mRNA_H-paniculata_contig1707.3956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1707.3956.1
Unique NamemRNA_H-paniculata_contig1707.3956.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: D8LIF0_ECTSI (NAD(+) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIF0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.130e-21
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMV 138
            GSSPYLTNLECYCDE+HLTTVQADGLIIATPTGSTAYSMSAGGSMV
Sbjct:  409 GSSPYLTNLECYCDEEHLTTVQADGLIIATPTGSTAYSMSAGGSMV 454
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BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: A0A7S1BK34_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BK34_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.610e-20
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDVYALYIT 168
            GSS YL NLEC+CD  HLTTVQADGLI ATPTGSTAYSMSAGGS+V   V A+ +T
Sbjct:   72 GSSAYLANLECFCDNVHLTTVQADGLIFATPTGSTAYSMSAGGSVVHPSVPAILVT 127
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BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: A0A7S0BNN1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNN1_9RHOD)

HSP 1 Score: 89.0 bits (219), Expect = 9.650e-20
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDVYALYIT 168
            GSSPYL+NL+C+CDE+++TTVQADG+I++TPTGSTAYSMSAGGSMV   V A+  T
Sbjct:  134 GSSPYLSNLDCFCDEKYITTVQADGIIMSTPTGSTAYSMSAGGSMVHPSVPAILFT 189
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BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: A0A7S2RIK7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIK7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.160e-19
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDVYALYIT 168
            G+SPYL NLEC+CD  HLTTVQADG+I ATPTGSTAYSM+AGGS+V   V A+ +T
Sbjct:   65 GASPYLANLECFCDNVHLTTVQADGIIFATPTGSTAYSMAAGGSVVHPAVPAILVT 120
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BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: K8YQW2_NANGC (NAD+ kinase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQW2_NANGC)

HSP 1 Score: 84.0 bits (206), Expect = 2.670e-19
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    4 SSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDVYALYIT 168
            SSPYL +L+C+C+ Q++TTVQADGLIIATPTGSTAYSMSAGGSM+   + AL +T
Sbjct:    1 SSPYLASLDCFCNGQYVTTVQADGLIIATPTGSTAYSMSAGGSMMHPGIQALLLT 55
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BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: A0A6T6C9C9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6C9C9_9RHOD)

HSP 1 Score: 89.4 bits (220), Expect = 2.750e-19
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDVYALYIT 168
            GSSPYL+NL+CYCD++++TTVQADG+I++TPTGSTAYSMSAGGSMV   V A+  T
Sbjct:  419 GSSPYLSNLDCYCDDKYITTVQADGIIMSTPTGSTAYSMSAGGSMVHPSVPAILFT 474
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BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: B7FYY7_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYY7_PHATC)

HSP 1 Score: 85.9 bits (211), Expect = 5.450e-19
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDVYALYIT 168
            GSSPYL  LEC+CD+ HLTTVQADG+I ATPTGSTAYSM+AGGS+V   V A+ +T
Sbjct:   93 GSSPYLAALECFCDDVHLTTVQADGIIFATPTGSTAYSMAAGGSVVHPAVPAILVT 148
[Close]
BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: B8C4D1_THAPS (Inorganic polyphosphate/ATP-NAD kinase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4D1_THAPS)

HSP 1 Score: 85.9 bits (211), Expect = 5.950e-19
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDVYALYIT 168
            GSSPYL +LEC+CD+ HLTTVQADG+I +TPTGSTAYSM+AGGS+V   V A+ +T
Sbjct:   97 GSSPYLASLECFCDDVHLTTVQADGIIFSTPTGSTAYSMAAGGSVVHPAVPAILVT 152
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BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: A0A7S1DCH6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCH6_CYCTE)

HSP 1 Score: 87.0 bits (214), Expect = 8.590e-19
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDVYALYIT 168
            G SPYL NLEC+CD+ HLTTVQADG+I ATPTGSTAYSM+AGGS+V   V A+ +T
Sbjct:  201 GGSPYLANLECFCDDVHLTTVQADGVIFATPTGSTAYSMAAGGSVVHPAVPAILVT 256
[Close]
BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Match: A0A7S2P5Z1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5Z1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.280e-18
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDVYALYIT 168
            GSSPYL NLE +CD+ HLTTVQADG+I +TPTGSTAYSM+AGGS+V   V A+ +T
Sbjct:  137 GSSPYLANLEAFCDDVHLTTVQADGIIFSTPTGSTAYSMAAGGSVVHPVVPAILVT 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1707.3956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIF0_ECTSI1.130e-2197.83NAD(+) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A7S1BK34_9STRA6.610e-2075.00Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S0BNN1_9RHOD9.650e-2071.43Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2RIK7_9STRA1.160e-1971.43Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
K8YQW2_NANGC2.670e-1970.91NAD+ kinase (Fragment) n=1 Tax=Nannochloropsis gad... [more]
A0A6T6C9C9_9RHOD2.750e-1971.43Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
B7FYY7_PHATC5.450e-1971.43Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
B8C4D1_THAPS5.950e-1969.64Inorganic polyphosphate/ATP-NAD kinase (Fragment) ... [more]
A0A7S1DCH6_CYCTE8.590e-1971.43Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2P5Z1_9STRA1.280e-1869.64Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1707contigH-paniculata_contig1707:447..644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog2880.D8LIF0
KEGG rclassRC00002,RC00078
KEGG koko:K00858
KEGG ReactionR00104
KEGG Pathwayko00760,ko01100,map00760,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NADP biosynthetic process
EggNOG OGsCOG0061@1,KOG2178@2759
EC2.7.1.23
COG Functional cat.G
BiGG ReactioniRC1080.CRv4_Au5_s7_g13893_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929348.802626-CDS-H-paniculata_contig1707:446..6441622929348.802626-CDS-H-paniculata_contig1707:446..644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1707 447..644 +
1691480825.3392274-CDS-H-paniculata_contig1707:446..6441691480825.3392274-CDS-H-paniculata_contig1707:446..644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1707 447..644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1707.3956.1prot_H-paniculata_contig1707.3956.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1707 447..644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1707.3956.1

>prot_H-paniculata_contig1707.3956.1 ID=prot_H-paniculata_contig1707.3956.1|Name=mRNA_H-paniculata_contig1707.3956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
GSSPYLTNLECYCDEQHLTTVQADGLIIATPTGSTAYSMSAGGSMVRRDV
YALYITVNPRAKNRK*
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mRNA from alignment at H-paniculata_contig1707:447..644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1707.3956.1 ID=mRNA_H-paniculata_contig1707.3956.1|Name=mRNA_H-paniculata_contig1707.3956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig1707:447..644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATCGAGCCCGTACTTGACGAACCTGGAGTGCTACTGTGATGAGCAGCA
CCTAACAACTGTCCAGGCTGACGGTCTGATCATCGCTACCCCCACTGGGT
CTACGGCCTACAGCATGTCTGCGGGAGGAAGTATGGTAAGAAGAGATGTG
TATGCTCTCTATATTACCGTCAATCCAAGGGCAAAAAACAGGAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1707:447..644+

>mRNA_H-paniculata_contig1707.3956.1 ID=mRNA_H-paniculata_contig1707.3956.1|Name=mRNA_H-paniculata_contig1707.3956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig1707:447..644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATCGAGCCCGTACTTGACGAACCTGGAGTGCTACTGTGATGAGCAGCA
CCTAACAACTGTCCAGGCTGACGGTCTGATCATCGCTACCCCCACTGGGT
CTACGGCCTACAGCATGTCTGCGGGAGGAAGTATGGTAAGAAGAGATGTG
TATGCTCTCTATATTACCGTCAATCCAAGGGCAAAAAACAGGAAGTAAGG
ATCGAGCCCGTACTTGACGAACCTGGAGTGCTACTGTGATGAGCAGCACC
TAACAACTGTCCAGGCTGACGGTCTGATCATCGCTACCCCCACTGGGTCT
ACGGCCTACAGCATGTCTGCGGGAGGAAGTATGGTAAGAAGAGATGTGTA
TGCTCTCTATATTACCGTCAATCCAAGGGCAAAAAACAGGAAGTAA
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