mRNA_H-paniculata_contig1703.3936.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1703.3936.1
Unique NamemRNA_H-paniculata_contig1703.3936.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1703.3936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1703contigH-paniculata_contig1703:23682..24262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size581
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.6168876-UTR-H-paniculata_contig1703:23681..239081622929346.6168876-UTR-H-paniculata_contig1703:23681..23908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1703 23682..23908 +
1691480824.3433363-UTR-H-paniculata_contig1703:23681..239081691480824.3433363-UTR-H-paniculata_contig1703:23681..23908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1703 23682..23908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.709311-CDS-H-paniculata_contig1703:23908..242621622929346.709311-CDS-H-paniculata_contig1703:23908..24262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1703 23909..24262 +
1691480824.3521068-CDS-H-paniculata_contig1703:23908..242621691480824.3521068-CDS-H-paniculata_contig1703:23908..24262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1703 23909..24262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1703.3936.1prot_H-paniculata_contig1703.3936.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1703 23909..24262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1703.3936.1

>prot_H-paniculata_contig1703.3936.1 ID=prot_H-paniculata_contig1703.3936.1|Name=mRNA_H-paniculata_contig1703.3936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MFVCKTNALTTELSQHTTTLYPGGEGARNRVGTRQNCYPHSRSSLFIPSR
GHRHLRITLFYYCYCAISSRHHTAFAAHMSPLKQYVKRLKNNISSKYTVE
MQTNKLIISAFCSTFDVP
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mRNA from alignment at H-paniculata_contig1703:23682..24262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1703.3936.1 ID=mRNA_H-paniculata_contig1703.3936.1|Name=mRNA_H-paniculata_contig1703.3936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=581bp|location=Sequence derived from alignment at H-paniculata_contig1703:23682..24262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCCGAAACCTTTGTGAATTCTCTGAACCTGGTACAGCGCAGTACGCAC
TGCAGTGTAGACAGGTTCTACCGGAAAGCGCCACAGTAGGGTTTAGGCAG
CTAATATACTTCAGCGACTAGTGTAACTTGTTTTTCCATTAATCCCCGGT
GCGAAGATTACATCAACATCAATGTGCGGACTTGCAACAAAAAACAACTC
GCGAGGTTCCTCACGTTGGACAGGATTATGTTTGTTTGCAAAACGAATGC
GCTCACCACAGAGCTTTCCCAGCATACGACTACATTATATCCTGGGGGGG
AAGGAGCAAGAAACCGAGTCGGAACTCGCCAAAACTGCTACCCGCATTCA
CGTTCGTCATTGTTTATTCCCTCGAGGGGGCATCGACATTTGCGCATCAC
GTTATTTTATTACTGCTACTGTGCTATTTCTTCAAGGCACCACACGGCGT
TCGCAGCACACATGAGTCCGTTGAAGCAGTATGTTAAAAGATTGAAAAAT
AATATCTCAAGCAAATACACTGTCGAAATGCAAACAAACAAGCTCATCAT
CTCCGCATTTTGTTCTACTTTTGACGTGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1703:23682..24262+

>mRNA_H-paniculata_contig1703.3936.1 ID=mRNA_H-paniculata_contig1703.3936.1|Name=mRNA_H-paniculata_contig1703.3936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig1703:23682..24262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGTTTGCAAAACGAATGCGCTCACCACAGAGCTTTCCCAGCATAC
GACTACATTATATCCTGGGGGGGAAGGAGCAAGAAACCGAGTCGGAACTC
GCCAAAACTGCTACCCGCATTCACGTTCGTCATTGTTTATTCCCTCGAGG
GGGCATCGACATTTGCGCATCACGTTATTTTATTACTGCTACTGTGCTAT
TTCTTCAAGGCACCACACGGCGTTCGCAGCACACATGAGTCCGTTGAAGC
AGTATGTTAAAAGATTGAAAAATAATATCTCAAGCAAATACACTGTCGAA
ATGCAAACAAACAAGCTCATCATCTCCGCATTTTGTTCTACTTTTGACGT
GCCCATGTTTGTTTGCAAAACGAATGCGCTCACCACAGAGCTTTCCCAGC
ATACGACTACATTATATCCTGGGGGGGAAGGAGCAAGAAACCGAGTCGGA
ACTCGCCAAAACTGCTACCCGCATTCACGTTCGTCATTGTTTATTCCCTC
GAGGGGGCATCGACATTTGCGCATCACGTTATTTTATTACTGCTACTGTG
CTATTTCTTCAAGGCACCACACGGCGTTCGCAGCACACATGAGTCCGTTG
AAGCAGTATGTTAAAAGATTGAAAAATAATATCTCAAGCAAATACACTGT
CGAAATGCAAACAAACAAGCTCATCATCTCCGCATTTTGTTCTACTTTTG
ACGTGCCC
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