mRNA_H-paniculata_contig17052.3950.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17052.3950.1
Unique NamemRNA_H-paniculata_contig17052.3950.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17052.3950.1 vs. uniprot
Match: A0A6H5JNU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 3.830e-41
Identity = 92/169 (54.44%), Postives = 107/169 (63.31%), Query Frame = 1 
Query:   73 GPDPPVVTRVLPPGLEPSRAEPPEFDPDPALRLERALCYTGDSLSD--TLAFVG-GDRLVAFPSNNVVVLMETPSTSE-----------------QQQQQPSTGLPSSGLPGNDKVTPCRSHVFLRGHTDRVTHLKMSTAGHILASAQGDALGGAGGRGIVRLWDMASF 519
            G DPPVV+RVLPPGLE SR +PPEFDPDPALRL+RALCYTG  LS   T+ FVG G   +AFP NNV+VLMETP   E                 +++          GL    +  P   H+FLRGHTD VT L++S AGH+LASAQGD LG AGG GIVRLW+  S 
Sbjct:  597 GMDPPVVSRVLPPGLESSRPDPPEFDPDPALRLQRALCYTGGDLSGSTTVTFVGRGAEFMAFPCNNVIVLMETPVMPEAVFLGDGPAGMDEGVGAEKEAXXXXXXXRDGLLALQQPAPA-PHIFLRGHTDTVTRLQLSHAGHLLASAQGDPLGAAGGHGIVRLWNATSL 764
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17052.3950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNU2_9PHAE3.830e-4154.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17052contigH-paniculata_contig17052:2900..5242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue7.5e-36
Seed eggNOG ortholog2880.D8LMS4
Preferred nameWDR90
KEGG koko:K11797,ko:K11798
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,KOG0644@2759,KOG3213@1,KOG3213@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons4
Model size545
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17052.3950.1prot_H-paniculata_contig17052.3950.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17052 2900..5241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929348.115802-CDS-H-paniculata_contig17052:2899..30191622929348.115802-CDS-H-paniculata_contig17052:2899..3019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17052 2900..3019 +
1691480824.9955864-CDS-H-paniculata_contig17052:2899..30191691480824.9955864-CDS-H-paniculata_contig17052:2899..3019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17052 2900..3019 +
1622929348.1325617-CDS-H-paniculata_contig17052:3811..40281622929348.1325617-CDS-H-paniculata_contig17052:3811..4028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17052 3812..4028 +
1691480825.0115776-CDS-H-paniculata_contig17052:3811..40281691480825.0115776-CDS-H-paniculata_contig17052:3811..4028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17052 3812..4028 +
1622929348.1488721-CDS-H-paniculata_contig17052:4360..45011622929348.1488721-CDS-H-paniculata_contig17052:4360..4501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17052 4361..4501 +
1691480825.022885-CDS-H-paniculata_contig17052:4360..45011691480825.022885-CDS-H-paniculata_contig17052:4360..4501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17052 4361..4501 +
1622929348.1612878-CDS-H-paniculata_contig17052:5176..52411622929348.1612878-CDS-H-paniculata_contig17052:5176..5241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17052 5177..5241 +
1691480825.0310702-CDS-H-paniculata_contig17052:5176..52411691480825.0310702-CDS-H-paniculata_contig17052:5176..5241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17052 5177..5241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17052.3950.1

>prot_H-paniculata_contig17052.3950.1 ID=prot_H-paniculata_contig17052.3950.1|Name=mRNA_H-paniculata_contig17052.3950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
EEEGGGEEVGGMGARLARECETEGGPDPPVVTRVLPPGLEPSRAEPPEFD
PDPALRLERALCYTGDSLSDTLAFVGGDRLVAFPSNNVVVLMETPSTSEQ
QQQQPSTGLPSSGLPGNDKVTPCRSHVFLRGHTDRVTHLKMSTAGHILAS
AQGDALGGAGGRGIVRLWDMASFADGASSGG
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mRNA from alignment at H-paniculata_contig17052:2900..5242+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17052.3950.1 ID=mRNA_H-paniculata_contig17052.3950.1|Name=mRNA_H-paniculata_contig17052.3950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2343bp|location=Sequence derived from alignment at H-paniculata_contig17052:2900..5242+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAGAGGGGGGAGGGGAGGAGGTCGGAGGGATGGGCGCAAGATTGGC
GAGAGAGTGTGAGACTGAGGGCGGACCGGATCCTCCTGTGGTGACCAGAG
TTCTACCTCCGGGACTAGAGGTAAGGTGGCGGGCGCCGGGCCGGGCTGGG
AAGTGGGGGAGGGGGGTGTATGTGTGATTTGTAAGTGAAGCTACTTGCCA
CAGTCAATAGAACTACAGCTCCAACGGTCATACGATCTTTATGAACTCCC
TCCCTCGTACCCATATTAAGGGTGTGCCGCTGACTTTACAGTTGCGTTGT
GTATACTTTTATCAGGAAAATTAGGCCACGATCGCAGCGTATTCGTTGTT
TGGTGTGTAGTGGTTGGGTCGTTAACCATGCATTCTCGGGAGGACGGAGC
AGGGGGGATGATGGTCTGGTGTATTTGGTTTGGAAGCGCAGGTTTGTGTG
CACGGAAGGAAGACTCGTGTGGAACAGGCCTTCGTGTCGCATGTGATTAT
CAGGTTTGTGCTTTTTGCACTCTCCGTGTGTTTTTGGTCTTGATTCAAGC
CGTTAAAAAAAAACGTTTCAACATTGCCCTGTCTTACCCCTGATGTGTTG
GGCATCTTGTATCTTCATCAAATACAACGTAAATATAAGATACTGGAAAA
TGATTTGTTTCTCAGATCAAAAGTAAAACAACGCGCGCGCGCACACACAC
ACACATATACACCGCCAAAGTCACCTCTGGACTATTTAGTGCAGCACCGA
AAAGCTAACTACCTAATTGACTCCACAATGTTGTTTCCGATTCGGTAGAT
AATTCGGCGTCCATATCTTTTCACACAAAAAAAACACGCTTGTTTTCCGC
CTGTCTCCCGTTTTTCTCACCCGATCATCTTGCACCTCATGGGTGTGCGT
ATATATATATAGCCATCTCGCGCCGAACCACCGGAGTTTGACCCGGATCC
AGCCCTTCGTCTGGAACGAGCTCTCTGTTACACTGGGGATTCTCTATCGG
ATACCTTGGCGTTCGTTGGCGGGGACAGACTGGTGGCGTTTCCGAGCAAT
AACGTCGTGGTTCTCATGGAAACCCCAAGTACTTCAGAGCAGCAGCAGCA
GCAGCCCTCCACTGGGTTGCCCTCATCCGGTAAGGAAGCATATTTGTAGG
AAACTGTTTAGTATTATATTTCCTCCTTGAGCGTCTAATCGCTTAGTCCC
TCGGTCAGATTGCACGACCCCCCTTTGTGTGCAGGCAAAGCGGGAATGAT
TGTGAAAAATTGCCTGACCAAAATAGAAAATACTATTTTTAGGCACTTGA
TAAGTTGGTAGTTTGAAATATATATATATTTTCTGACCAAGCATGGCCTG
ATAAAAAACAAGTTTTTTTTGGCACTTGAGAGTTGCTTAATTCATGTATG
CTACCCTTAACCCCCCCCCCCGCGCTTCCTCCCGATGTCATGTGGCTACA
ATTGGATTCAGGGCTTCCTGGAAATGATAAGGTCACACCATGTCGTTCTC
ATGTGTTTTTGAGGGGACACACAGACAGAGTGACTCATCTGAAAATGAGT
ACCGCAGGGCATATTCTGGCGTCGGCTCAAGGGGATGCGTTGGGAGGTGC
AGGTGAGATATTTCTTTCGGCTGTTTGGTTGAGGGTTGAACGTGGCGTTT
TTTAGGATTCTGTTAAAACAGGTTGTAAAACGCGCGTAATTTTTGTTGTT
TTTGTTGGTAGATTTGAATGTTGCCTTTTTAAGAAACGAAAATTATGAAC
AAGATATATTCATGAATCGGTAGTTTTTTTGTTTTTTTTAGGAAATGATT
GTATGTGTGTATTATGCATGCATGTACAGTGGTTTAGTGTTGAATGTTTT
CCAACCTGACAAGAATTGTTTTACAGTAGCTTAGTTTTGAAGAGAGAAAA
GTATGTGTGTGTGTGTGTGTATGCAGAAAAACGCTCTAGGAGCTAGACGC
TAAATTTTGTCGAGGTATTTTTTCGTTCTATTAATAGTAATTATAGACGT
AAGCATTATGTTTTTTTACCTTCTTTTGTTGTTACTATTTCATCTTTATA
AAGAACTCCCCTACCTTTATAAGAATCAGGAAAACGAAGTCTTCGCCACA
TTAAAAAAAAATAAAAATTACCTTGCTTTTCTACTCTATAAACCAATACT
TTTAAGCTGCAAGTTCATTTTGTATACGCCAACCTGTGACGCCAAGGTAA
CAAACTAAAATCCGACCACCACGAGAAATCCGCCTGATTTCTTTTATTCT
ATTTTTTGCTCCGAGAAAATTTCTCAGGGGGCCGCGGTATTGTTCGACTA
TGGGATATGGCGTCCTTCGCGGACGGTGCTTCTAGTGGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig17052:2900..5242+

>mRNA_H-paniculata_contig17052.3950.1 ID=mRNA_H-paniculata_contig17052.3950.1|Name=mRNA_H-paniculata_contig17052.3950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig17052:2900..5242+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAGAGGGGGGAGGGGAGGAGGTCGGAGGGATGGGCGCAAGATTGGC
GAGAGAGTGTGAGACTGAGGGCGGACCGGATCCTCCTGTGGTGACCAGAG
TTCTACCTCCGGGACTAGAGGAAGAAGAGGGGGGAGGGGAGGAGGTCGGA
GGGATGGGCGCAAGATTGGCGAGAGAGTGTGAGACTGAGGGCGGACCGGA
TCCTCCTGTGGTGACCAGAGTTCTACCTCCGGGACTAGAGCCATCTCGCG
CCGAACCACCGGAGTTTGACCCGGATCCAGCCCTTCGTCTGGAACGAGCT
CTCTGTTACACTGGGGATTCTCTATCGGATACCTTGGCGTTCGTTGGCGG
GGACAGACTGGTGGCGTTTCCGAGCAATAACGTCGTGGTTCTCATGGAAA
CCCCAAGTACTTCAGAGCAGCAGCAGCAGCAGCCCTCCACTGGGTTGCCC
TCATCCGCCATCTCGCGCCGAACCACCGGAGTTTGACCCGGATCCAGCCC
TTCGTCTGGAACGAGCTCTCTGTTACACTGGGGATTCTCTATCGGATACC
TTGGCGTTCGTTGGCGGGGACAGACTGGTGGCGTTTCCGAGCAATAACGT
CGTGGTTCTCATGGAAACCCCAAGTACTTCAGAGCAGCAGCAGCAGCAGC
CCTCCACTGGGTTGCCCTCATCCGGGCTTCCTGGAAATGATAAGGTCACA
CCATGTCGTTCTCATGTGTTTTTGAGGGGACACACAGACAGAGTGACTCA
TCTGAAAATGAGTACCGCAGGGCATATTCTGGCGTCGGCTCAAGGGGATG
CGTTGGGAGGTGCAGGGCTTCCTGGAAATGATAAGGTCACACCATGTCGT
TCTCATGTGTTTTTGAGGGGACACACAGACAGAGTGACTCATCTGAAAAT
GAGTACCGCAGGGCATATTCTGGCGTCGGCTCAAGGGGATGCGTTGGGAG
GTGCAGGGGGCCGCGGTATTGTTCGACTATGGGATATGGCGTCCTTCGCG
GACGGTGCTTCTAGTGGCGGCGGGGCCGCGGTATTGTTCGACTATGGGAT
ATGGCGTCCTTCGCGGACGGTGCTTCTAGTGGCGGC
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