mRNA_H-paniculata_contig17040.3942.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17040.3942.1
Unique NamemRNA_H-paniculata_contig17040.3942.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17040.3942.1 vs. uniprot
Match: D7FV70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV70_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 9.060e-21
Identity = 74/108 (68.52%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:  274 MPKGGRLVFKGGEKAVSERGKKKEXXXXXXXXXXXXXXXXGLLAGSAAEVEGEARRDQEEPEE---EMRPISGTGRVTSSGTAVHGHGSKFMDEVHSGDAIIITHPTT 588
            MPKGGRLVFKGGE AVS RGKKK+  XXXXXXXXXXXXXX    G AA                  EMRP+SGTGR+TSSGTAVHGH +KFMDE+HSGDAI+ITHPTT
Sbjct:    1 MPKGGRLVFKGGEVAVSSRGKKKDKLXXXXXXXXXXXXXXST--GEAAXXXXXXXXXXXXXXXXXXEMRPVSGTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTT 106
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BLAST of mRNA_H-paniculata_contig17040.3942.1 vs. uniprot
Match: A0A835Z5I8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-8
Identity = 26/42 (61.90%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  463 EMRPISGTGRVTSSGTAVHGHGSKFMDEVHSGDAIIITHPTT 588
            E+RP++GTGR++SSGT V GHG++FM E+ +GDA+I+THPT+
Sbjct:   33 ELRPVAGTGRISSSGTVVTGHGTRFMSELRAGDALIVTHPTS 74
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BLAST of mRNA_H-paniculata_contig17040.3942.1 vs. uniprot
Match: A0A482SUG7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUG7_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 2.480e-7
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:  448 EEPEEEMRPISGTGRVTSSGTAVHGHGSKFMDEVHSGDAIIITHPTT 588
            E  E E+   SGTGR+TSSG+ +HGHG++FM ++  GDAI+ITHPTT
Sbjct:   30 EAKEFEVTVKSGTGRITSSGSTIHGHGTEFMSQLTVGDAIMITHPTT 76
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BLAST of mRNA_H-paniculata_contig17040.3942.1 vs. uniprot
Match: A0A7S2D383_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D383_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.190e-5
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  415 AEVEGEARRDQEEPEEEMRPISGTGRVTSSGTAVHGH-GSKFMDEVHSGDAIIITHPTT 588
            A  E E R   E P   +R  +G+GR+++SGT V GH GS+FMDE+H+GDAII+THP +
Sbjct:   20 ANEEAETRSQAEPPPIVIR--TGSGRISTSGTIVTGHDGSRFMDELHNGDAIIVTHPAS 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17040.3942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FV70_ECTSI9.060e-2168.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5I8_9STRA1.000e-861.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SUG7_9ARCH2.480e-759.57Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2D383_9STRA1.190e-552.54Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17040contigH-paniculata_contig17040:2521..5563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog2880.D7FV70
Hectar predicted targeting categoryother localisation
EggNOG OGs2A1XA@1,2RY1S@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size3043
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17040.3942.1prot_H-paniculata_contig17040.3942.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17040 2794..3111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.1260943-UTR-H-paniculata_contig17040:2520..27931622929347.1260943-UTR-H-paniculata_contig17040:2520..2793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17040 2521..2793 +
1691480824.5310245-UTR-H-paniculata_contig17040:2520..27931691480824.5310245-UTR-H-paniculata_contig17040:2520..2793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17040 2521..2793 +
1622929347.1588209-UTR-H-paniculata_contig17040:3111..55631622929347.1588209-UTR-H-paniculata_contig17040:3111..5563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17040 3112..5563 +
1691480824.5475156-UTR-H-paniculata_contig17040:3111..55631691480824.5475156-UTR-H-paniculata_contig17040:3111..5563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17040 3112..5563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.1433773-CDS-H-paniculata_contig17040:2793..31111622929347.1433773-CDS-H-paniculata_contig17040:2793..3111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17040 2794..3111 +
1691480824.539748-CDS-H-paniculata_contig17040:2793..31111691480824.539748-CDS-H-paniculata_contig17040:2793..3111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17040 2794..3111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17040.3942.1

>prot_H-paniculata_contig17040.3942.1 ID=prot_H-paniculata_contig17040.3942.1|Name=mRNA_H-paniculata_contig17040.3942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MPKGGRLVFKGGEKAVSERGKKKEKLKRKREKALAKAEAEGLLAGSAAEV
EGEARRDQEEPEEEMRPISGTGRVTSSGTAVHGHGSKFMDEVHSGDAIII
THPTT*
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mRNA from alignment at H-paniculata_contig17040:2521..5563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17040.3942.1 ID=mRNA_H-paniculata_contig17040.3942.1|Name=mRNA_H-paniculata_contig17040.3942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3043bp|location=Sequence derived from alignment at H-paniculata_contig17040:2521..5563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCTACTTTGCTTCGTATTGCAAACCTTGCTAGCTTATGTTTGCCATC
TTTGCGACAACTGAAGCACAATAAAGTGATTGATATTCTACTTTGCAGCG
TCCGCGCAGAAAAATTCAATTGAAGCGGAAGTGCGTACACCGTACTTCCG
AAAGCGAAAGCACGAGGCAGGCAGTGCGGTGAAAGATATACTATAGGAAA
GTGGGCAAACCTATACCTGGACGAACGTCTATTGCCCCAGGCCGTACTCG
AGATAACCTAGCGGATACATACCATGCCAAAGGGTGGGCGGCTGGTTTTT
AAGGGGGGTGAGAAGGCCGTCTCTGAGAGGGGTAAGAAAAAGGAAAAGCT
GAAGCGTAAGCGTGAGAAGGCGTTGGCCAAAGCGGAGGCCGAGGGATTAT
TAGCAGGTTCAGCAGCAGAGGTTGAAGGAGAGGCTCGAAGAGATCAGGAA
GAGCCGGAGGAGGAGATGAGACCGATATCGGGCACAGGCAGGGTAACATC
GTCGGGGACAGCGGTGCATGGACACGGCTCTAAGTTTATGGATGAGGTTC
ACTCTGGAGATGCTATTATTATCACCCACCCGACAACGTGAGTGTTTCCT
GTGTAGTAGGCAGTGTTTATTTGTCCAGTCGGTGAGTGTGTCTGCCTGCT
TTCTGAAGGGTGCAGGAGGGTGCGGTGTAATTTGGCAGATGAGGTGGTCT
GTTGGGAACGTCGATTCGTGTTCATGTAGAGGTACGTTTGTATAACCAGA
AGCGTTGTAGAGGTGGGACTGTCACATACGCGGTGACGATAACTGCAATG
AATATCTGACGCTAGCAACTTCTGGGAGAAAATCCGGTTTGCTGAGGAAA
CCAAGGTTCACATGTACACCACACTGCCACTTTCAATTAGTTTAAGTATT
TGCAACTGCTGCAAACACAGAGCAGGACGTTTCCCTCCAATTCCAAGGCT
TAAAAGCGCTGCGCACATCGTAGGCGAAAGAAATCATACCCTCCTTGAAA
ACGAGCTGTTGCCGCAGCTAAACTACGCGTTGAACATGGTCCCTCACATA
GGAGCAGTAGACGTGCAGTCGGGGACAGCATGCAGGTCGGTAGTACCCCG
CAATCGAAACACGGGGCACGGTCTCAGCGAACCGTGCGTTCCATGATCGA
AAAGTCCGTTTGCGAAATCCATCACATTGGGAATTTGTGCGTTCAACTTC
TTGTACTCAAGACTTTTCTTCAAAGATTTCAGGGAAAATGTTAGTACTCG
GCCAAAAAATGCCTGCGGAAGGGAGAGCAATACTCTCGGCGTATTCCGCC
GCCAACTCCTACATTGAGGAGAAAGGGGGGTTGCTGCCCCCACCGCCCGA
TAGTGTAAAGCAAGAACCGAAGCATTACACTCCCAGCTTCGGACCTGGTG
CTCGGAGAGGTGAAGTTGTCCGGAGAAGATAAAAAACAGTGAGCCAGGTT
CATGACACTGCTTCGGAGTTTGGGGAGTTTTTGACCAATCAAAGACGCGG
AAAGCGATACGAGCGAAATTCCCTCCAAAGCAGTGTCATGAGAAACAGCC
AATTAACGCCCTTCCTACAAACAGTGCATCCACCCAAGCCAACCACCGTG
ACTTGAGAAACAGAGCTATTGACCCAACTCTAGAAAACAACTTTTCGGTC
CGCGTGTACAATCAGCAGAAAATCTATTTGAATGCGATCTATGCACTATT
TGAACGTGGCCACCACCAGTATCGCAAGCCAGGGCAGCTGAGACAGGAGT
ACACATATTACGTTCCTCGAGCGGTGGCAGTCAGTTGCTCAGCGTAAACA
GCATGACATCGTAGACTTTCGCCCAGTGACAAAAATAAAAAAAGACAGTA
ATACCGCATGTAGATGGTTTACTGCTGCATGCAATACCATGTATATGGTC
GTGGATATTATGAGTGTGCAGATCTTGAGGAGACGCCAAATCCAAACACA
AAAGCACCTGATATGGAGAACCACGTTCCATCTCTCTGTCCATTGTCTGG
GCTGGTCCTCACAACAAACCGAGTTTGAGGTAAATACCGTGAGGGAATGC
TCTTCGATCCTACCCACAAATGCAGCCAGTGGGGATCTCTAGTGTGGAAT
ACTGGTTTTTGAAACTGGAGTGTTGACGGGCTTCGTGTGTCCGCTAACGC
CCTGAATTCAATCCAATGGCGAGTCACGAAAATGCACGTACAACCCGTCG
GTTTCTATGTGAAGTGCGCTCGTCACAAGCGATTAGGCTTTTACTCTACA
GTGTGAGAGAATGCGCTTCGATCGTGGCCATGGACATGGCCATCCGTGGC
ATAGAGCTTGACAAAGCTATTGATTAAACCTTGTACCACGGGTAGAACAC
CCGATACTGCAACCTCAGCAGTGTATCTTGTGAACATGATGTTTATTGGA
TATATATTTGGCTGAAAGGAGGAGGGAAAGTAGAATTCCCAGCATGGGCG
ATCACCTCTCCAACTATGGTCACACAATGAACTTCTCAGTACCACTCTCG
GGAAAGGTCTTCAACCAATCATATTCCACCACGAAAATTCAAACTGCATG
AGTCATGCAACAATAGCCCGAGTGCCTGCATACAATATTCCGATATGTAC
CGGCTATCAGGCAATATGTGTCCTATGTAACAAGCCAAATGAACGGAAGC
GCTCTTTGAATTTCAGGTTCGACCTCTCTAGTCTTAGCAGAGTTGCGGGA
CGGAGAAGGGAGGAAATTGAAATTAGTTACGATACCTAGCCCATTACATC
GAAAATTTGCCAAGTTGTCTGCGACGGGAAAAAAGGAAACAGCGGCGGCA
ACCATTGGGTGACAGAAACGGGGCCTGGGAGAGAGCGGACTACAGCAGGC
AATCAACAGTGTTTCACGGTGGTCGAGAGTGGAAAAGGGAGCAAGTTGGC
TGGGTTTACTTACGAATATACTACCTCTGTCCCATAAGTCTGGGGAGTTA
TGTGCTTTTAGTTGTTTGCGCATTCAAAGTTTTTCGATCGTCCTATAGTT
GGGTTCGCTGAAAAGATGAAACGCCCACGAAGCTGATACAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17040:2521..5563+

>mRNA_H-paniculata_contig17040.3942.1 ID=mRNA_H-paniculata_contig17040.3942.1|Name=mRNA_H-paniculata_contig17040.3942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig17040:2521..5563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAGGGTGGGCGGCTGGTTTTTAAGGGGGGTGAGAAGGCCGTCTC
TGAGAGGGGTAAGAAAAAGGAAAAGCTGAAGCGTAAGCGTGAGAAGGCGT
TGGCCAAAGCGGAGGCCGAGGGATTATTAGCAGGTTCAGCAGCAGAGGTT
GAAGGAGAGGCTCGAAGAGATCAGGAAGAGCCGGAGGAGGAGATGAGACC
GATATCGGGCACAGGCAGGGTAACATCGTCGGGGACAGCGGTGCATGGAC
ACGGCTCTAAGTTTATGGATGAGGTTCACTCTGGAGATGCTATTATTATC
ACCCACCCGACAACGTGAATGCCAAAGGGTGGGCGGCTGGTTTTTAAGGG
GGGTGAGAAGGCCGTCTCTGAGAGGGGTAAGAAAAAGGAAAAGCTGAAGC
GTAAGCGTGAGAAGGCGTTGGCCAAAGCGGAGGCCGAGGGATTATTAGCA
GGTTCAGCAGCAGAGGTTGAAGGAGAGGCTCGAAGAGATCAGGAAGAGCC
GGAGGAGGAGATGAGACCGATATCGGGCACAGGCAGGGTAACATCGTCGG
GGACAGCGGTGCATGGACACGGCTCTAAGTTTATGGATGAGGTTCACTCT
GGAGATGCTATTATTATCACCCACCCGACAACGTGA
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