mRNA_H-paniculata_contig1704.3940.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1704.3940.1
Unique NamemRNA_H-paniculata_contig1704.3940.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1704.3940.1 vs. uniprot
Match: D7FNL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL3_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.550e-23
Identity = 66/123 (53.66%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:   70 VRRGGRVRKLLYSRLCEDGLGAAAFGGVESGDEDEQESGKECDREADSEKAKVGGTRFFKSNDAPWGSGAQPLVKVELSLSKDRQPLLAEQSALAVVTFVADRHKYSAEQLCNVLVAEGFLCF 438
            VRRG R R+ ++  L ED + AAA GG+ES D    E G           A     RF  S  APWG G +PL+KV LSL +   PL AE+SALAVVTFV DRH+YSAEQL NVL AEGFLC+
Sbjct:  784 VRRGRRARRQVHPSLSEDTM-AAANGGIES-DYRSDEDGXXXXXXXXXGDAPF---RFRTSEVAPWGEGDRPLIKVRLSLLEGDAPLSAERSALAVVTFVFDRHRYSAEQLANVLTAEGFLCY 901
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BLAST of mRNA_H-paniculata_contig1704.3940.1 vs. uniprot
Match: A0A6H5L2K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.600e-21
Identity = 66/133 (49.62%), Postives = 78/133 (58.65%), Query Frame = 1 
Query:   70 VRRGGRVRKLLYSRLCEDGLGAAAFGGVESGDEDEQE-SGKECDREADSEKAKVGGTRFFKSNDAPWGSGAQPLVKVE---------LSLSKDRQPLLAEQSALAVVTFVADRHKYSAEQLCNVLVAEGFLCF 438
            VRRG R R+ ++  L ED + AAA GG+ES      E SG+                RF  S  APWG G +PL+KVE         LSL +   PL AE+SALAVVTFV DRH+YSAEQL NVL AEGFLC+
Sbjct:  790 VRRGRRARRQVHPSLSEDTM-AAANGGIESDYGSGAEGSGEXXXXXXXXXXXXDAPFRFRTSEFAPWGEGDRPLIKVETALMEAKVRLSLLEGDAPLSAERSALAVVTFVFDRHRYSAEQLANVLTAEGFLCY 921
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1704.3940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNL3_ECTSI1.550e-2353.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2K3_9PHAE5.600e-2149.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1704contigH-paniculata_contig1704:5234..6157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005050.1
Exons2
Model size443
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.0741851-CDS-H-paniculata_contig1704:5233..55271622929347.0741851-CDS-H-paniculata_contig1704:5233..5527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1704 5234..5527 +
1691480824.5091784-CDS-H-paniculata_contig1704:5233..55271691480824.5091784-CDS-H-paniculata_contig1704:5233..5527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1704 5234..5527 +
1622929347.0887115-CDS-H-paniculata_contig1704:6010..61571622929347.0887115-CDS-H-paniculata_contig1704:6010..6157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1704 6011..6157 +
1691480824.5203443-CDS-H-paniculata_contig1704:6010..61571691480824.5203443-CDS-H-paniculata_contig1704:6010..6157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1704 6011..6157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1704.3940.1prot_H-paniculata_contig1704.3940.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1704 5234..6157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1704.3940.1

>prot_H-paniculata_contig1704.3940.1 ID=prot_H-paniculata_contig1704.3940.1|Name=mRNA_H-paniculata_contig1704.3940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
QLNAPENPQQQQKNTADGWVDSGVRRGGRVRKLLYSRLCEDGLGAAAFGG
VESGDEDEQESGKECDREADSEKAKVGGTRFFKSNDAPWGSGAQPLVKVE
LSLSKDRQPLLAEQSALAVVTFVADRHKYSAEQLCNVLVAEGFLCFC
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mRNA from alignment at H-paniculata_contig1704:5234..6157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1704.3940.1 ID=mRNA_H-paniculata_contig1704.3940.1|Name=mRNA_H-paniculata_contig1704.3940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=924bp|location=Sequence derived from alignment at H-paniculata_contig1704:5234..6157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTCAACGCCCCCGAGAACCCCCAGCAGCAGCAGAAAAATACTGCCGA
CGGATGGGTGGATAGCGGTGTGCGCCGGGGCGGGCGAGTCCGCAAGCTAC
TGTACTCGCGGCTTTGCGAGGATGGTCTGGGAGCAGCGGCCTTCGGAGGA
GTGGAGAGTGGTGATGAGGACGAGCAAGAGAGTGGGAAGGAGTGCGACAG
GGAAGCCGACAGCGAGAAGGCGAAGGTGGGAGGAACGCGATTCTTCAAGA
GCAACGACGCCCCCTGGGGCTCAGGAGCACAGCCTCTTGTCAAGGTCAGT
TGGCTCTTTGTTTTGGCGGGGCGGGGGGCGGGGGACAGGATGGCTGCTAG
CGGTGGTCGCGGTCGGGGGGAGAGGAGCGGGTGGAGTGGGGGGGAGGGGG
GGCACGGGGGCAATAGATATCACGTACGGTATATCCGTTTTTGTCTTTGT
TTTTGATGATGGAAAACGGTGGAATTGTGAACAACTGAGTGGCATGTTTT
CAGTCTTTTTTCTAGGTGTTACCAGTCATCATCTGCGCAATTATTCTCAA
AGCCACTCCACGATACCGGTCCTATGCAAAACTGTGGGGCAGTGGCCCCG
GACGAAGGCTAGGTTGGGTTCGCGTTGCAGGATGATCCCAACGAATCCTG
ATTGAGGTGACAAATTGCCTGTTCCCATCCCCCTTGAGGGATATTTGATG
CAAGATAAACTTGCTTCTCCCCCTGCCGCCCCTCCCCTCCCTCCCCCCCG
GGACTTTTTCCTCTCTTACGCGCACAGGTGGAATTGAGTCTATCGAAGGA
CAGGCAGCCCCTGTTGGCGGAGCAGAGCGCGCTTGCCGTGGTGACCTTTG
TAGCCGACCGACACAAGTACTCCGCAGAGCAGCTGTGCAATGTGCTGGTG
GCGGAAGGATTTCTCTGTTTCTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1704:5234..6157+

>mRNA_H-paniculata_contig1704.3940.1 ID=mRNA_H-paniculata_contig1704.3940.1|Name=mRNA_H-paniculata_contig1704.3940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig1704:5234..6157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTCAACGCCCCCGAGAACCCCCAGCAGCAGCAGAAAAATACTGCCGA
CGGATGGGTGGATAGCGGTGTGCGCCGGGGCGGGCGAGTCCGCAAGCTAC
TGTACTCGCGGCTTTGCGAGGATGGTCTGGGAGCAGCGGCCTTCGGAGGA
GTGGAGAGTGGTGATGAGGACGAGCAAGAGAGTGGGAAGGAGTGCGACAG
GGAAGCCGACAGCGAGAAGGCGAAGGTGGGAGGAACGCGATTCTTCAAGA
GCAACGACGCCCCCTGGGGCTCAGGAGCACAGCCTCTTGTCAAGCAGCTC
AACGCCCCCGAGAACCCCCAGCAGCAGCAGAAAAATACTGCCGACGGATG
GGTGGATAGCGGTGTGCGCCGGGGCGGGCGAGTCCGCAAGCTACTGTACT
CGCGGCTTTGCGAGGATGGTCTGGGAGCAGCGGCCTTCGGAGGAGTGGAG
AGTGGTGATGAGGACGAGCAAGAGAGTGGGAAGGAGTGCGACAGGGAAGC
CGACAGCGAGAAGGCGAAGGTGGGAGGAACGCGATTCTTCAAGAGCAACG
ACGCCCCCTGGGGCTCAGGAGCACAGCCTCTTGTCAAGGTGGAATTGAGT
CTATCGAAGGACAGGCAGCCCCTGTTGGCGGAGCAGAGCGCGCTTGCCGT
GGTGACCTTTGTAGCCGACCGACACAAGTACTCCGCAGAGCAGCTGTGCA
ATGTGCTGGTGGCGGAAGGATTTCTCTGTTTCTGCGTGGAATTGAGTCTA
TCGAAGGACAGGCAGCCCCTGTTGGCGGAGCAGAGCGCGCTTGCCGTGGT
GACCTTTGTAGCCGACCGACACAAGTACTCCGCAGAGCAGCTGTGCAATG
TGCTGGTGGCGGAAGGATTTCTCTGTTTCTGC
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