mRNA_H-paniculata_contig17052.3949.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: A0A6H5JNU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE) HSP 1 Score: 135 bits (341), Expect = 1.210e-32 Identity = 69/128 (53.91%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 43 KGYGVLRSIRLGSNMVVRGLYTSDKVYSPQTLPKDIALPVRGGGA-WEDTYGWLWLPEVPDENAAPPPNGTQYHYSSGLPRRAWPPGAXXXXXXXXXXXXXXXXXXXRMEKRHFTAQSTLLGQLLKHD 423
+GYGVLR ++LGSNMVVRG+Y SD VYSPQTLPK++A + GGG WE Y WLWLPE PDENAAPP +GT+ R AWPPGA RMEKRHF A+ +G+LL H+
Sbjct: 164 RGYGVLRGVKLGSNMVVRGVYASDCVYSPQTLPKEMAFRIPGGGKDWETAYNWLWLPEAPDENAAPPADGTR-----PTTRPAWPPGADSPTPSVAAADAADARVRRRMEKRHFFAEPGTVGRLLAHE 286
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: T0QSG3_SAPDV (DUF667 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QSG3_SAPDV) HSP 1 Score: 66.2 bits (160), Expect = 9.700e-9 Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 43 KGYGVLRSIRLGSNMVVRGLYTSDKVYSPQTLPKDIALPVRGGGAWEDTYGWLWLP 210
+GY L+S++L +M +RG+YTSD +Y P+TLPK + LP+ AWE +Y W WLP
Sbjct: 145 EGYDYLKSVQLCCSMSIRGIYTSDILYMPETLPKGMELPLIKSHAWELSYDWHWLP 200
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: A0A485LFU9_9STRA (Aste57867_20150 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFU9_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.310e-8 Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 43 KGYGVLRSIRLGSNMVVRGLYTSDKVYSPQTLPKDIALP-------VRGGGAWEDTYGWLWLPEVPDENAAPPP 243
+GY L++I L S+M VRG+YTSD +Y P+TLPK + P ++ +W+ Y W WLP++P +AP P
Sbjct: 153 EGYAALKAISLCSSMFVRGIYTSDILYLPETLPKSMQFPLVKPADGIQASNSWDVVYDWRWLPQLP---SAPTP 223
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: A0A024TNJ4_9STRA (DUF667 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNJ4_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 7.820e-8 Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 43 KGYGVLRSIRLGSNMVVRGLYTSDKVYSPQTLPK----DIALPVRGG----GAWEDTYGWLWLPEVPDE 225
+G+ L++I L S+M VRG+YTSD +Y P+TLPK + P+ GG W+ TY W WLP++P E
Sbjct: 154 EGFDALKTIVLCSSMYVRGVYTSDILYIPETLPKAMKFPLVKPMEGGVQTTNTWDATYDWRWLPQLPCE 222
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: A0A6G0WVL0_9STRA (DUF667 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVL0_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.050e-7 Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 43 KGYGVLRSIRLGSNMVVRGLYTSDKVYSPQTLPKDIALPV------RGGGAWEDTYGWLWLPEVPDENAAP 237
+GY L+++ L S+M VRG+YTS+ +Y P+TLP+ + PV G +W Y W WLP+ P E P
Sbjct: 129 EGYEALKAVLLCSSMYVRGIYTSNILYLPETLPRAMQFPVVKSIDENGSASWNAAYDWHWLPQSPKEPNTP 199
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: A0A1V9YPV8_9STRA (WD repeat-containing protein 90 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPV8_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 4.630e-7 Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 43 KGYGVLRSIRLGSNMVVRGLYTSDKVYSPQTLPKDIALPVRG------GGAWEDTYGWLWLPEVPDENAAPPPN 246
+GY ++S+++ +M +RG++TSD +Y P+TLPK + LP+ AW Y W+WLPE P N P N
Sbjct: 149 EGYACVKSLQICCSMNIRGVFTSDIIYMPETLPKGMELPLLKTPGNVISDAWNTVYDWVWLPE-PQSNQPPVDN 221
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: D2UZY6_NAEGR (Uncharacterized protein FM144 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UZY6_NAEGR) HSP 1 Score: 60.5 bits (145), Expect = 8.330e-7 Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 58 LRSIRLGSNMVVRGLYTSDKVYSPQTLPKDIALPVRGGGAWEDTYGWLWLPEVP 219
+R I SN+ ++ +YTSD +YS TL KD+ LPV G +W D Y W W+P P
Sbjct: 119 IRGIITCSNLSLKNVYTSDNIYSTDTLTKDMFLPVPKGSSWTDLYEWHWIPSEP 172
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: W4GNL5_9STRA (DUF667 domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNL5_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 8.390e-7 Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 43 KGYGVLRSIRLGSNMVVRGLYTSDKVYSPQTLPKDIALPV-----RGGGAWEDTYGWLWLPEVPDENA-------APPPNGTQYH 261
+GY L+++ L S+M VRG++TSD +Y P+TLPK + P+ AW+ +Y W W+P +P +++ APP TQ H
Sbjct: 156 EGYEALKAMLLCSSMYVRGVFTSDILYLPETLPKAMQFPLVKAMDDATNAWDASYDWRWMPHLPTDSSTSSGLALAPP---TQLH 237
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: A0A0L0D4U4_THETB (WD repeat-containing protein 90 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D4U4_THETB) HSP 1 Score: 57.0 bits (136), Expect = 1.200e-5 Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 49 YGVLRSIRLGSNMVVRGLYTSDKVYSPQTLPKDIALPVRGGGAWEDTYGWLWLP 210
Y L++I+L S ++VR ++TS +YSP +LP+D+ALP+R G +W D Y + LP
Sbjct: 155 YHSLKAIQLCSTLLVRNVFTSYNIYSPTSLPRDMALPLRPGRSWHDLYTYDRLP 208
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Match: A0A6A5C939_NAEFO (DUF667 domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C939_NAEFO) HSP 1 Score: 56.2 bits (134), Expect = 2.150e-5 Identity = 19/47 (40.43%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 79 SNMVVRGLYTSDKVYSPQTLPKDIALPVRGGGAWEDTYGWLWLPEVP 219
+N+ ++ ++TSD +Y+P+ L KD+ LP+ G W D Y W W+P P
Sbjct: 159 ANLSLKNIFTSDNLYTPENLAKDLYLPIHKGMNWSDEYDWFWIPGEP 205 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17052.3949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17052.3949.1 >prot_H-paniculata_contig17052.3949.1 ID=prot_H-paniculata_contig17052.3949.1|Name=mRNA_H-paniculata_contig17052.3949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp GRGSGSGGGGGTGSKGYGVLRSIRLGSNMVVRGLYTSDKVYSPQTLPKDIback to top mRNA from alignment at H-paniculata_contig17052:609..2470+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17052.3949.1 ID=mRNA_H-paniculata_contig17052.3949.1|Name=mRNA_H-paniculata_contig17052.3949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1862bp|location=Sequence derived from alignment at H-paniculata_contig17052:609..2470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17052:609..2470+ >mRNA_H-paniculata_contig17052.3949.1 ID=mRNA_H-paniculata_contig17052.3949.1|Name=mRNA_H-paniculata_contig17052.3949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig17052:609..2470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |