prot_H-paniculata_contig17064.3955.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17064.3955.1
Unique Nameprot_H-paniculata_contig17064.3955.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length801
Homology
BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: D7FSG0_ECTSI (Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG0_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.570e-73
Identity = 315/855 (36.84%), Postives = 383/855 (44.80%), Query Frame = 0
Query:    1 GVGLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRLIPA-VGSNGTVDSGGGSGALHGWLTK---------------MGEEDSAEPLQEESSPTGSKGESV---RARPQSRSSPKRAK---RLEDKRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTRGSDCSRDGEGKSVAAAGHARRPSPGHRGSIKPDRSPRRSLPQGRRFHEESQATLESSARTRNRGGGGDQEQRFRDLRCPASSSTAAGESPAVAGSPARSRSVAVAQPPSEVRTPHVALGGGRTQR---------KRGF-----GFGGEEAAIGTATFLQEGKAAAASGRGS--GESCAVKRKRTDVLEKAWTPRGMASPMSSPMMTPASRLADTPASGASSPSMSQITFSQIDNTVLGALPPDIRTEVVLQLEARQRQREENAGASSMPPTTNARDSGGSGGKGGRHIINSDAAIAALLSATETDVSVRDTAG-GGEGDNGTERGQVPIAPVPFIREGLDVTVRDGPGKTQQVSLDSLWTLRKLRDDNSEAGS--AVKSSVFDRDSLRAMPLGLGLHYASMTEREREQIARRYASAQTMSASRPAAGTSSVGATATDA------------FDSGKEDIEHDANARPPPSRPGAFPLRSSSTSSPMPCPGSPTAVTGGRRLLGGEAPPYSPPPALEHLHHISLSQVDRDVLDCLPHDVRDEVLRAIVSNSGASSSSSGMPGARRGPQDSVDEPGLSERRVDQSERGDGGIAEYGGATADEEGQAE-PGFVDLRSPAAPTLPQLSQDEEGGEGTRVFEVESAEVLRGVLRGWIGGAVASPSQWHLELIYRY 801
            GVGLPRKYLGHGICDARSKLLNL  ATA A+ L   ALQLL+E ++PP KIRG+GLQMTRL+PA  G            +L GWL K                                G+   SV    + P  R+S +  K   R E   A              XXXXXXXXXXXXXXX                              R    P ++   S  QG           ++++      GG         L   A +  AAG S     SP  +R    AQ   ++ TP    G  R            +RG      G   E   +         +A   SGR S  G      R+R +            +P+ +   TP       PA  A SPSMSQITFSQID TVLGALPP++R EV+ Q+EAR+RQR +  G  ++PP +      G G     H      A    LS        R+  G GG    G E  +V       +REG D   R GPGK QQVS+DSLW LRKLR++  E     A   SVFDRDSLRA+PLGLGLHYAS+TE +R QIARRY+ A         AG  S G   + A                 +DI +D ++ PPP           S SSP     SP AV     L   E      P + E L  +SLSQVDRDVLDCLP DVRDEVLR+I +N G S    G                +++   DQ       +  Y     D +G+ +    VD+ SP+    PQ      GG G  VF+VE A  LRGVLR WIGGAV SPSQWHLEL+YRY
Sbjct:  682 GVGLPRKYLGHGICDARSKLLNLGHATADAATLKPHALQLLRECKVPPGKIRGIGLQMTRLVPASAGGXXXXXXXXXXXSLGGWLIKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASSRSVLGDASNPAFRASDENLKPCERAECLGAVGEAAATVDTNSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDEAGPCKNGLESPGQGTGTPSSLPDVSDAASAPSKTAGG---------LAAEAEAGGAAGGSSPCFDSPESARKRKAAQ---DLSTPADGTGAPRNASIGDCATPPARRGARGTTRGEQAEPPPLPPTDIASSRQAGGNSGRLSPGGRFSPPARRRAEPAXXXXXXXXXMTPVGA---TP------PPAGSAGSPSMSQITFSQIDKTVLGALPPELRREVISQVEARKRQRHD--GIVTLPPPS---PHSGGGPSAPPHGEGRAGAGTGPLS--------REAPGQGGAAAGGGETREV-------VREGFDTADRSGPGKVQQVSIDSLWGLRKLREEGGEGDEPGAGPPSVFDRDSLRALPLGLGLHYASLTENQRAQIARRYSQAAGGHGRSSTAGEGSRGRGLSPARGDHDLPYAKASVAGTADDIINDGSSLPPPL--SNXXXXXXSVSSPGMMAVSPEAVRLASPLPREERSVAESPRSAE-LFRLSLSQVDRDVLDCLPSDVRDEVLRSIAANPGGS----GAXXXXXXXXXXXXXXXINQHEDDQGPETT--VTAYDAPQDDRDGRFDMEDVVDICSPS----PQGKHAATGGVGHGVFDVEPAGTLRGVLRRWIGGAVRSPSQWHLELLYRY 1482          
BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: A0A6H5L1W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W8_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 4.600e-67
Identity = 311/856 (36.33%), Postives = 379/856 (44.28%), Query Frame = 0
Query:    1 GVGLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRLIPAVGSNGTVDSGGGSGALHGWLTKMGE--EDSAEPLQEESSPTGSKGESVRARPQSRSSPK-----------RAK----------RLEDKRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTRGSDCSRDGEGKSVAAAGHARRPSPGHRGSIKP--DRSPRRSLPQGRRFHEESQATLESSARTRNRGGGGDQEQRFR----------DLRCPASSSTAAGESPAVAGSPARSRSVAVAQPPSEVRTPHVALGGGRTQRKRGFGFGGEEAA------IGTATFLQEGKAAAASGRGSGESCAVKRKRTDVLEKAWTPRGMASPMSSPMMTPASRLADTPASGASSPSMSQITFSQIDNTVLGALPPDIRTEVVLQLEARQRQREENAGASSMPPTTNARDSGGSGGKGGRHIINSDAAIAALLSATETDVSVRDTAGGGEGDNGTERGQVPIAPVPFIREGLDVTVRDGPGKTQQVSLDSLWTLRKLRDDNSEAGS--AVKSSVFDRDSLRAMPLGLGLHYASMTEREREQIARRYASAQTMSASRPAAGTSSVGATATD-----------AFDSGKEDIEHDANARPPPSRPGAFPLRSSSTSSPMPCPGSPTAVTGGRRLLGGEAPPYSPPPALEHLHHISLSQVDRDVLDCLPHDVRDEVLRAIVSNSGASSSSSGMPGARRGPQDSVDEPGLSERRVDQSERGDGGIAEYGGATADEEGQAE-PGFVDLRSPAAPTLPQLSQDEEGGEGTRVFEVESAEVLRGVLRGWIGGAVASPSQWHLELIYRY 801
            GVGLPRKYLGHG+CDARSKLLNL  ATA A+ L   ALQLL+E ++PP KIRG+GLQMTRL+P  G  G+   GG +G+L GWL K G   E S +PL    S               R+S +           RAK           + ++ A      XXXXXXXXXXXXXXXXXXXXXXX                           P       P  D     SLP           +  +SA T   GG   QE              D    A   TAA +S   A     SR+ ++        TP    G   T R       GE+A        G A   Q G          G                                            A SPSMSQITFSQID TVLGALPP++R EV+ Q+EAR+RQR++  G  ++P        G S    G              +   T    R+  G G    G  R          +REG D   R GPGK QQVS+DSLW+LRKL ++  E     A   SVFDRDSLRA+PLGLGLHYAS+TE++R Q+ARRY+ A          G +S G  ++            A  +G  D   D  +               ++S  M    SP AV     L G E     PP + E L  +SLSQVDRDVLDCLP DVRDEVLR I +N+G S +  G  G            G    + DQ    +  +  Y     D++G+ +    VD+ SP+     Q  Q   G  G   F+ E A  LRGVLR WIGGAV SPSQWHLEL+YRY
Sbjct:  944 GVGLPRKYLGHGVCDARSKLLNLGHATADAATLKPHALQLLRECKVPPGKIRGIGLQMTRLVPG-GGGGSGADGGRAGSLGGWLIKPGAGGEGSIDPLTSRHSAPXXXXXXXXXXXXXRASSRSVLGDASTPALRAKDENVKPCDLGAVAEEAATVDTSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEAGPCENSLESPGQDTGTASSLPV---------VSDAASAPTNAAGGLAAQEAEAGXXXXGSSPCFDSPESARKRTAAQDSSTSADGAGSSRNASI----GGCATPPARRGARGTTR-------GEQAEPPPLPPTGIAPPRQAG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGSAGSPSMSQITFSQIDKTVLGALPPELRQEVISQVEARKRQRQD--GIVTLPXXXXXXXXGPSAPPYGEG-----------RAGARTGPLSREAPGQGGAAGGETR--------EVVREGFDTADRSGPGKVQQVSIDSLWSLRKLTEEGGEGDELGAGPPSVFDRDSLRALPLGLGLHYASLTEKQRAQVARRYSQAVGGHGRSSTGGDASRGRESSPSRGGHDLPYAKASVAGTADAVVDDGSXXXXXXXXXXXXXXPASSPGMMMAVSPEAVGQVSALPGDERSAAEPPRSAE-LFRLSLSQVDRDVLDCLPSDVRDEVLRNIAANAGGSGA--GDEGXXXXXXXXXXXXGRDHHQDDQG--CETTVNAYEAPDDDQDGRVDMEDVVDICSPSL----QEKQTATGVVGHGAFDAEPAGTLRGVLRRWIGGAVRSPSQWHLELLYRY 1738          
BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: REV1_DROME (DNA repair protein Rev1 n=6 Tax=melanogaster subgroup TaxID=32351 RepID=REV1_DROME)

HSP 1 Score: 62.0 bits (149), Expect = 4.550e-6
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 0
Query:    7 KYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRLIPA 64
            KY+GHG+CD  +K   +K AT   + +T   L L+K+A IPPD++RG+G+ +TRL  A
Sbjct:  622 KYMGHGVCDIINKSSLIKYATDDVNVITTVVLDLMKDADIPPDELRGLGIHLTRLEDA 679          
BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: A0A2P6VBM3_9CHLO (DNA polymerase kappa n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBM3_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 5.250e-6
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    1 GVGLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRL 61
            GVG P K++GHGICD  S+ + L + T +A+D++     +L   R+PP  IRG+G+Q+TRL
Sbjct:  628 GVGEPLKFMGHGICDNLSRSVTLARYTDAAADISRECRAVLAVLRVPPQDIRGMGIQVTRL 688          
BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: A0A7S0TQT5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TQT5_HEMAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.290e-5
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    3 GLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRL 61
            G  +  +GHGICD  S+ + L   TA A D+   AL L+++ +IPP+ IRG+G+Q+++L
Sbjct:   27 GHRKGMMGHGICDKMSRSVTLPYFTADAEDIRRTALDLVRQLQIPPEDIRGMGIQVSKL 85          
BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: A0A8J9ZM14_BRALA (REV1 protein n=3 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZM14_BRALA)

HSP 1 Score: 59.7 bits (143), Expect = 2.520e-5
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query:    5 PRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRLIPAVGSN 68
            P K++GHGICD+ SK   L  AT     +   A  +L + ++PP  +RG+G+QMTRL+ A G++
Sbjct:  716 PSKFMGHGICDSLSKSSTLGLATDDPKVIGKEAWNVLSQMKLPPSDLRGLGIQMTRLVSASGAS 779          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSG0_ECTSI2.570e-7336.84Terminal deoxycytidyl transferase rev1, putative n... [more]
A0A6H5L1W8_9PHAE4.600e-6736.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
REV1_DROME4.550e-646.55DNA repair protein Rev1 n=6 Tax=melanogaster subgr... [more]
A0A2P6VBM3_9CHLO5.250e-645.90DNA polymerase kappa n=1 Tax=Micractinium conductr... [more]
A0A7S0TQT5_HEMAN1.290e-542.37Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A8J9ZM14_BRALA2.520e-542.19REV1 protein n=3 Tax=Branchiostoma lanceolatum Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025527HUWE1/Rev1, ubiquitin binding regionPFAMPF14377UBMcoord: 376..405
e-value: 5.2E-5
score: 22.5
IPR036775DNA polymerase, Y-family, little finger domain superfamilyGENE3D3.30.1490.100coord: 3..63
e-value: 1.4E-12
score: 49.8
NoneNo IPR availablePANTHERPTHR45990FAMILY NOT NAMEDcoord: 5..458

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17064contigH-paniculata_contig17064:352..4986 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17064.3955.1mRNA_H-paniculata_contig17064.3955.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17064 352..4986 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17064.3955.1 ID=prot_H-paniculata_contig17064.3955.1|Name=mRNA_H-paniculata_contig17064.3955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=801bp
GVGLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDK
IRGVGLQMTRLIPAVGSNGTVDSGGGSGALHGWLTKMGEEDSAEPLQEES
SPTGSKGESVRARPQSRSSPKRAKRLEDKRAGGGGETAASAAAAAAPEHR
THGSSNSSSSTSTRGSDCSRDGEGKSVAAAGHARRPSPGHRGSIKPDRSP
RRSLPQGRRFHEESQATLESSARTRNRGGGGDQEQRFRDLRCPASSSTAA
GESPAVAGSPARSRSVAVAQPPSEVRTPHVALGGGRTQRKRGFGFGGEEA
AIGTATFLQEGKAAAASGRGSGESCAVKRKRTDVLEKAWTPRGMASPMSS
PMMTPASRLADTPASGASSPSMSQITFSQIDNTVLGALPPDIRTEVVLQL
EARQRQREENAGASSMPPTTNARDSGGSGGKGGRHIINSDAAIAALLSAT
ETDVSVRDTAGGGEGDNGTERGQVPIAPVPFIREGLDVTVRDGPGKTQQV
SLDSLWTLRKLRDDNSEAGSAVKSSVFDRDSLRAMPLGLGLHYASMTERE
REQIARRYASAQTMSASRPAAGTSSVGATATDAFDSGKEDIEHDANARPP
PSRPGAFPLRSSSTSSPMPCPGSPTAVTGGRRLLGGEAPPYSPPPALEHL
HHISLSQVDRDVLDCLPHDVRDEVLRAIVSNSGASSSSSGMPGARRGPQD
SVDEPGLSERRVDQSERGDGGIAEYGGATADEEGQAEPGFVDLRSPAAPT
LPQLSQDEEGGEGTRVFEVESAEVLRGVLRGWIGGAVASPSQWHLELIYR
Y
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025527HUWE1/Rev1_UBM
IPR036775DNA_pol_Y-fam_lit_finger_sf