mRNA_H-paniculata_contig17016.3933.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17016.3933.1
Unique NamemRNA_H-paniculata_contig17016.3933.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: D8LB04_ECTSI (Phosphoinositide phospholipase C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB04_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 5.990e-39
Identity = 60/84 (71.43%), Postives = 75/84 (89.29%), Query Frame = 1
Query:   13 QVISARQLPKPGGAQKGEIIDPYVMLQLHGVPMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDADDFV 264
            QV+S RQLPKPGGAQ+GEIIDPYV++ ++G+P DCKKAKSTK + DNGFNPIW+ TSTF++ MPE+ALLM TVMDKD++ DDF+
Sbjct:  112 QVVSGRQLPKPGGAQQGEIIDPYVVVSVNGLPSDCKKAKSTKVIQDNGFNPIWNETSTFEITMPEVALLMFTVMDKDVNKDDFI 195          
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: A0A6H5KNM2_9PHAE (Phosphoinositide phospholipase C n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM2_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.000e-38
Identity = 61/84 (72.62%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   13 QVISARQLPKPGGAQKGEIIDPYVMLQLHGVPMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDADDFV 264
            QV+S RQLPKPGGAQKGEIIDPYV++ +HG+P DCKKAKSTK + DNGFNPIW+ TSTF++ MPE+ALLM TV DKD++ DDF+
Sbjct:  294 QVVSGRQLPKPGGAQKGEIIDPYVVVSVHGLPSDCKKAKSTKVIQDNGFNPIWNETSTFEITMPEMALLMFTVKDKDVNKDDFI 377          
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: A0A7S2V3E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3E7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.930e-31
Identity = 53/84 (63.10%), Postives = 69/84 (82.14%), Query Frame = 1
Query:   13 QVISARQLPKPGGAQKGEIIDPYVMLQLHGVPMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDADDFV 264
            QV+SA+QLPKPGGA KGE+IDPYV++Q+HGVP+D  + ++T  V DNGFNP+W  T +F V  PELA+L +TV D+DLDADDF+
Sbjct:   71 QVLSAQQLPKPGGAHKGEVIDPYVVVQIHGVPVDNAQFRTTT-VQDNGFNPVWDKTFSFKVACPELAILDMTVWDEDLDADDFI 153          
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: A0A0B6YRR2_9EUPU (C2 domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YRR2_9EUPU)

HSP 1 Score: 98.6 bits (244), Expect = 1.210e-24
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 VCCTQVISARQLPKPGGAQKGEIIDPYVMLQLHGVPMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDADDFV 264
            V C Q+IS  Q+PKP  + KGE+IDP+V +++ GVP D ++ + TK V++NGFNP WS T TF + +PELALL +TV D D   DDF+
Sbjct:    4 VFCLQIISGYQIPKPNDSTKGEVIDPFVKVEIFGVPSDVREYR-TKVVENNGFNPKWSETFTFKIRVPELALLRITVKDDDPGRDDFI 90          
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: A0A7S3XN70_HETAK (Phosphoinositide phospholipase C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN70_HETAK)

HSP 1 Score: 103 bits (257), Expect = 6.420e-24
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   16 VISARQLPKPGGAQKGEIIDPYVMLQLHGVPMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDADDFV 264
            VIS  Q PKP GA KGE+IDPYV++++ GV  D ++ K T  +DDNGFNPI+  T  FD+  PELA+L L VMDKDLDADDF+
Sbjct:  437 VISGSQFPKPEGAHKGEVIDPYVVVEVTGVAPDRRQCK-TAVIDDNGFNPIFDETFEFDICQPELAILNLCVMDKDLDADDFI 518          
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: A0A0D2U0B6_CAPO3 (Phosphoinositide phospholipase C n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U0B6_CAPO3)

HSP 1 Score: 99.0 bits (245), Expect = 3.100e-22
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   13 QVISARQLPKPGGAQKGEIIDPYVMLQLHGVPMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDADDFV 264
            ++IS +QLPKP    KGEIIDPYV++++ G+P D K  + TK +DDNGFNP WS T TFD+   ELA+L   V DKD+++DDF+
Sbjct:  781 KIISGQQLPKPDRQTKGEIIDPYVVVEVAGIPADQKTVR-TKVIDDNGFNPEWSETFTFDLRFAELAILRFVVYDKDVNSDDFI 863          
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: A0A369RZV6_9METZ (Phosphoinositide phospholipase C n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RZV6_9METZ)

HSP 1 Score: 97.1 bits (240), Expect = 1.460e-21
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   13 QVISARQLPKPGGAQKGEIIDPYVMLQLHGVPMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKD-LDADDFV 264
            +VIS +Q+PKP  + KGEIIDPYV +Q+HG+P D +  KSTK + +NGFNP W+ T  F V+ PELA++   V D D L ADDF+
Sbjct:  644 KVISGQQIPKPDKSTKGEIIDPYVKIQIHGIPAD-RSTKSTKTISNNGFNPRWNQTLRFKVINPELAMVRFCVYDSDALSADDFI 727          
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: UPI000719E08A (1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like isoform X1 n=5 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E08A)

HSP 1 Score: 96.3 bits (238), Expect = 2.720e-21
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   13 QVISARQLPKPGGAQKGEIIDPYVMLQLHGVPMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDA-DDFV 264
            ++IS ++LPKPGG+ KGE+IDPYV++ +HGVP D +K K TK + DNGFNP+W  T    + MPELAL+  TV D D+ + +DFV
Sbjct:  696 KIISGQRLPKPGGSMKGEVIDPYVVVSVHGVPPDNQKVK-TKIIMDNGFNPLWDETFKLKIQMPELALVRFTVYDYDVRSKNDFV 779          
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: A0A7S3H7R2_9STRA (Phosphoinositide phospholipase C n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7R2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.480e-20
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   16 VISARQLPKPGGAQKGEIIDPYVMLQLHGV-PMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDADDFV 264
            VISA  LPKPGGAQKGEIIDP+V + LHG  P D  +A+ T+ + DNGFNP+W+ T TFDV  P+L+ L   V D+D+   DFV
Sbjct:  683 VISACHLPKPGGAQKGEIIDPFVAVYLHGPSPADTFEAR-TRTIHDNGFNPVWNQTFTFDVRRPDLSYLTFHVNDEDVLRSDFV 765          
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Match: A0A0S7IXA6_9TELE (PLCH2 (Fragment) n=4 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7IXA6_9TELE)

HSP 1 Score: 86.3 bits (212), Expect = 7.920e-20
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   13 QVISARQLPKPGGAQ---KGEIIDPYVMLQLHGVPMDCKKAKSTKHVDDNGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDADDFV 264
            ++IS +QLPKP  +    +GEIIDP+V +++ G+P+DC K + T+ VDDNGFNP+W  T  F ++MP++AL+   V D D    DF+
Sbjct:   11 KIISGQQLPKPKDSMFGDRGEIIDPFVEVEIIGLPVDCSK-QQTRVVDDNGFNPMWEETLVFSILMPQIALVRFQVWDHDPIGRDFI 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17016.3933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB04_ECTSI5.990e-3971.43Phosphoinositide phospholipase C n=1 Tax=Ectocarpu... [more]
A0A6H5KNM2_9PHAE4.000e-3872.62Phosphoinositide phospholipase C n=1 Tax=Ectocarpu... [more]
A0A7S2V3E7_9STRA3.930e-3163.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0B6YRR2_9EUPU1.210e-2452.27C2 domain-containing protein (Fragment) n=1 Tax=Ar... [more]
A0A7S3XN70_HETAK6.420e-2460.24Phosphoinositide phospholipase C n=1 Tax=Heterosig... [more]
A0A0D2U0B6_CAPO33.100e-2254.76Phosphoinositide phospholipase C n=1 Tax=Capsaspor... [more]
A0A369RZV6_9METZ1.460e-2154.12Phosphoinositide phospholipase C n=1 Tax=Trichopla... [more]
UPI000719E08A2.720e-2154.121-phosphatidylinositol 4,5-bisphosphate phosphodie... [more]
A0A7S3H7R2_9STRA4.480e-2057.14Phosphoinositide phospholipase C n=2 Tax=Spumella ... [more]
A0A0S7IXA6_9TELE7.920e-2045.98PLCH2 (Fragment) n=4 Tax=Poeciliinae TaxID=586240 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17016contigH-paniculata_contig17016:95..1293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.3e-30
Seed eggNOG ortholog2880.D8LB04
KEGG rclassRC00017,RC00425
KEGG koko:K05857
KEGG ReactionR03332,R03435,R10952
KEGG Pathwayko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG ModuleM00130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol phospholipase C activity
EggNOG OGsKOG0169@1,KOG0169@2759
EC3.1.4.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.324318-CDS-H-paniculata_contig17016:94..2861622929346.324318-CDS-H-paniculata_contig17016:94..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17016 95..286 +
1691480824.2285025-CDS-H-paniculata_contig17016:94..2861691480824.2285025-CDS-H-paniculata_contig17016:94..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17016 95..286 +
1622929346.3406522-CDS-H-paniculata_contig17016:1221..12931622929346.3406522-CDS-H-paniculata_contig17016:1221..1293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17016 1222..1293 +
1691480824.2400475-CDS-H-paniculata_contig17016:1221..12931691480824.2400475-CDS-H-paniculata_contig17016:1221..1293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17016 1222..1293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17016.3933.1prot_H-paniculata_contig17016.3933.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17016 95..1293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17016.3933.1

>prot_H-paniculata_contig17016.3933.1 ID=prot_H-paniculata_contig17016.3933.1|Name=mRNA_H-paniculata_contig17016.3933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
VCCTQVISARQLPKPGGAQKGEIIDPYVMLQLHGVPMDCKKAKSTKHVDD
NGFNPIWSSTSTFDVVMPELALLMLTVMDKDLDADDFV
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mRNA from alignment at H-paniculata_contig17016:95..1293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17016.3933.1 ID=mRNA_H-paniculata_contig17016.3933.1|Name=mRNA_H-paniculata_contig17016.3933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1199bp|location=Sequence derived from alignment at H-paniculata_contig17016:95..1293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGTTGCACACAGGTGATCAGCGCTAGACAACTTCCGAAACCGGGGGG CGCGCAAAAGGGCGAGATTATCGACCCTTATGTCATGCTCCAGCTGCATG GGGTTCCCATGGACTGCAAGAAGGCGAAGAGCACTAAGCACGTCGACGAC AACGGCTTCAACCCCATCTGGAGCTCAACCAGCACGTTTGACGTGAGGAA TATGTAGTCACTGCAAAAGTCGCTCGTTGGTAAATAAACGTTTCACTGTG ATCGGTTAATCTGCTGGAGCCGTATTTACGCACTTGGTCGAACACAACCG TTGATGTATATTATGGTTCACGCTTAATTGTGCCACCCCGGCGCGAGCAG GACCAACGCTCGTACTAGTGGCGACCCTAGCCCTAATGAACCCACCCCCT GGGTACGGTATGCGTTGGCAGATCTCAAATCGGCGCCGCCAGGGGCCTAT TTTTTTTGCGGTACAACTCAGATCTTCCCAGCCCAGAACGTTCTGGTAAC TTTCTTGGTGCATAACTATGCTGAGTTAGTGTGTCTCAACCATAATGTTC GATCAAGTGGTGACTAGTACAGCTGTTGTCAACAAATTTTCGGATGTGAT ATCAAAAACATGAATATATATATATATATATTTTTTTTTTCTCAAAATGT TGTAGTCACCCCACCTGGAATGTTTCTGCGGCTTGCGTGTGTAACAGTCT GCCAATGCACAGCAGGAATTGGAGTTAGGGAGAAGATTGGGTTGGGGTAG GTTCGCGCTTATCGATTCGCTAAAAGATTTTCTCGTAAATTATGCCGCAG ACAAGCTCGGTGAAGATACCTAAAAATTGTACACCCTCCAAATTATTCGT AATCCCGAGCCGGGTTTTGCGGCAAGAACGGTATTTTTGTATTTGAATAT TGAAAGGAATAAATAACGGGTGAGACCCGATAAGATCGTTATTATCAAGA TTGGTGCCTAGTATATATCTTCTAAATACAAATAACTCTGTTCTGTTAAA GGAAACGTAGACATACTTTGGTAAAATACTTAAGTATGGAAGCATCGGTA AGGGTTTTTGCCTCAGCCTTCCGAGGGTTAAAAAAGAACAAAAACGAAAT GAAGCATTCGGAATACTTGTAATACAGGTGGTGATGCCCGAGCTAGCGTT GCTCATGCTCACGGTGATGGACAAGGATCTCGACGCCGACGACTTCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig17016:95..1293+

>mRNA_H-paniculata_contig17016.3933.1 ID=mRNA_H-paniculata_contig17016.3933.1|Name=mRNA_H-paniculata_contig17016.3933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig17016:95..1293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGTTGCACACAGGTGATCAGCGCTAGACAACTTCCGAAACCGGGGGG
CGCGCAAAAGGGCGAGATTATCGACCCTTATGTCATGCTCCAGCTGCATG
GGGTTCCCATGGACTGCAAGAAGGCGAAGAGCACTAAGCACGTCGACGAC
AACGGCTTCAACCCCATCTGGAGCTCAACCAGCACGTTTGACGTTTGTTG
CACACAGGTGATCAGCGCTAGACAACTTCCGAAACCGGGGGGCGCGCAAA
AGGGCGAGATTATCGACCCTTATGTCATGCTCCAGCTGCATGGGGTTCCC
ATGGACTGCAAGAAGGCGAAGAGCACTAAGCACGTCGACGACAACGGCTT
CAACCCCATCTGGAGCTCAACCAGCACGTTTGACGTGGTGATGCCCGAGC
TAGCGTTGCTCATGCTCACGGTGATGGACAAGGATCTCGACGCCGACGAC
TTCGTGGTGGTGATGCCCGAGCTAGCGTTGCTCATGCTCACGGTGATGGA
CAAGGATCTCGACGCCGACGACTTCGTG
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