mRNA_H-paniculata_contig17055.3952.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17055.3952.1
Unique NamemRNA_H-paniculata_contig17055.3952.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17055.3952.1 vs. uniprot
Match: A0A6H5JPS1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 8.310e-10
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 3 
Query:   27 NGQVFCNSIGCPNSFIPIPDAQNTKCNDDPCSVEQCCDS 143
            +G+ +CNSIGCP  + PIP+A   +C+DDPC V QCC++
Sbjct:    3 DGKTYCNSIGCPGGYTPIPNAWEVECDDDPCEVSQCCEA 41
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BLAST of mRNA_H-paniculata_contig17055.3952.1 vs. uniprot
Match: D7G5E9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E9_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.360e-6
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 3 
Query:   30 GQVFCNSIGCPNSFIPIPDAQNTKCNDDPCSVEQCCDS 143
            G ++CNSIGCP  + PIP+A   +C DD C V QCC++
Sbjct:  125 GGLYCNSIGCPGGYTPIPNAWEVECYDDSCEVSQCCEA 162
[Close]
BLAST of mRNA_H-paniculata_contig17055.3952.1 vs. uniprot
Match: A0A6H5KRN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN6_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.680e-5
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 3 
Query:   36 VFCNSIGCPNSFIPIPDAQNTKCNDDPCSVEQCCDS 143
            ++CNSIGCP  + PIP+A   +C+ D C V QCC++
Sbjct:  113 LYCNSIGCPGGYTPIPNAWEVECSGDSCEVSQCCEA 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17055.3952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPS1_9PHAE8.310e-1053.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G5E9_ECTSI1.360e-652.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRN6_9PHAE1.680e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17055contigH-paniculata_contig17055:2960..4309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size303
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17055.3952.1prot_H-paniculata_contig17055.3952.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17055 2960..4309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929348.2694678-CDS-H-paniculata_contig17055:2959..29941622929348.2694678-CDS-H-paniculata_contig17055:2959..2994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17055 2960..2994 +
1691480825.0643976-CDS-H-paniculata_contig17055:2959..29941691480825.0643976-CDS-H-paniculata_contig17055:2959..2994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17055 2960..2994 +
1622929348.285228-CDS-H-paniculata_contig17055:3659..38731622929348.285228-CDS-H-paniculata_contig17055:3659..3873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17055 3660..3873 +
1691480825.0773299-CDS-H-paniculata_contig17055:3659..38731691480825.0773299-CDS-H-paniculata_contig17055:3659..3873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17055 3660..3873 +
1622929348.2994804-CDS-H-paniculata_contig17055:4255..43091622929348.2994804-CDS-H-paniculata_contig17055:4255..4309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17055 4256..4309 +
1691480825.0886946-CDS-H-paniculata_contig17055:4255..43091691480825.0886946-CDS-H-paniculata_contig17055:4255..4309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17055 4256..4309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17055.3952.1

>prot_H-paniculata_contig17055.3952.1 ID=prot_H-paniculata_contig17055.3952.1|Name=mRNA_H-paniculata_contig17055.3952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
ASAEAYKTTTARFSATPSVARTASSPSLMLRTPSAMTIPAQSSSAVTPSA
PSSPAQTDSRPCSTSGVFCALTVAVMWTCAVMHLSSFATPSDARTASSPF
R
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mRNA from alignment at H-paniculata_contig17055:2960..4309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17055.3952.1 ID=mRNA_H-paniculata_contig17055.3952.1|Name=mRNA_H-paniculata_contig17055.3952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig17055:2960..4309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCGCAGAAGCCTACAAGACAACAACGGCCAGGTAAGACTAATGTCC
TGCGATTGATGATCACGATAATGCGGGGATCCTAACTGCAGACGTGGGTC
GGTCGTTCTTTGCTCTAGAAATATCAGACAAATTATACCCACCTATATTG
TGCATGGATCCTATACAATTGCAATACACTTCAAGAGACACACTTGAACA
AGTTTGTGGTACACGTAACAGGTTTGTGGTACACGTGACCCGCAACGGTT
GTGCCCTGAGAGGTAGCAGCGTATCTTTGTATCAAGTCGTGTATGACCAG
GGCATCATATTGAAGAGGACCCTAGCGTGTAATCATGACCTGAGTTTGGT
TGGACCCACGATCGGGTTTTGATTATTTGGACACGAGTGTATGTAATCGC
GCACACGATGACTATACCTTCTCATATTTTCTGATGTCTGTGTCACTCCT
CGTGGCAACCAACGCACTAACAAACACACACGCATACATGTGTCTTTCTT
GGCGAAAAGTAGGATGTTACGCGTTAGATACTATATTCAGTGATTTGTAG
CAGCTACCTTGCGAACACAACCACCGCGTCCTTGTGTACGATTATCACGC
ATTTACCTGCCTTCGGAGTTCCCAGTAGTGCGTTGAAGTTACCAACCCTG
TACGCCACCCTTTTCTCGCCCTACATGCGTCATTCCATTCCGTCGAAAAG
GTTTTCTGCAACTCCATCGGTTGCCCGAACAGCTTCATCCCCATCCCTGA
TGCTCAGAACACCAAGTGCAATGACGATCCCTGCTCAGTCGAGCAGTGCT
GTGACTCCTTCTGCTCCTTCTTCGCCTGCCCAAACGGATTCACGCCCGTG
TTCAACGTCGGGAGTATTCTGTGCCCTGACGGTGGCTGTGATGTGGACCT
GTGCTGTGATGCACGTAAGTACCGCCGTGGCGTTGACTGTTTGGTTTGGT
ACCGTAGTAGCGACATGCGACACATACGGGTGGAAGTTTTCCCGGTAGTA
GTCTGATTATAAAATTCGAATGGGGTAGTACACGTGTTCTTCTCTTCGCT
AGCAGCTATCGAGATGTGAATAGAAGATCACATTGTTTCGTAATCCAGTG
GGTACACTGCTGCCATGCAGAAGTAGCGGACATATTATCAGCTCTCGCGC
CTGGAACATCAGCGCGACACCGTACGCCAGATAACCGAATAGACATATGG
ATACACAATATAGTAGTTACCGCTTTCTCTAACAGAGGACCGGTGCCGAC
CCTACTGTCCCGCATGCACCCTGTCTCCATACGTGTCATCGAGCAGCTCT
CATCCTTTGCAACTCCATCGGATGCCCGAACGGCTTCATCCCCATTCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17055:2960..4309+

>mRNA_H-paniculata_contig17055.3952.1 ID=mRNA_H-paniculata_contig17055.3952.1|Name=mRNA_H-paniculata_contig17055.3952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig17055:2960..4309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCGCAGAAGCCTACAAGACAACAACGGCCAGGCCTCCGCAGAAGCC
TACAAGACAACAACGGCCAGGTTTTCTGCAACTCCATCGGTTGCCCGAAC
AGCTTCATCCCCATCCCTGATGCTCAGAACACCAAGTGCAATGACGATCC
CTGCTCAGTCGAGCAGTGCTGTGACTCCTTCTGCTCCTTCTTCGCCTGCC
CAAACGGATTCACGCCCGTGTTCAACGTCGGGAGTATTCTGTGCCCTGAC
GGTGGCTGTGATGTGGACCTGTGCTGTGATGCACGTTTTCTGCAACTCCA
TCGGTTGCCCGAACAGCTTCATCCCCATCCCTGATGCTCAGAACACCAAG
TGCAATGACGATCCCTGCTCAGTCGAGCAGTGCTGTGACTCCTTCTGCTC
CTTCTTCGCCTGCCCAAACGGATTCACGCCCGTGTTCAACGTCGGGAGTA
TTCTGTGCCCTGACGGTGGCTGTGATGTGGACCTGTGCTGTGATGCACCT
CTCATCCTTTGCAACTCCATCGGATGCCCGAACGGCTTCATCCCCATTCC
GGCTCTCATCCTTTGCAACTCCATCGGATGCCCGAACGGCTTCATCCCCA
TTCCGG
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