mRNA_H-paniculata_contig1704.3941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1704.3941.1
Unique NamemRNA_H-paniculata_contig1704.3941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1704.3941.1 vs. uniprot
Match: D7FNL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL3_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 7.970e-27
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 3 
Query:    3 WQLLQAKEERGLFDFSGSKSDDLESLLQVVCLPNLSRGVVFDVQEDAFDRDRLQEANLQRGYLVGPQFEDEMV 221
            W L+Q KE++GL DFSGSKSDDLE  LQVVCLP L+RGVV DV+EDAF+ D LQEANL+RGY VGP+ EDEMV
Sbjct: 1036 WALMQEKEDKGLADFSGSKSDDLEERLQVVCLPKLTRGVVDDVKEDAFEMDLLQEANLKRGYYVGPRSEDEMV 1108
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BLAST of mRNA_H-paniculata_contig1704.3941.1 vs. uniprot
Match: A0A6H5L2K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.600e-26
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 3 
Query:    3 WQLLQAKEERGLFDFSGSKSDDLESLLQVVCLPNLSRGVVFDVQEDAFDRDRLQEANLQRGYLVGPQFEDEM 218
            W L+Q KE++GL DFSGSKSD+LE  LQVVCLP L+RGVV DV+EDAF+ D LQEANL+RGY VGP+ EDEM
Sbjct: 1056 WALMQEKEDKGLADFSGSKSDELEERLQVVCLPKLTRGVVDDVKEDAFEMDLLQEANLKRGYYVGPRSEDEM 1127
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1704.3941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNL3_ECTSI7.970e-2773.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2K3_9PHAE9.600e-2672.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1704contigH-paniculata_contig1704:12005..13593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.025707-CDS-H-paniculata_contig1704:12004..121411622929347.025707-CDS-H-paniculata_contig1704:12004..12141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1704 12005..12141 +
1691480824.4886687-CDS-H-paniculata_contig1704:12004..121411691480824.4886687-CDS-H-paniculata_contig1704:12004..12141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1704 12005..12141 +
1622929347.0389543-CDS-H-paniculata_contig1704:13508..135931622929347.0389543-CDS-H-paniculata_contig1704:13508..13593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1704 13509..13593 +
1691480824.4988961-CDS-H-paniculata_contig1704:13508..135931691480824.4988961-CDS-H-paniculata_contig1704:13508..13593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1704 13509..13593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1704.3941.1prot_H-paniculata_contig1704.3941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1704 12005..13593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1704.3941.1

>prot_H-paniculata_contig1704.3941.1 ID=prot_H-paniculata_contig1704.3941.1|Name=mRNA_H-paniculata_contig1704.3941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
GGSCCRRKRRGGSLTSQGQSQTTWRACCRWFACQIFPGEWCSMCKRTPST
GTVSRRPICRGGISSAPSLRTRW*
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mRNA from alignment at H-paniculata_contig1704:12005..13593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1704.3941.1 ID=mRNA_H-paniculata_contig1704.3941.1|Name=mRNA_H-paniculata_contig1704.3941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1589bp|location=Sequence derived from alignment at H-paniculata_contig1704:12005..13593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGCAGCTGCTGCAGGCGAAAGAGGAGAGGGGGCTCTTTGACTTCTCA
GGGTCAAAGTCAGACGACCTGGAGAGCTTGCTGCAGGTGGTTTGCCTGCC
AAATCTTTCCAGGGGAGTGGTGTTCGATGTGCAAGAGGTAAGTAAACCAT
ACCTCGGATGAAGGTCGATGAAGGTCATATAAAAATTGTCGCGAATTTTG
AAACATGATTATTATGACAGCACGACAATAATTGGCGCTTTCCGAATTCC
GTTCGAATCGATAGCTGAAGGTCCGTCAAGGTTTGATTCTTGAGTATGAG
CGTACCTCCACATATTTTTCTACTTTGGAGCATGAAGTTCGGCTAAAGGT
TGAAGATTCTATGAAGCTGTTTTTCCTTTAAAATACAAACCTTCGTCCGA
GCTATGCAGTAAGTGCCGTTGGGTTGAGTATAACGCCAACGTAATTAATT
TGCAAGGTGGAGACACGGGTTTGGTTCATCAAAGGACGAAGTCATTACCG
CGTGCTCATTTCGGACATAAAGTGGAAATAGGGCAGGCATAGGAAAAAAA
CGTGAGTACTGGTTGGTGCTGCTAGTTGATGCTGCTCTATCAAACTCTCA
TGATGTGGCACAATCGTCTACCGTAGGCGTCCACCCTGTGGCGTGTAGAG
CATGACGATGTGCCGAAAAAAATGCCCATTCAATTAATGTCCGAAAAACA
ACTGGTGGGAGAAAACAGGTGAGTTGACGAGTGATTCTGAGTCCCTCCAA
AAAAGGAGGCGTTGTGGTACATTTGTATCGTTCAGGGCTATTTTTGTGTG
GTGTATTACGCTACAGTGCATGTCATATTCTAATGTGTGCGTGTATGTGT
TGTGTGTGTGTGTCATACTCTGGTCTCGTGTATGTCGAACTCCCAATTTT
GGGGTTCAGCTGTTGCATATTGGCCATGGCCCAAAGCCTTCCTGGCGCAA
CACGTACACACAGTGGTGCACTCTTTTGGATCGTTCTGGGCGTACATTAT
ATGAAGCGTTTTTGAGGAGGCTTTGTTGAAACTGCATAGAGCTACCGGCA
CATACGTATTTTCTTTGTTTATAATGTTTTTCTCAGACACGTTCCTACTG
GTAGCAACAGGAGAGACGGGCGAACGAGCGTGGTGCGTGAAAGATTTTTG
AAAGTTTGACTAGCAACTAACCAATTCTGCACGAAAGTCAGACGACGTTA
CAGGTTGTATGAGTCATTGTCCATTCATCGTGTCGTTTTAAAAAAAAATA
ATAATCTCACTTGCGGAGTGTTTTTGTGAGTTGATTTATTTCTCGTTCAC
ATACATTGAAAAACTTGACTGTTTGTGAGGTGATACCACACCAGGGTTTG
TCGAGTGAACATAGTCTTTTTTGTCGCTTCAAGCAACTGATGACTTACGT
ACATTGAATTTGTTTGGTGCGACAAAGTGTACATGACTAATATATATATA
TGTTTTTTTCCAAAATTATCAAATGTTTTGTGTGCGTGCACATGTGTGTG
TCAGGACGCCTTCGACAGGGACCGTCTCCAGGAGGCCAATCTGCAGAGGG
GGTATCTCGTCGGCCCCCAGTTTGAGGACGAGATGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1704:12005..13593+

>mRNA_H-paniculata_contig1704.3941.1 ID=mRNA_H-paniculata_contig1704.3941.1|Name=mRNA_H-paniculata_contig1704.3941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig1704:12005..13593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGCAGCTGCTGCAGGCGAAAGAGGAGAGGGGGCTCTTTGACTTCTCA
GGGTCAAAGTCAGACGACCTGGAGAGCTTGCTGCAGGTGGTTTGCCTGCC
AAATCTTTCCAGGGGAGTGGTGTTCGATGTGCAAGAGGGTGGCAGCTGCT
GCAGGCGAAAGAGGAGAGGGGGCTCTTTGACTTCTCAGGGTCAAAGTCAG
ACGACCTGGAGAGCTTGCTGCAGGTGGTTTGCCTGCCAAATCTTTCCAGG
GGAGTGGTGTTCGATGTGCAAGAGGACGCCTTCGACAGGGACCGTCTCCA
GGAGGCCAATCTGCAGAGGGGGTATCTCGTCGGCCCCCAGTTTGAGGACG
AGATGGTAAGACGCCTTCGACAGGGACCGTCTCCAGGAGGCCAATCTGCA
GAGGGGGTATCTCGTCGGCCCCCAGTTTGAGGACGAGATGGTAA
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