mRNA_H-paniculata_contig17043.3943.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17043.3943.1
Unique NamemRNA_H-paniculata_contig17043.3943.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17043.3943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17043contigH-paniculata_contig17043:1442..1747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.197917-CDS-H-paniculata_contig17043:1441..17471622929347.197917-CDS-H-paniculata_contig17043:1441..1747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17043 1442..1747 +
1691480824.5550854-CDS-H-paniculata_contig17043:1441..17471691480824.5550854-CDS-H-paniculata_contig17043:1441..1747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17043 1442..1747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17043.3943.1prot_H-paniculata_contig17043.3943.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17043 1442..1747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17043.3943.1

>prot_H-paniculata_contig17043.3943.1 ID=prot_H-paniculata_contig17043.3943.1|Name=mRNA_H-paniculata_contig17043.3943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
SRVTSARISALVMQMTAHSQSHAGRNGMQVSDKFEGSFLMYVQHHHHEMA
NNQCATFMRVRNGRVVPYGPAATVLCALIVAYSGVWLDRGANAEFTDGGD
VE
back to top

mRNA from alignment at H-paniculata_contig17043:1442..1747+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17043.3943.1 ID=mRNA_H-paniculata_contig17043.3943.1|Name=mRNA_H-paniculata_contig17043.3943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig17043:1442..1747+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCGGGTAACCTCGGCTCGGATATCTGCGCTGGTCATGCAGATGACAGC
ACACTCGCAAAGTCACGCAGGAAGAAATGGGATGCAGGTCTCTGACAAGT
TTGAGGGCTCATTTCTAATGTATGTCCAACATCACCACCACGAGATGGCC
AATAACCAATGTGCAACATTTATGAGAGTTCGAAACGGTCGTGTTGTACC
CTATGGCCCTGCCGCGACAGTGCTATGTGCTCTAATAGTTGCTTATTCTG
GCGTCTGGTTAGACCGAGGAGCTAATGCTGAGTTCACCGATGGAGGGGAT
GTGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17043:1442..1747+

>mRNA_H-paniculata_contig17043.3943.1 ID=mRNA_H-paniculata_contig17043.3943.1|Name=mRNA_H-paniculata_contig17043.3943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig17043:1442..1747+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCGGGTAACCTCGGCTCGGATATCTGCGCTGGTCATGCAGATGACAGC
ACACTCGCAAAGTCACGCAGGAAGAAATGGGATGCAGGTCTCTGACAAGT
TTGAGGGCTCATTTCTAATGTATGTCCAACATCACCACCACGAGATGGCC
AATAACCAATGTGCAACATTTATGAGAGTTCGAAACGGTCGTGTTGTACC
CTATGGCCCTGCCGCGACAGTGCTATGTGCTCTAATAGTTGCTTATTCTG
GCGTCTGGTTAGACCGAGGAGCTAATGCTGAGTTCACCGATGGAGGGGAT
GTGGAGAGTCGGGTAACCTCGGCTCGGATATCTGCGCTGGTCATGCAGAT
GACAGCACACTCGCAAAGTCACGCAGGAAGAAATGGGATGCAGGTCTCTG
ACAAGTTTGAGGGCTCATTTCTAATGTATGTCCAACATCACCACCACGAG
ATGGCCAATAACCAATGTGCAACATTTATGAGAGTTCGAAACGGTCGTGT
TGTACCCTATGGCCCTGCCGCGACAGTGCTATGTGCTCTAATAGTTGCTT
ATTCTGGCGTCTGGTTAGACCGAGGAGCTAATGCTGAGTTCACCGATGGA
GGGGATGTGGAG
back to top