mRNA_H-paniculata_contig17060.3954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17060.3954.1
Unique NamemRNA_H-paniculata_contig17060.3954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17060.3954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17060contigH-paniculata_contig17060:3348..3956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17060.3954.1prot_H-paniculata_contig17060.3954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17060 3391..3744 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929348.5899792-UTR-H-paniculata_contig17060:3347..33901622929348.5899792-UTR-H-paniculata_contig17060:3347..3390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17060 3348..3390 +
1691480825.2335005-UTR-H-paniculata_contig17060:3347..33901691480825.2335005-UTR-H-paniculata_contig17060:3347..3390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17060 3348..3390 +
1622929348.6213834-UTR-H-paniculata_contig17060:3744..39561622929348.6213834-UTR-H-paniculata_contig17060:3744..3956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17060 3745..3956 +
1691480825.2531154-UTR-H-paniculata_contig17060:3744..39561691480825.2531154-UTR-H-paniculata_contig17060:3744..3956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17060 3745..3956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929348.6033802-CDS-H-paniculata_contig17060:3390..37441622929348.6033802-CDS-H-paniculata_contig17060:3390..3744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17060 3391..3744 +
1691480825.2444267-CDS-H-paniculata_contig17060:3390..37441691480825.2444267-CDS-H-paniculata_contig17060:3390..3744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17060 3391..3744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17060.3954.1

>prot_H-paniculata_contig17060.3954.1 ID=prot_H-paniculata_contig17060.3954.1|Name=mRNA_H-paniculata_contig17060.3954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MKRDNTKRQKVTCKGWAVLQENLTTMEYEQSAPQLYGRSHPHRPCGTANH
HVVSISATDLPTSILLPNLHHSENKRIIEYDYSSMLWQSTREHKETLCVN
HRLFYSSARTTHWGARA*
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mRNA from alignment at H-paniculata_contig17060:3348..3956+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17060.3954.1 ID=mRNA_H-paniculata_contig17060.3954.1|Name=mRNA_H-paniculata_contig17060.3954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=609bp|location=Sequence derived from alignment at H-paniculata_contig17060:3348..3956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTAGCTTAGGTAAAAAACTCAAGACGATACGAGACAAGACCGATGAAGA
GGGACAACACAAAGAGGCAGAAAGTTACATGCAAGGGTTGGGCAGTTTTA
CAGGAAAACCTAACGACAATGGAGTATGAACAGAGTGCACCACAGCTATA
TGGGAGAAGTCATCCCCATCGGCCCTGCGGTACCGCAAATCACCACGTGG
TTTCAATTTCCGCAACAGATTTACCCACAAGCATATTATTGCCGAATTTA
CATCATTCGGAAAACAAGAGAATCATTGAATACGACTATTCAAGCATGTT
GTGGCAATCAACACGTGAGCATAAGGAGACGCTGTGTGTGAATCATAGAC
TTTTCTACAGCAGTGCAAGGACAACACATTGGGGTGCACGCGCGTAGCGC
TAGCCAAAAAAAAATAAAAAATTACGACAAGCCCTGAAAAAAAACAAATC
GGCTACAATTTCCGACAGCAAACACAAAATCAACAGGATGCTGAACGTAA
TTGCCGAAAAGACGACAGGTGAAAAGACGAAAATTCTTAACCACATTCAC
ATGAACATAGGACAAACACGAAATACACTACAAGCCCCACAAAACGCATT
CGAACTGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig17060:3348..3956+

>mRNA_H-paniculata_contig17060.3954.1 ID=mRNA_H-paniculata_contig17060.3954.1|Name=mRNA_H-paniculata_contig17060.3954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig17060:3348..3956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAGGGACAACACAAAGAGGCAGAAAGTTACATGCAAGGGTTGGGC
AGTTTTACAGGAAAACCTAACGACAATGGAGTATGAACAGAGTGCACCAC
AGCTATATGGGAGAAGTCATCCCCATCGGCCCTGCGGTACCGCAAATCAC
CACGTGGTTTCAATTTCCGCAACAGATTTACCCACAAGCATATTATTGCC
GAATTTACATCATTCGGAAAACAAGAGAATCATTGAATACGACTATTCAA
GCATGTTGTGGCAATCAACACGTGAGCATAAGGAGACGCTGTGTGTGAAT
CATAGACTTTTCTACAGCAGTGCAAGGACAACACATTGGGGTGCACGCGC
GTAGATGAAGAGGGACAACACAAAGAGGCAGAAAGTTACATGCAAGGGTT
GGGCAGTTTTACAGGAAAACCTAACGACAATGGAGTATGAACAGAGTGCA
CCACAGCTATATGGGAGAAGTCATCCCCATCGGCCCTGCGGTACCGCAAA
TCACCACGTGGTTTCAATTTCCGCAACAGATTTACCCACAAGCATATTAT
TGCCGAATTTACATCATTCGGAAAACAAGAGAATCATTGAATACGACTAT
TCAAGCATGTTGTGGCAATCAACACGTGAGCATAAGGAGACGCTGTGTGT
GAATCATAGACTTTTCTACAGCAGTGCAAGGACAACACATTGGGGTGCAC
GCGCGTAG
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