88 QAQLDRFMEYPKAAERMAEELERCKKTARREKNLMVLERKEFRRQLHMFQKWQTENSNLREKARAQEMQVVALRRQLAVTESGLAGSASTRKAVIGGTVDRLQRAETAAKHQVHKYRELAGARGVQAAQMKTEISSLKATIKTLRLKLEPPAHDSYETEIARLARVNPEVLDIQQKSGLSKEDMEASMAQLKLLREKEEQKDALIALARERDEFALCIKDLRARNSWLEKQVLKTPDALR 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17086.3959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGB1_9PHAE1.980e-8457.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEA2_ECTSI8.080e-8260.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17086contigH-paniculata_contig17086:98..3576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001480.1
Exons7
Model size813
Cds size813
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929349.204481-CDS-H-paniculata_contig17086:97..2251622929349.204481-CDS-H-paniculata_contig17086:97..225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 98..225 -
1691480825.518991-CDS-H-paniculata_contig17086:97..2251691480825.518991-CDS-H-paniculata_contig17086:97..225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 98..225 -
1622929349.221077-CDS-H-paniculata_contig17086:832..9871622929349.221077-CDS-H-paniculata_contig17086:832..987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 833..987 -
1691480825.5273309-CDS-H-paniculata_contig17086:832..9871691480825.5273309-CDS-H-paniculata_contig17086:832..987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 833..987 -
1622929349.2358074-CDS-H-paniculata_contig17086:1330..14341622929349.2358074-CDS-H-paniculata_contig17086:1330..1434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 1331..1434 -
1691480825.5346985-CDS-H-paniculata_contig17086:1330..14341691480825.5346985-CDS-H-paniculata_contig17086:1330..1434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 1331..1434 -
1622929349.2515593-CDS-H-paniculata_contig17086:1648..17771622929349.2515593-CDS-H-paniculata_contig17086:1648..1777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 1649..1777 -
1691480825.5424094-CDS-H-paniculata_contig17086:1648..17771691480825.5424094-CDS-H-paniculata_contig17086:1648..1777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 1649..1777 -
1622929349.2619328-CDS-H-paniculata_contig17086:2242..23811622929349.2619328-CDS-H-paniculata_contig17086:2242..2381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 2243..2381 -
1691480825.5501282-CDS-H-paniculata_contig17086:2242..23811691480825.5501282-CDS-H-paniculata_contig17086:2242..2381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 2243..2381 -
1622929349.275965-CDS-H-paniculata_contig17086:2590..26551622929349.275965-CDS-H-paniculata_contig17086:2590..2655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 2591..2655 -
1691480825.557714-CDS-H-paniculata_contig17086:2590..26551691480825.557714-CDS-H-paniculata_contig17086:2590..2655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 2591..2655 -
1622929349.2867043-CDS-H-paniculata_contig17086:3483..35761622929349.2867043-CDS-H-paniculata_contig17086:3483..3576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 3484..3576 -
1691480825.565212-CDS-H-paniculata_contig17086:3483..35761691480825.565212-CDS-H-paniculata_contig17086:3483..3576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17086 3484..3576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17086.3959.1prot_H-paniculata_contig17086.3959.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17086 98..3576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17086.3959.1

>prot_H-paniculata_contig17086.3959.1 ID=prot_H-paniculata_contig17086.3959.1|Name=mRNA_H-paniculata_contig17086.3959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
AKEAVGVELEAAMKNIEEAREEFVKKEQDFQIQLDRFMEYPKVAEAMAEK
LDKCLKSSRREHNLLELERKDFRRQLQIFVRWETENSVLRKKIKLQNIQA
LVLRRQLAKAEATSAGSCATRKAVLGGAVEKLQKAAVAAKHQANKYRELA
GSRSVRVMELEAEIKALKASVQRMRDLQEVQANDAYEMEIGRLARVSPNM
VDFQDKSGLGKDDMQASLAQLKVLREKENHKDALIKLVKERNDFELRIKD
LQARNSWLETQVLGSSSAFR*
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mRNA from alignment at H-paniculata_contig17086:98..3576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17086.3959.1 ID=mRNA_H-paniculata_contig17086.3959.1|Name=mRNA_H-paniculata_contig17086.3959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3479bp|location=Sequence derived from alignment at H-paniculata_contig17086:98..3576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAAAGAGGCCGTAGGCGTTGAACTGGAGGCCGCTATGAAGAACATAGA
GGAGGCGCGCGAGGAATTTGTGAAGAAAGAGCAGGATTTTCAGGTGCAAA
TATTATCTTCAGTGGCGAGTTGTGTTGACTTTAGTGCGGAATCATCTCGG
AACATACGGTTTTTTGGCCGTTGTTTTTGAGTGCAGCGGGTTAAATTTTA
CATCTTGATCATATACAAGTTGCGTTGCCGATGCTTTGGACATGGTGCAT
TGTTGGTGCCAATAGTTAGGTTCGAGCTCGAACTATTTCGGCGTCTAGCT
AAAACAATGGAGGCTGTCATCGTGTTCTCTCCCCCATTCAGTTGAAACGG
CTCCGATTTGTTAGAGGATCTCTCCGAATCTCATACGAACCAAATGTTCT
GCGTTGATTTTTGATCCCCGCGACGGCAACAACACTCACCATTTAGCACT
CGCCGCACTTCAGTCACGCCGCGGGAAGCCTTCCTTTCATCGACGAACGT
TCGTGTAAGAATAAATATCACCAATCGTAAACGTTGCACGCCAAGAACAC
TATGTTCCCGCCAGCAATCTTTCACCCCCCAGACAAATAGGAATACTTGC
GAATGGTTTTCACACAAAACTGAAAGTATTCGCTGAGGTTCAGAATGAGC
TCATGTATTCTATGTGCCCCGGACCATCCACGACTGCTAATAATACCCGT
AAATCCGATGGACAGGGGTGGATATTTTTTTTATGTCCGCTCATTCTGAA
ACTCAGGCAAATAAGTTCAGTTGTTTTTGAAACCATTTGCAAGTAATCGT
ATTTGTCCGGGGGGTGCAATCTTTGATCTCGATACGACCTAGGGCTCCCA
AGGAGATATTTTTGGGGAACCCTTGACGCGATTCCGTTCTGTTAATTCTG
TGGAGATCGATTTTTACGCAGATTCAGCTAGACCGGTTCATGGAGTACCC
GAAGGTTGCCGAAGCTATGGCCGAGAAGCTAGACAAGTGAGAGGCCTAGG
GAACTTCATATCGATGTCATTGTACGGGGATCACGTGAGCATGAACCCTT
AGGCTTTACCTGTATATTTCTCTAGAGCTTGGAGATGATGTCCCATTCTG
TCCATTGTAAACATGGTATCATGTGAAGAATGTTTCATACTACAGAAAAC
GATAATGGCATCGTATCACTTTTTTAATGCTTTTCCATCGACAAGATGCC
TAAAATCCTCTCGGCGAGAGCACAACCTCCTGGAACTGGAGCGGAAAGAC
TTCCGAAGGCAGCTTCAGATATTCGTGCGGTGGGAGACGGAAAACAGCGT
TCTGAGGAAGAAAATAAAACTGCAGAACATACAGGTGCCAACATCGCCAG
AAATTCTTGTGTTGTACCCAGTAAACCAAGTTAGGGCCCGGGATAGGAGT
TCAGAATCACCTCGGTTACACATAATCACTGGGAAACCCTGATACATTCC
TTCCTCTCTAACGTTCGTTATCTCCTGTGTTGCCTGAAGAACGGGAAAGT
GAGTTTGGAAATTTGATTCATTCTGCCTGCGTACGCTTGACCGAGCAACT
CGACTGGAACTGTCGACGTGGGTGTTTCGGCACGTGATATAATTGTGAAC
GCCGTAAGGTTACGCTAGGTGCATGCAGTAGCGCCATAGGCTACTGCTTA
CATTGCTACAATAGACTCTCAAACTGAGTTCCCATTGTAAACCCCGGACC
GTGATGCTAACCCTAATGCTAACTTCGACATAACCCGCAGTCCTTCCTGT
TGCCAGCCCCGACGTTTCACAACACCTGCAAACGAATGCCGCACTGAAGG
CTTTAGTACTTCGGCGCCAGCTCGCCAAGGCTGAAGCAACGTCTGCGGGG
AGCTGTGCGACTAGGAAAGCGGTTCTTGGCGGAGCCGTGGAAAAATTGCA
GAAGGCTGCCGTTGCAGCCAAACACCAGGTGCTTGCACTTATCTTGACTT
TGTTAAGGTACTATGGTGTTGATACATAAATACTCCGGAGAGGTTTTAGA
TGCATGCTTCGCATCTTCATAGAGTATAGTCTGTGGCTTTGATGCAGTGC
GTTGTCTTGACCAACGCATTCACGTTGTTGGGTTGCAGCTAGAGTGGGAT
GTATTGTCTACGATATTCACTACCGCGATGAACAACGGTCAGGCAAACAA
GTACCGAGAGTTGGCGGGATCGAGGAGCGTGAGAGTAATGGAGCTGGAAG
CTGAGATCAAAGCGCTGAAGGCTTCTGTTCAGAGGATGCGCGATTTGTGA
GTATATCGCCGCTTCACGCATTCGCCCAGGACGGGGATTGATCACTTTCC
ATTTATTGCGAATCGATCTTGATATCCCGAAAATTGGTGTTACATACATT
CTCGCCACATATTACCTTTCCCATTGGACTCTACCTCACTCCTGTTCCAT
CTACGCTCCGAAGGATGTATCAAAGAGAGAACAAGGGGGGGTCGGAAAGT
AGAAAACCGAGCATGGACGCAAAACATAGTAAAACGATCGCAACGAACCA
ATTGGTAAGGGGGAAGATCGTCAACCACCTTGTAACCGTCCCATTAAACT
TGTTCCTTCCGTTTTTACCTCACGATATCAACAACCAAGACAAGAAGTTC
AGGCAAACGACGCGTACGAGATGGAGATCGGCCGACTCGCCCGGGTCAGC
CCCAACATGGTCGACTTTCAAGACAAGTCGGGCTTGGGGAAAGACGACAT
GCAAGCGAGCCTGGCGCAGCTCAAGGTCTTGCGAGAGAAGGAAAGTGCGC
AGAATTGTTCCGACGATACATTAAACGCTGTTGATGGCAGCAGCAGCAGC
AGCAGCAGTGGCAGTGGCAGGGTTCGAAGTACGGTCGGAAGTGACAATAA
ACAATCATCGTGCGCATGATAATTTGATGTCTAACGAGCGCGTTTTAATG
GCCTCTTTGCGGTGGTTACCAACACGATAATGGTCATGGTTTGATTTTTC
CCTTGCAGGGTATACCCATCGTGATGTCTAGATACGTTACGAGGGAAGTA
CTCTACTATCGCGGTCGACACCCTGCGGCAAACCGTAGTCGAAAGGTCAC
TTGCTTACTCGGTGCGATTTCTGAGCAACTACAAGCAGCTTGTGGACATC
AGCTGCCTCCCAGCGGTAGACACCAACTAAATTTTCACTTTCCGAGAGGA
GGGTACGCCGGATTAATTCCTTGGAACCTACTATTTCGACCAAGCCCTAC
ATGCTCCCGCTCGACCGACAATTTTGTGGGAACTAAAATGGGGCGTAAGT
TACTTGAAAGGAATACACGATCATGCAGTAAGCAACTTGTTCGACGTTTA
CGCGTGCTGCCGTCGTACCACCCCCCGCAAATGCTTCGACTGAGCAGGAA
GATCACAAAGACGCGCTAATAAAACTGGTCAAAGAGCGGAATGACTTCGA
GTTGCGCATAAAGGACCTACAAGCACGAAACTCCTGGCTAGAAACGCAGG
TGTTGGGCTCCTCCAGCGCATTCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17086:98..3576-

>mRNA_H-paniculata_contig17086.3959.1 ID=mRNA_H-paniculata_contig17086.3959.1|Name=mRNA_H-paniculata_contig17086.3959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig17086:98..3576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAAAGAGGCCGTAGGCGTTGAACTGGAGGCCGCTATGAAGAACATAGA
GGAGGCGCGCGAGGAATTTGTGAAGAAAGAGCAGGATTTTCAGGCTAAAG
AGGCCGTAGGCGTTGAACTGGAGGCCGCTATGAAGAACATAGAGGAGGCG
CGCGAGGAATTTGTGAAGAAAGAGCAGGATTTTCAGATTCAGCTAGACCG
GTTCATGGAGTACCCGAAGGTTGCCGAAGCTATGGCCGAGAAGCTAGACA
AATTCAGCTAGACCGGTTCATGGAGTACCCGAAGGTTGCCGAAGCTATGG
CCGAGAAGCTAGACAAATGCCTAAAATCCTCTCGGCGAGAGCACAACCTC
CTGGAACTGGAGCGGAAAGACTTCCGAAGGCAGCTTCAGATATTCGTGCG
GTGGGAGACGGAAAACAGCGTTCTGAGGAAGAAAATAAAACTGCAGAACA
TACAGATGCCTAAAATCCTCTCGGCGAGAGCACAACCTCCTGGAACTGGA
GCGGAAAGACTTCCGAAGGCAGCTTCAGATATTCGTGCGGTGGGAGACGG
AAAACAGCGTTCTGAGGAAGAAAATAAAACTGCAGAACATACAGGCTTTA
GTACTTCGGCGCCAGCTCGCCAAGGCTGAAGCAACGTCTGCGGGGAGCTG
TGCGACTAGGAAAGCGGTTCTTGGCGGAGCCGTGGAAAAATTGCAGAAGG
CTGCCGTTGCAGCCAAACACCAGGCTTTAGTACTTCGGCGCCAGCTCGCC
AAGGCTGAAGCAACGTCTGCGGGGAGCTGTGCGACTAGGAAAGCGGTTCT
TGGCGGAGCCGTGGAAAAATTGCAGAAGGCTGCCGTTGCAGCCAAACACC
AGGCAAACAAGTACCGAGAGTTGGCGGGATCGAGGAGCGTGAGAGTAATG
GAGCTGGAAGCTGAGATCAAAGCGCTGAAGGCTTCTGTTCAGAGGATGCG
CGATTTGCAAACAAGTACCGAGAGTTGGCGGGATCGAGGAGCGTGAGAGT
AATGGAGCTGGAAGCTGAGATCAAAGCGCTGAAGGCTTCTGTTCAGAGGA
TGCGCGATTTACAAGAAGTTCAGGCAAACGACGCGTACGAGATGGAGATC
GGCCGACTCGCCCGGGTCAGCCCCAACATGGTCGACTTTCAAGACAAGTC
GGGCTTGGGGAAAGACGACATGCAAGCGAGCCTGGCGCAGCTCAAGGTCT
TGCGAGAGAAGGAAAACAAGAAGTTCAGGCAAACGACGCGTACGAGATGG
AGATCGGCCGACTCGCCCGGGTCAGCCCCAACATGGTCGACTTTCAAGAC
AAGTCGGGCTTGGGGAAAGACGACATGCAAGCGAGCCTGGCGCAGCTCAA
GGTCTTGCGAGAGAAGGAAAATCACAAAGACGCGCTAATAAAACTGGTCA
AAGAGCGGAATGACTTCGAGTTGCGCATAAAGGACCTACAAGCACGAAAC
TCCTGGCTAGAAACGCAGGTGTTGGGCTCCTCCAGCGCATTCAGGTAAAT
CACAAAGACGCGCTAATAAAACTGGTCAAAGAGCGGAATGACTTCGAGTT
GCGCATAAAGGACCTACAAGCACGAAACTCCTGGCTAGAAACGCAGGTGT
TGGGCTCCTCCAGCGCATTCAGGTAA
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