mRNA_H-paniculata_contig17034.3939.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: D7FK26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK26_ECTSI) HSP 1 Score: 174 bits (441), Expect = 6.210e-52 Identity = 73/123 (59.35%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 1 VDTLSELARNNNDRVGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALANR 369
V+ L ++R+ DRV +CE+GFN GHSSLNWLL+S PS +++AFDLGEH Y+ H++DF+Q +FP RLE+++GDS TIPAY E AGR+P+ CNI F+DGDHS++GAYADLV+F A+A+R
Sbjct: 165 VEALGAVSRDGGDRVKKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMRHALDFLQAMFPGRLEVLIGDSSVTIPAYVVAEAAAGREPQGCNILFVDGDHSEDGAYADLVNFRAMASR 287
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: D7FK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK45_ECTSI) HSP 1 Score: 174 bits (440), Expect = 9.470e-49 Identity = 75/123 (60.98%), Postives = 98/123 (79.67%), Query Frame = 1
Query: 1 VDTLSELARNNNDRVGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALANR 369
V+ L + R+ DRV +CE+GFN GHSSLNWLLNSRPS +V+AFDLGE+ Y+ H++DF+Q +FP RLE+++G S TIPAY E AGRD RTCN+ F+DGDH++EGAYADL++F ALA+R
Sbjct: 521 VEALGAVLRDGGDRVEKICEVGFNAGHSSLNWLLNSRPSTKVLAFDLGEYEYMRHALDFLQMVFPGRLEVLIGHSTVTIPAYAVVEEAAGRDTRTCNVLFVDGDHTEEGAYADLINFRALASR 643
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: D8LQ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ26_ECTSI) HSP 1 Score: 172 bits (435), Expect = 7.620e-48 Identity = 75/123 (60.98%), Postives = 95/123 (77.24%), Query Frame = 1
Query: 1 VDTLSELARNNNDRVGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALANR 369
V+ L + R+ DRV T+CE+GFN GHSSLNWLLNS PS RV+AFDLG H YV + DF+Q +FP RLE++LGDS ET+PA+T + AGRDPR C++ F+DG+HS+EG YADLV+F A NR
Sbjct: 563 VEALGAMPRDGGDRVRTICEVGFNAGHSSLNWLLNSHPSTRVLAFDLGTHEYVGAARDFLQAVFPGRLELVLGDSSETVPAHTAADAAAGRDPRVCDLVFVDGNHSEEGTYADLVNFAAKTNR 685
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: A0A6H5K0Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q1_9PHAE) HSP 1 Score: 148 bits (374), Expect = 4.840e-39 Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 37 DRVGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALANR 369
++V + + +GGHSSLNWLLNS PS RV+AFDLG H YV + DF+Q +FP RLE++LGDS ET+PA+T + AGRDPR C++ F+DGDHS+EG YADLV+F A NR
Sbjct: 670 EKVEALGAMPRDGGHSSLNWLLNSHPSTRVLAFDLGMHQYVGAARDFLQAVFPGRLELVLGDSSETVPAHTAADAAAGRDPRVCDLVFVDGDHSEEGTYADLVNFAAKTNR 780
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: A0A6H5JH46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH46_9PHAE) HSP 1 Score: 140 bits (352), Expect = 4.500e-36 Identity = 68/144 (47.22%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 VDTLSELARNNNDRVGTVCEI---------------------GFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALANR 369
V+ L L R+ DRV +CE+ GFN GHSSLNWLL+S PS +++AFDLGEH Y+ H++D++Q +++GDS TIPAY E AGR+P+ CNI F+DGDHS+ GAYADLV+F LA+R
Sbjct: 692 VEALGALWRDGGDRVKKICEVNEEPSFLMRFDLGDLIFGIKVGFNAGHSSLNWLLHSHPSTKILAFDLGEHQYMKHALDYMQ--------VLIGDSSVTIPAYVVAEDAAGREPQACNILFVDGDHSEGGAYADLVNFRVLASR 827
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: A0A7S2BCF4_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2BCF4_9DINO) HSP 1 Score: 101 bits (251), Expect = 1.950e-24 Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 43 VGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALA 363
V T+CE+GFN GHS+ +L N+ P A+V +FD+G+ PY + ++ LFPDR E I G S++T+P + ++ R C+I +DGDHS EG +ADL +F LA
Sbjct: 1 VKTICEVGFNAGHSAAVFL-NANPEAKVYSFDIGQFPYTRGNAQLMKELFPDRFEYISGPSEKTVPEFHRQ-----RPDVKCDIISVDGDHSTEGTFADLANFRELA 101
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: A0A812JSN7_9DINO (Tube1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812JSN7_9DINO) HSP 1 Score: 100 bits (250), Expect = 1.360e-23 Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 43 VGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALAN 366
V T+CE+GFN GHS+L WL S SA+V++FDLG+HPY + ++ + FP+RLE+I GDS T+P + +R+ C + FIDG HS + A DL + LAN
Sbjct: 97 VKTICEVGFNAGHSALRWLTYS--SAKVLSFDLGDHPYSRPAAMWLASQFPERLELIWGDSLATVPEFHRRKPGV-----QCELIFIDGGHSYDCAIRDLKNLAGLAN 197
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: A0A812Z7J0_9DINO (CardB protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Z7J0_9DINO) HSP 1 Score: 103 bits (258), Expect = 2.180e-23 Identity = 52/122 (42.62%), Postives = 78/122 (63.93%), Query Frame = 1
Query: 1 VDTLSELARNNNDRVGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALAN 366
++ ++ LA + V T+CE+GFNGGHS+L WL S SA+V++FDLG+HPY + ++ + FP+RLE+I GDS T+P + +++ C + FIDG HS + A DL + ALAN
Sbjct: 576 IEVMNGLAAG--EGVRTICEVGFNGGHSALRWLTYS--SAKVLSFDLGDHPYSRPAAMWLSSQFPERLELIWGDSLATVPEFHRQKPGV-----QCELIFIDGGHSYDCAIRDLKNLAALAN 688
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: A0A7J6M4C8_PEROL (Uncharacterized protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M4C8_PEROL) HSP 1 Score: 99.0 bits (245), Expect = 1.110e-22 Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 43 VGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALAN 366
+ T+CE GFN GHS+ +L+ + PSARVI FDLG+ Y H++ LFPDR E +LGDS +P + C++ F+DG H+ EGAY D+ +F +AN
Sbjct: 76 ISTICETGFNAGHSAAVFLI-ANPSARVITFDLGQFEYTMHNLRLAAQLFPDRFEYVLGDSYYALPDIIDKYPDL-----RCDLVFVDGSHTAEGAYNDIKNFHKIAN 177
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Match: A0A1Q9CFG8_SYMMI (Tubulin epsilon chain n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CFG8_SYMMI) HSP 1 Score: 100 bits (250), Expect = 2.750e-22 Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 43 VGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHPYVHHSVDFVQTLFPDRLEIILGDSKETIPAYTQRERQAGRDPRTCNIAFIDGDHSQEGAYADLVSFEALAN 366
V T+CE+GFN GHS+L WL S SA+V++FDLG+HPY + ++ + FP+RLE+I GDS T+P + +R+ C + FIDG HS + A DL + LAN
Sbjct: 615 VKTICEVGFNAGHSALRWLTYS--SAKVLSFDLGDHPYSRPAAMWLASQFPERLELIWGDSLATVPEFHRRKPGV-----QCELIFIDGGHSYDCAIRDLKNLAGLAN 715 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17034.3939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17034.3939.1 >prot_H-paniculata_contig17034.3939.1 ID=prot_H-paniculata_contig17034.3939.1|Name=mRNA_H-paniculata_contig17034.3939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp VDTLSELARNNNDRVGTVCEIGFNGGHSSLNWLLNSRPSARVIAFDLGEHback to top mRNA from alignment at H-paniculata_contig17034:457..3405+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17034.3939.1 ID=mRNA_H-paniculata_contig17034.3939.1|Name=mRNA_H-paniculata_contig17034.3939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2949bp|location=Sequence derived from alignment at H-paniculata_contig17034:457..3405+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17034:457..3405+ >mRNA_H-paniculata_contig17034.3939.1 ID=mRNA_H-paniculata_contig17034.3939.1|Name=mRNA_H-paniculata_contig17034.3939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig17034:457..3405+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |