mRNA_H-paniculata_contig17011.3931.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17011.3931.1
Unique NamemRNA_H-paniculata_contig17011.3931.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: A0A6H5KZ26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ26_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.140e-33
Identity = 70/134 (52.24%), Postives = 87/134 (64.93%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDIS-GQRIKRPSKQTKSGARRNQHPFSRPSDAPRGKSRQGK------------EEIFHPVYCKECDHRVGVMDEEEVFHFFGVIASG 366
            SDAQLSCPLCFTTVCLECQRHA+Y+ QFRAV  +NV +  D  L++ D+S G  ++R  K  + G  +     S P D+  G  RQ +            +E+FHPV C ECDHRVGV D +EVFHFFGV+ASG
Sbjct:  135 SDAQLSCPLCFTTVCLECQRHAKYYNQFRAVTGINVNINYDVFLTLDDVSEGGSVQR--KGRRKGHGKTPAVASVPRDSGGGVDRQNQTAQVDAEGGEEEQEMFHPVSCGECDHRVGVYDVDEVFHFFGVVASG 266
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BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: D8LQE6_ECTSI (E2f-associated phosphoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE6_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 3.820e-31
Identity = 68/140 (48.57%), Postives = 81/140 (57.86%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDISGQRIKRPSKQTKSGA-------------------RRNQHPFSRPSDAPRGKSRQGKEEIFHPVYCKECDHRVGVMDEEEVFHFFGVIASG 366
            SDAQLSCPLCFTTVCLECQRHA+Y+ QFRAV  +NV +  D  L++ D+SG                                 RRNQ      S    G+ R+ ++E FHPV C ECDHRVGV D +EVFHFFGV+ASG
Sbjct:  134 SDAQLSCPLCFTTVCLECQRHAKYYNQFRAVTGINVNINYDVFLTLDDVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDRRNQ------SAQVDGEDREEEQETFHPVSCGECDHRVGVYDVDEVFHFFGVVASG 267
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BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: UPI0004F4FE5F (E2F-associated phosphoprotein n=2 Tax=Spheniscidae TaxID=9231 RepID=UPI0004F4FE5F)

HSP 1 Score: 107 bits (267), Expect = 5.470e-26
Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDISGQRIKRPSKQTKSGARRNQHPFSRPSDAPRGKSRQGKEEIFHPVYCKECDHRVGVMDEEEVFHFFGVIAS 363
            SDA L+CP C TT+CL+CQRH  Y TQ+RA+  MN VV  +E L       +++K+ +K+ K    R++ P S PSD       Q +EE++HPV C EC   V VMD++EVFHFF V+AS
Sbjct:  172 SDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCVVNKEEILKYR----KKLKKRNKKMK----RSKEPTSIPSD-------QEEEEVYHPVLCTECSTEVAVMDKDEVFHFFNVLAS 276
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BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: UPI00052917BE (E2F-associated phosphoprotein-like n=1 Tax=Buceros rhinoceros silvestris TaxID=175836 RepID=UPI00052917BE)

HSP 1 Score: 103 bits (256), Expect = 6.040e-26
Identity = 53/120 (44.17%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDISGQRIKRPSKQTKSGARRNQHPFSRPSDAPRGKSRQGKEEIFHPVYCKECDHRVGVMDEEEVFHFFGVIAS 363
            SDA L+CP C TT+CL+CQRH  Y TQ+RA+  MN  V  +E L              K+ K+  ++ +H    PS+    +S Q +EE++HPV C EC   V VMD++EVFHFF V+AS
Sbjct:   20 SDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCTVNREEVLKYR-----------KKVKNRRKKMKHSKETPSE----QSNQTEEEVYHPVLCTECSTEVAVMDKDEVFHFFNVLAS 124
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BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: A0A803SMK2_ANOCA (E2F associated phosphoprotein n=3 Tax=Iguania TaxID=8511 RepID=A0A803SMK2_ANOCA)

HSP 1 Score: 105 bits (263), Expect = 2.780e-25
Identity = 53/120 (44.17%), Postives = 70/120 (58.33%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDISGQRIKRPSKQTKSGARRNQHPFSRPSDAPRGKSRQGKEEIFHPVYCKECDHRVGVMDEEEVFHFFGVIAS 363
            SDA L+CP C TT+CL+CQRH  Y TQ+RA+  MN  V  +E L   D    + KR  K+ K             +++  G  +Q +EEI+HPV C EC   V V D++EVFHFF V+AS
Sbjct:  182 SDAVLNCPACMTTLCLDCQRHESYRTQYRAMFVMNCTVIKEEILKYKDPLNMKTKRKHKKIKQS-----------TESTAGSEKQEEEEIYHPVKCTECSTEVAVFDKDEVFHFFNVLAS 290
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BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: A0A7K8HK44_9CORV (EAPP protein (Fragment) n=1 Tax=Aleadryas rufinucha TaxID=461220 RepID=A0A7K8HK44_9CORV)

HSP 1 Score: 102 bits (254), Expect = 3.710e-25
Identity = 54/120 (45.00%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDISGQRIKRPSKQTKSGARRNQHPFSRPSDAPRGKSRQGKEEIFHPVYCKECDHRVGVMDEEEVFHFFGVIAS 363
            SDA L+CP C TT+CL+CQRH  Y TQ+RA+  MN VV  +E L       +++KR SK+ K              +    +S Q +EE++HPV C EC   V VMD++EVFHFF V+AS
Sbjct:   61 SDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCVVNKEEILKYR----KKVKRRSKKMKHS-----------KEISSIQSNQEEEEVYHPVLCTECSTEVAVMDKDEVFHFFNVLAS 165
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BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: A0A8D2L992_VARKO (E2F associated phosphoprotein n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2L992_VARKO)

HSP 1 Score: 105 bits (261), Expect = 5.480e-25
Identity = 53/120 (44.17%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDISGQRIKRPSKQTKSGARRNQHPFSRPSDAPRGKSRQGKEEIFHPVYCKECDHRVGVMDEEEVFHFFGVIAS 363
            SDA L+CP C TT+CL+CQRH  Y TQ+RA+  MN  V  +E L       ++ KR  K+ K             S++  G  +Q +EEI+HPV C EC   V V+D++EVFHFF V+AS
Sbjct:  182 SDAVLNCPACMTTLCLDCQRHESYRTQYRAMFVMNCTVVKEEILKYKSPLNKKTKRKHKKIKQS-----------SESIAGSEKQEEEEIYHPVKCTECSTEVAVLDKDEVFHFFNVLAS 290
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BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: UPI000778BDB2 (E2F-associated phosphoprotein n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000778BDB2)

HSP 1 Score: 104 bits (259), Expect = 1.060e-24
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDISGQRIKRPSKQTKSGARRNQHPFSRPSDAPRGKSRQGKEEIFHPVYCKECDHRVGVMDEEEVFHFFGVIAS 363
            SDA L+CP C TT+CL+CQRH  Y TQ+RA+  MN  V  +E L   D   ++ KR  K+TK             S++  G  RQ +EEI+HPV C EC   V  +D++EVFHFF V+AS
Sbjct:  182 SDAVLNCPACMTTLCLDCQRHELYRTQYRAMFVMNCTVVKEEILKYKDPLNKKTKRGHKKTKQS-----------SESITGTERQ-EEEIYHPVKCTECSTEVAALDKDEVFHFFNVLAS 289
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BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: A0A8C0U1Z3_CYACU (E2F associated phosphoprotein n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=A0A8C0U1Z3_CYACU)

HSP 1 Score: 103 bits (257), Expect = 1.230e-24
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDISGQRIKRPSKQTKSGARRNQHPFSRPSDAPRGKSRQGKEEIFHPVYCKECDHRVGVMDEEEVFHFFGVIAS 363
            SDA L+CP C TT+CL+CQRH  Y TQ+RA+  MN VV  +E L       +++KR SK+ K              +    +S Q +EEI+HPV C EC   V VMD++EVFHFF V+AS
Sbjct:  157 SDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCVVNKEEVLKYR----KKVKRRSKKMKHS-----------KEIVSTQSNQEEEEIYHPVLCTECSTEVAVMDKDEVFHFFNVLAS 261
[Close]
BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Match: UPI001FAE2BD0 (E2F-associated phosphoprotein n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAE2BD0)

HSP 1 Score: 103 bits (258), Expect = 1.600e-24
Identity = 57/125 (45.60%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:    4 SDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDISGQRIKRPSKQTKSGARRNQH-----PFSRPSDAPRGKSRQGKEEIFHPVYCKECDHRVGVMDEEEVFHFFGVIAS 363
            SDA L+CP C TT+CL+CQRH +Y TQ+RA+  MN  V+ DE L       Q+ K+P K      RR  H     P   PS  P G      EEI+HPV C EC   V V D++EV+HFF ++AS
Sbjct:  181 SDAVLNCPACMTTLCLDCQRHEKYRTQYRAMFVMNCTVKTDEVLRYKT---QQEKKPRK------RRRDHKAEVSPNGAPSPRPAG---MDSEEIYHPVKCSECSTEVAVFDKDEVYHFFNILAS 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17011.3931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ26_9PHAE2.140e-3352.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQE6_ECTSI3.820e-3148.57E2f-associated phosphoprotein n=1 Tax=Ectocarpus s... [more]
UPI0004F4FE5F5.470e-2647.50E2F-associated phosphoprotein n=2 Tax=Spheniscidae... [more]
UPI00052917BE6.040e-2644.17E2F-associated phosphoprotein-like n=1 Tax=Buceros... [more]
A0A803SMK2_ANOCA2.780e-2544.17E2F associated phosphoprotein n=3 Tax=Iguania TaxI... [more]
A0A7K8HK44_9CORV3.710e-2545.00EAPP protein (Fragment) n=1 Tax=Aleadryas rufinuch... [more]
A0A8D2L992_VARKO5.480e-2544.17E2F associated phosphoprotein n=1 Tax=Varanus komo... [more]
UPI000778BDB21.060e-2445.83E2F-associated phosphoprotein n=1 Tax=Python bivit... [more]
A0A8C0U1Z3_CYACU1.230e-2445.83E2F associated phosphoprotein n=1 Tax=Cyanistes ca... [more]
UPI001FAE2BD01.600e-2445.60E2F-associated phosphoprotein n=1 Tax=Girardinicht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17011contigH-paniculata_contig17011:387..1485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue2.4e-25
Seed eggNOG ortholog2880.D8LQE6
Preferred nameEAPP
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0008150,GO:0008284,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032784,GO:0032785,GO:0032786,GO:0032968,GO:0034243,GO:0034244,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.negative regulation of transcription elongation from RNA polymerase II promoter
EggNOG OGsKOG3395@1,KOG3395@2759
Ec32 ortholog descriptionE2F-associated phosphoprotein
Ec32 orthologEc-10_005350.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.2048435-CDS-H-paniculata_contig17011:386..4701622929346.2048435-CDS-H-paniculata_contig17011:386..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17011 387..470 +
1691480824.190603-CDS-H-paniculata_contig17011:386..4701691480824.190603-CDS-H-paniculata_contig17011:386..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17011 387..470 +
1622929346.2226448-CDS-H-paniculata_contig17011:1200..14851622929346.2226448-CDS-H-paniculata_contig17011:1200..1485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17011 1201..1485 +
1691480824.2027617-CDS-H-paniculata_contig17011:1200..14851691480824.2027617-CDS-H-paniculata_contig17011:1200..1485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17011 1201..1485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17011.3931.1prot_H-paniculata_contig17011.3931.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17011 387..1485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17011.3931.1

>prot_H-paniculata_contig17011.3931.1 ID=prot_H-paniculata_contig17011.3931.1|Name=mRNA_H-paniculata_contig17011.3931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
VSDAQLSCPLCFTTVCLECQRHARYHTQFRAVHAMNVVVRDDETLSMSDI
SGQRIKRPSKQTKSGARRNQHPFSRPSDAPRGKSRQGKEEIFHPVYCKEC
DHRVGVMDEEEVFHFFGVIASG*
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mRNA from alignment at H-paniculata_contig17011:387..1485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17011.3931.1 ID=mRNA_H-paniculata_contig17011.3931.1|Name=mRNA_H-paniculata_contig17011.3931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1099bp|location=Sequence derived from alignment at H-paniculata_contig17011:387..1485+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGCGACGCGCAGCTTAGCTGTCCGCTGTGCTTCACTACTGTCTGCCT
GGAATGTCAACGGCATGCACGATATCACACCCAGGTAGAAACATATTTCA
CCCCCCGGACAAATACGAATACTTGCAAATGGTTTTCACAAAAAAACTGA
AAGTATTCGCCTGAGTTTCAAAATGAGCCGATGCATAGAATAAAATACCC
GCCCCTTGTCCATTCGATTTATGAGCATTAGTAGCAGTCGGAGCTGGTCC
GGGGCATATAGAATAACATGGGCCCATTCTGAAACTCAGGTGAATATTTT
CAGTTTCTTGTGAAAACCATTTGGAAGTATTCGTATTTGTTTGGGAGGTG
AAATATTTACCTCTCGTAATGGACCACTCCTGTATACGTGATCTATGTAT
GTATGTTGTTTGTTTTTTCTCTTGCGATGCACACGACAGTGCTGAAAACA
AACAAGCAGCTATACAAGCAAAATCGTTGTTATTGCTGCATCATCGTTAT
TATCCAATGGATATTAGCGTATGCGTGTGATGTTGTAGACACCGAGATTT
CAAAACGCCTCATCATCATCACGCGACATCCGATCACCCTCTTCGACAGG
TACAACCAGCCAGACTGCCGAGACCTTCAGCCCAAGCAGAAAAACAACAA
TCACGTACCCCAATCCGGACCCTAGGTCGTTTTTCAGCACACCCGCCAAC
GTCTCCCTATGCACACAAATACATGTTCAAACTGTCAGCTTAAACAGACC
CCTTACGTATGCACATCACACTCGCCAACTTGCTTGGTCCGGTCCGTCTT
GAATCCCTATTCAGTTCCGCGCGGTGCATGCTATGAACGTGGTGGTGAGG
GATGACGAGACACTCTCTATGAGCGACATATCCGGGCAGCGAATAAAGCG
GCCGAGCAAGCAAACCAAATCCGGAGCAAGGCGAAATCAACACCCGTTTT
CACGGCCTTCTGATGCTCCGCGGGGGAAGAGTCGGCAGGGGAAGGAGGAG
ATTTTTCATCCCGTATATTGTAAAGAATGTGATCATAGGGTGGGAGTCAT
GGATGAGGAGGAGGTGTTCCATTTCTTCGGCGTTATTGCGTCAGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17011:387..1485+

>mRNA_H-paniculata_contig17011.3931.1 ID=mRNA_H-paniculata_contig17011.3931.1|Name=mRNA_H-paniculata_contig17011.3931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig17011:387..1485+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGCGACGCGCAGCTTAGCTGTCCGCTGTGCTTCACTACTGTCTGCCT
GGAATGTCAACGGCATGCACGATATCACACCCAGGTGAGCGACGCGCAGC
TTAGCTGTCCGCTGTGCTTCACTACTGTCTGCCTGGAATGTCAACGGCAT
GCACGATATCACACCCAGTTCCGCGCGGTGCATGCTATGAACGTGGTGGT
GAGGGATGACGAGACACTCTCTATGAGCGACATATCCGGGCAGCGAATAA
AGCGGCCGAGCAAGCAAACCAAATCCGGAGCAAGGCGAAATCAACACCCG
TTTTCACGGCCTTCTGATGCTCCGCGGGGGAAGAGTCGGCAGGGGAAGGA
GGAGATTTTTCATCCCGTATATTGTAAAGAATGTGATCATAGGGTGGGAG
TCATGGATGAGGAGGAGGTGTTCCATTTCTTCGGCGTTATTGCGTCAGGG
TGATTCCGCGCGGTGCATGCTATGAACGTGGTGGTGAGGGATGACGAGAC
ACTCTCTATGAGCGACATATCCGGGCAGCGAATAAAGCGGCCGAGCAAGC
AAACCAAATCCGGAGCAAGGCGAAATCAACACCCGTTTTCACGGCCTTCT
GATGCTCCGCGGGGGAAGAGTCGGCAGGGGAAGGAGGAGATTTTTCATCC
CGTATATTGTAAAGAATGTGATCATAGGGTGGGAGTCATGGATGAGGAGG
AGGTGTTCCATTTCTTCGGCGTTATTGCGTCAGGGTGA
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