mRNA_H-paniculata_contig17045.3944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17045.3944.1
Unique NamemRNA_H-paniculata_contig17045.3944.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17045.3944.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 3.800e-23
Identity = 64/177 (36.16%), Postives = 95/177 (53.67%), Query Frame = 2 
Query:  290 PLVQFKAFLRDDWLFHERLKYKKDEHKEHRNFIMLRRNGLAEFLMENDARGYWRLERRLSPVHEQKLQKMNRMVTKRFMRKKEEAP--TEGVDYWVMDIP-QDKRHEEVLTYEIPVSRGKYHPAAVRWAREGAIYRWKQSDEVNEEEVYGVPPKFRKKVGTFSVGIKTLAPMVDRAY 811
            PLVQ  +F + DW       +K+D+ K   +F+  R N LA F    +  GYW+L RR  P                    K ++P   EG+DY V+DIP Q  R   +++YEIP+S G+YHP+++ +A++G IY         +E++ G     RKK+G+FSV + TL PMVDR +
Sbjct:   15 PLVQDGSFAKADWRITRDFFFKRDQAKNGADFLTARENKLARFNNSGEV-GYWKLVRRPIPG-----------------APKRQSPLGNEGIDYLVLDIPEQGPRRNLIVSYEIPISNGRYHPSSIMFAQKGTIYVANA-----KEQLVGPAAAARKKIGSFSVDLPTLEPMVDRTF 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17045.3944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC9_ECTSI3.800e-2336.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17045contigH-paniculata_contig17045:2..4939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004500.1
Exons4
Model size1443
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17045.3944.1prot_H-paniculata_contig17045.3944.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17045 625..4758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.229035-UTR-H-paniculata_contig17045:1..6241622929347.229035-UTR-H-paniculata_contig17045:1..624Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17045 2..624 -
1691480824.5647101-UTR-H-paniculata_contig17045:1..6241691480824.5647101-UTR-H-paniculata_contig17045:1..624Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17045 2..624 -
1622929347.294149-UTR-H-paniculata_contig17045:4758..49391622929347.294149-UTR-H-paniculata_contig17045:4758..4939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17045 4759..4939 -
1691480824.6153939-UTR-H-paniculata_contig17045:4758..49391691480824.6153939-UTR-H-paniculata_contig17045:4758..4939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17045 4759..4939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.2409716-CDS-H-paniculata_contig17045:624..8251622929347.2409716-CDS-H-paniculata_contig17045:624..825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17045 625..825 -
1691480824.5753446-CDS-H-paniculata_contig17045:624..8251691480824.5753446-CDS-H-paniculata_contig17045:624..825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17045 625..825 -
1622929347.2511773-CDS-H-paniculata_contig17045:2434..26891622929347.2511773-CDS-H-paniculata_contig17045:2434..2689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17045 2435..2689 -
1691480824.588266-CDS-H-paniculata_contig17045:2434..26891691480824.588266-CDS-H-paniculata_contig17045:2434..2689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17045 2435..2689 -
1622929347.2655551-CDS-H-paniculata_contig17045:3257..33201622929347.2655551-CDS-H-paniculata_contig17045:3257..3320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17045 3258..3320 -
1691480824.59806-CDS-H-paniculata_contig17045:3257..33201691480824.59806-CDS-H-paniculata_contig17045:3257..3320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17045 3258..3320 -
1622929347.2825038-CDS-H-paniculata_contig17045:4638..47581622929347.2825038-CDS-H-paniculata_contig17045:4638..4758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17045 4639..4758 -
1691480824.6063788-CDS-H-paniculata_contig17045:4638..47581691480824.6063788-CDS-H-paniculata_contig17045:4638..4758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17045 4639..4758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17045.3944.1

>prot_H-paniculata_contig17045.3944.1 ID=prot_H-paniculata_contig17045.3944.1|Name=mRNA_H-paniculata_contig17045.3944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MLLWRTAVRTVAMVAWVAAFGVRIACGDKKPPPPPEPLVQFKAFLRDDWL
FHERLKYKKDEHKEHRNFIMLRRNGLAEFLMENDARGYWRLERRLSPVHE
QKLQKMNRMVTKRFMRKKEEAPTEGVDYWVMDIPQDKRHEEVLTYEIPVS
RGKYHPAAVRWAREGAIYRWKQSDEVNEEEVYGVPPKFRKKVGTFSVGIK
TLAPMVDRAYKA*
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mRNA from alignment at H-paniculata_contig17045:2..4939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17045.3944.1 ID=mRNA_H-paniculata_contig17045.3944.1|Name=mRNA_H-paniculata_contig17045.3944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4938bp|location=Sequence derived from alignment at H-paniculata_contig17045:2..4939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTCACCGCAGCTTTGGCCAGCTTTCAGGCTTCCCAACTCTGTGCCCTC
ACGACTTTCGACGGTAGGCATTCATCTGAAAGATCACGCAGACGGAGGAG
TAATCGGTACCGCCTCCACCATCTTCACTAGAAGATAGACAATTTTACGT
CGCGTTCACTGTACAAGTGGGGACCAAAATCATGTTGCTGTGGCGAACAG
CTGTACGTACGGTCGCCATGGTGGCCTGGGTAGCTGCCTTTGGAGTTAGA
ATTGCGTGTGGAGACAAGAAGCCCCCGCCGCCGCCGGAGCCTCTGGTTCA
GGTATGGGTGTAACGTATATATGCTCTTCGTTTCTTTGTGTCTGCGTATT
TCGTTATCCAGTTGGCGTGCCTCTGTTATGTGTAGTATAGCTTGTCATGT
CATTGCTGTTGCAGTGTCGATGCTTGGCAGGCATTACGCATGATGGATCA
CTGAACGCCCAGCGGTGCGCTGCACTTGTACCGTCGCTGCGCTAACTTAC
CAGTAGGCCTGGTGAGCTCTTGTGTATGCCTCTATGAGCTTTGGCGGGAA
CTTTCGAATGCTGCAGTGTTTTGCTGTAAATCATGCTGTCGGGGCAACGC
TGTAGAAAGTTCATTGTTGCCACGCGGCAATTGGGTATGGAACAAACATA
CTGAACCTTCAAATTATGAGGCACTTCGACTCCCTCTCCCTCGTGTTTGT
GATATGAGTACAAATGATTTAGAGTATATCCAACAGGCGGTCCCTTCATT
GTATCTGTGCCTCATGTTGTGTCGTAGGCGAAATAATGGTTTGAAAGATC
AGGTCCATGGGTATCACATCTTGTTTTGCCACCACAGACAGTTGATTCGG
ACTTGTCGTTTTTATCAACGTTTTGAACAAGTGACCTACATGTGAGCAGT
ACTAGTAACATTAGGCTCACAAGTCACTCAGTTGGTCCCCTCCGGAAAAA
CGAGAAACGCCATCAATACGAGCTAGTCGGTTGGTCGCTGGAAGTGGTAG
TTTCGTTTTTTTCGTGTAGAACGGGCCATTGTGTCCACTATTTACCAGCA
GTCTGTGTTAGATCAAGACCACTGCACCTCTGAAATCACCTCAACACTCT
CTGTTACGGCACTGGGTTGCGAAAGCGTTTCCAGCTCTACTGACAGCGAC
AGGTGTGTCATTGGCAAGATCTTGCGGAGATCTGTTGATTGACGAGCTCT
TTAGACCGCGTAAGGTCTTTGTTATCCAGATGGTCTCGTTCGGAAAACGT
CCGCACCTCGGTGAAGTGACGAAGGGCTTTACGGCATACACTAAGTATTG
CATACATTATCTGAGCAATAGTAATCAGTATCACCAGTCAAGCCATAAAC
ACGCCTCTCCAACGCCTTCTGTCTCTCAGGTGCTTGATGCTTCTCACACA
CCTCCACATTCAAGAATATATCTACTTATCAACGCTGCGACATTTGTGAA
CAGACAGTCAGTTTGTACACACCAACATAATGGAGAAGCAAAGCTAGCCC
GTTCAGGTTTTAACGGCTATTGTGGTCTCTGCCGTTCACGTCTGCCCGTC
TCCCCCTCTCCCTCTCATTTGCTGTGTTCGTTGCCATCTTGTGTTCTCTC
TTTCGGGCTGGTAAAACAGTTCAAAGCGTTTCTGCGAGACGATTGGCTGT
TCCACGAAAGGTTGAAGTACAAAAAGGATGAGGTATGTAAGCGCCTTACG
CATGAATGTCGGTACGATAGCGACCCTATCACAGCAACCCCTGACATACA
ACCATGCGACCCTGACTAGTTTTAATTAACATCGGTCATCATCGTGTGAT
ATCTCACAGATCTTATTGAGTAACCAAAGCGCTCTGAGTGGAGTGGAGCA
AGAAACACTCTCCTCTCATCAGTTTGACTATTGAGTTGTTGGTGAGGTCT
GGTCCGTGGAGTAGCTGCAACCTCCCCCTCCCTTCTCTGTGTTGCTCCCA
TTATCCTGCCCACCCTTCGTGCCCCCTTGCCCACAGCACCCTCCTCCATT
CCCCTCGTTGTTCTATTTTGCAAATGACTAAATCTGGCAATGATTGTAAA
CTACATAACCTAAGCTTGATCACGAAAAGGGTGATGAATAGACACGTCTG
AAAACAGGAGGGTGAACCAGTCTGTATGAGGTTCGCGCGAGTCAGATGTC
TATCTTCGAGTCAGGTGTTCGTTTCTAGGTCACCATATCTTTACACTCAA
CATTACACATGCGATGTGATATGCCCCCCTCCCCCGTTCGGTGTTATCAG
CACAAGGAACACAGGAATTTCATAATGCTGCGCCGGAATGGTTTGGCCGA
GTTCCTCATGGAGAATGACGCGAGGGGGTACTGGAGATTGGAGAGGCGTC
TGTCTCCTGTGCACGAGCAGAAACTACAGAAAATGAATCGGATGGTGACC
AAGAGGTTCATGAGGAAGAAAGAGGAGGCGCCGACGGAGGGCGTGGACTA
CTGGGTGATGGATATACCGCAGGACAAGAGACACGAAGAGGTGTTGACGT
ACGAGGTGTGTTACTAACTCGTTGGTGTTCTGGAATATTTTTCCAATTCT
ATGCTCAACTAACTTCTAAAAACTGAATCTTCGTGGATATTATGACTACT
GGGGAAAACATCAAGCTACTGCGAGAGCAGCGTTGTGCATGGCTCGAGGA
CAACGTACGCACTGCGCGGGCACAGCCATGGTCATACTCTACAGATCACT
GGTATTGTTTTTACAGAGCGAATGTTTTGTTTTTGTGCTTATTTCGTTCT
TTTTTTTCTTGATCTTCGCCTTGTTCGTGGTCGTGGTCAATCCACACTCT
ATTGTTGCAATCTGCAAGTGGGGTATTTACGGTACCAACCACAGCGCATT
CAGTTACATCACGAGAATGTTCATATGCATGGCTAGCGGCTATCATGTCA
ACAGCACACGAACGCCAGGCCCCATGCCCGGTGCCCACGTCTGTCTTTTT
TGTTGGGATGCCCATCAGCTAGTATTGAAAAATAGATTGGAGGCTACGTA
AACTATATGCTTGCATTAAATACGCGTAATGAGAATGCAGGTACATTACG
ATGGCCATTTCGCTCTTGGCGTTCTTTTTTCTTTGGGGCAATTACTCCCA
AGGTGTTCAGAATGTAATCTATCGCCCATTGAATGATCTACTTTTTAGGT
TTTTATATATCTTTGCGGGGTCCGGGTAGACCTCGTGAATCTGGGCGGAT
CCTCGTCGATTTACGCGATATCAAAGGTGCCGAACGTATCCATGTTGACC
GTTTGTCTTTCGGCAAAACATTTACCCTGCTTCGACTCCTGTGACCGTGC
TGCAGGCCGTGTTTTATCTTGTCGAATTACTTCTCCAGACAGTTACTGCA
CAACGGTACATAGGCAACGCTCCGAGGCTCTTAAATGCAACACGGTAGTC
CGCTTCTTGTGGTTGCTGTCACTTTGGCGATAACTGTGGGTTCTTCTGGC
TACTTAGTACTGCTTGTGCTGCGGACTTGGCGCGACTTGGACTGAAATGA
CGGAGGGAAAAAAATCCGTTAATTTTTAATCTCATAACAACATGACCATG
AGCATTACAAAACTAGACGATACATATATATACATCCTATATTATTCTTC
TGTTTCCGTTTTTTTCATCATAGCTCATCTGCAGCAAACAGCCTTGCTGC
CACCGCCCCCATCCCCTAAAGTCTTGCTCCATTTAGTTGGCAGGTGGTTC
TATTTATTTCCGAATTTATAGAAATATTTAGCCTTACTAAATTGGAAAAT
TTGCCGTGAATGTACACAGCCTTGATTCCGTTTGGGCTAACATTTTTTAC
GTTAATATAAAAGTTCCTTGCCACTCCAACGCAGGGTTACAGTCACGCCT
TCCGAATATGCAATATTTGGTTACCCGGGATCATGGCAGAATCCGGTTGG
CGTAGTAGCAACGTCAGAATGATGATGACTTGTGCCTAATCTTGTGGAAC
GCAGCCTGGCCGGGGCGAAAACTGTCATGCTCGGTCCTCAGATTGCAGGG
ATGCGAGGTCAATGATCCAGAGACTACGGCACGCGTTTGCATGAACACTC
TTCCCCCCCCCACCCCCCCCCCACCCCACGCACGCATCCGCGCACTCCCT
TGTTATTATTCAAGATTCCGGTATCCAGAGGGAAGTACCACCCTGCAGCT
GTTCGCTGGGCGCGGGAGGGCGCTATCTACCGGTGGAAACAGAGTGACGA
AGTGAACGAGGAAGAAGTGTACGGAGTACCCCCCAAGTTCCGGAAAAAGG
TTGGAACTTTCTCTGTCGGCATCAAAACGCTCGCTCCTATGGTCGACCGT
GCGTACAAAGCGTAATAACGGCAAGGAGGCGCGCACGCGGGGGCGGGGAG
GGCTTACGAATGAACGGATAACAGTGGCGTTCGCTCTGAGGCGTGGTTAG
CGCTGCCCGTCAAAACCGTAGAGAATTTGCTACTTGCTTATGTCCAAGTA
ATGGTTGGTTTTAAGCAGGAGGGTACATAGAGTTTGTGAGGATTAGGGAG
GAACGCATGAGGGATGTGGTGAAGTGGTCATGGTCCTGCGGTTGTGGATA
GCTAATGCTGACGTACGTTTTTTCCCTGTGTCATGTGAAGATAAACTCGG
GGTTTTTTGTCGAGTAATCTGGGGGAGAACGGAAACCGCGACAACTGTTT
TGTGCGTAGGTTTGCTGGGATTTTGCTGGTTGTCCCCCAGCCGTGAGGTT
TTTGGAGCAACGACACATTTTCGCACTTCACTCACTAAAGGGCAAACGGT
ACATGGTTTTTTGTTTCGTGTGTGCAGCTGCCATCTTATGCTGCTCGTGT
CTTCTTATTGCTCTTGTTTTTTTAACCCCCGGAAGGCTGAGGCAAAAACC
TTTACCGCTGCTTCCACACTCAGGTATATTCACCCAAGCATGTCTACATT
TCCTTTAACAGAACAGAGTTATTTATTCCTCTGCAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17045:2..4939-

>mRNA_H-paniculata_contig17045.3944.1 ID=mRNA_H-paniculata_contig17045.3944.1|Name=mRNA_H-paniculata_contig17045.3944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig17045:2..4939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTGTGGCGAACAGCTGTACGTACGGTCGCCATGGTGGCCTGGGT
AGCTGCCTTTGGAGTTAGAATTGCGTGTGGAGACAAGAAGCCCCCGCCGC
CGCCGGAGCCTCTGGTTCAGATGTTGCTGTGGCGAACAGCTGTACGTACG
GTCGCCATGGTGGCCTGGGTAGCTGCCTTTGGAGTTAGAATTGCGTGTGG
AGACAAGAAGCCCCCGCCGCCGCCGGAGCCTCTGGTTCAGTTCAAAGCGT
TTCTGCGAGACGATTGGCTGTTCCACGAAAGGTTGAAGTACAAAAAGGAT
GAGTTCAAAGCGTTTCTGCGAGACGATTGGCTGTTCCACGAAAGGTTGAA
GTACAAAAAGGATGAGCACAAGGAACACAGGAATTTCATAATGCTGCGCC
GGAATGGTTTGGCCGAGTTCCTCATGGAGAATGACGCGAGGGGGTACTGG
AGATTGGAGAGGCGTCTGTCTCCTGTGCACGAGCAGAAACTACAGAAAAT
GAATCGGATGGTGACCAAGAGGTTCATGAGGAAGAAAGAGGAGGCGCCGA
CGGAGGGCGTGGACTACTGGGTGATGGATATACCGCAGGACAAGAGACAC
GAAGAGGTGTTGACGTACGAGCACAAGGAACACAGGAATTTCATAATGCT
GCGCCGGAATGGTTTGGCCGAGTTCCTCATGGAGAATGACGCGAGGGGGT
ACTGGAGATTGGAGAGGCGTCTGTCTCCTGTGCACGAGCAGAAACTACAG
AAAATGAATCGGATGGTGACCAAGAGGTTCATGAGGAAGAAAGAGGAGGC
GCCGACGGAGGGCGTGGACTACTGGGTGATGGATATACCGCAGGACAAGA
GACACGAAGAGGTGTTGACGTACGAGATTCCGGTATCCAGAGGGAAGTAC
CACCCTGCAGCTGTTCGCTGGGCGCGGGAGGGCGCTATCTACCGGTGGAA
ACAGAGTGACGAAGTGAACGAGGAAGAAGTGTACGGAGTACCCCCCAAGT
TCCGGAAAAAGGTTGGAACTTTCTCTGTCGGCATCAAAACGCTCGCTCCT
ATGGTCGACCGTGCGTACAAAGCGTAAATTCCGGTATCCAGAGGGAAGTA
CCACCCTGCAGCTGTTCGCTGGGCGCGGGAGGGCGCTATCTACCGGTGGA
AACAGAGTGACGAAGTGAACGAGGAAGAAGTGTACGGAGTACCCCCCAAG
TTCCGGAAAAAGGTTGGAACTTTCTCTGTCGGCATCAAAACGCTCGCTCC
TATGGTCGACCGTGCGTACAAAGCGTAA
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