mRNA_H-paniculata_contig10600.393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10600.393.1
Unique NamemRNA_H-paniculata_contig10600.393.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10600.393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10600contigH-paniculata_contig10600:2352..8350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size469
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10600.393.1prot_H-paniculata_contig10600.393.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10600 2447..8350 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928765.0447073-UTR-H-paniculata_contig10600:2351..24461622928765.0447073-UTR-H-paniculata_contig10600:2351..2446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10600 2352..2446 +
1691480610.6261256-UTR-H-paniculata_contig10600:2351..24461691480610.6261256-UTR-H-paniculata_contig10600:2351..2446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10600 2352..2446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928765.0649004-CDS-H-paniculata_contig10600:2446..25041622928765.0649004-CDS-H-paniculata_contig10600:2446..2504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10600 2447..2504 +
1691480610.6391797-CDS-H-paniculata_contig10600:2446..25041691480610.6391797-CDS-H-paniculata_contig10600:2446..2504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10600 2447..2504 +
1622928765.0817378-CDS-H-paniculata_contig10600:6434..67041622928765.0817378-CDS-H-paniculata_contig10600:6434..6704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10600 6435..6704 +
1691480610.6501079-CDS-H-paniculata_contig10600:6434..67041691480610.6501079-CDS-H-paniculata_contig10600:6434..6704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10600 6435..6704 +
1622928765.097752-CDS-H-paniculata_contig10600:8306..83501622928765.097752-CDS-H-paniculata_contig10600:8306..8350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10600 8307..8350 +
1691480610.660861-CDS-H-paniculata_contig10600:8306..83501691480610.660861-CDS-H-paniculata_contig10600:8306..8350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10600 8307..8350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10600.393.1

>prot_H-paniculata_contig10600.393.1 ID=prot_H-paniculata_contig10600.393.1|Name=mRNA_H-paniculata_contig10600.393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MVDVIQSTLQRVRYSFRQSILRNRGCLPCCGSRRHHSISDSRSSDDGDDG
DEDYHNPYPLPCSPSHCCRSSPCCGADNGADNGGAGGGDDGCCYGWLSYM
TSCWDWLPLGGGFNPRGNMTADDA
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mRNA from alignment at H-paniculata_contig10600:2352..8350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10600.393.1 ID=mRNA_H-paniculata_contig10600.393.1|Name=mRNA_H-paniculata_contig10600.393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5999bp|location=Sequence derived from alignment at H-paniculata_contig10600:2352..8350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCGAAACTGCCGCAGGTGCTCCGTTTTTTTTCCTTGCTGCAGCGGGG
GCGAAGAGACGCAGTCACGTCGACGGGAAAGTGTGAAAGAAGGCCATGGT
CGATGTGATTCAATCGACTTTGCAGCGGGTGCGGTACAGCTTTCGCCAGT
CAAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGGAGATGTGATTTTCGGTGTTAAGGTTTCAG
TTGCCACATGACTAAATAGTTGGTTCTAGCTGCAAGGCTGACCCAGACGG
TTTTCCTCTCATGTATAGATTTTATTTGTAGTCTTTCTGGACACAGTTGC
CAACGGCTCCCGGATCTTGGATCTTGGATCTTGGATCTTGGACAGCCAGT
AGTAGCGGAATCCAAAGTAGGATTTCGATATAGGAGGCAGGGGTTTAGGG
ATCCCTGTAACCGCCAGAAAACGTGCTCTCCACTAACCCTCTAGGAACCG
TTTACCTCGTGACGACCAAAATGTATATTTTCTCACGATCAGTCTTGGAT
CATGACTATATATCGTCGAACTGGTTACAGCCGTTTTTCCATGTGGGCGG
TTTTAACCGATTTATTTTTTGGCAGTAATAGTAAGAAATAAACAGTTCCA
GCGCCGTCCGATCTTCTACGATGTCACCGTTAAAATTGATGTAAGATCGT
TTTTTCATTCTTTTTAAAGTGCCTCGATAAGACATGGCCTAACCAGCTCT
AGACTGCTGATCAAAATATCTCAAGACCCGAAAGCCTGTCCTTCGTTTTT
TGTTGCCGACTGTGGCCTTACGCTCTTAGATTATTGAGTGGAAAGACAGA
ACGGGCAAGTGCCAGGCGTCTTTAGGATCGGGCTACTGTAGGGGGGGGGG
GGGTCGCTGAGTCGCTTTTTTCCCGTTTCGAGCCACTTTTGGGAGCTGCT
CGGCAAAACGTCTTCTCTCTCTTGAACAGTACGGTCGTTCCGAATTGTGG
ATTGTGTGCCTCTAGAGATGCGTGAACGCGCGCCGTTGAGCAGGTTTGAA
ATTGGTTTGTTTGGTTTTGATGTCAGTTTTTTAGAGCCGCTTTTCGAAGT
GGTCCTTCGTCAAAGAGGTGGCTTGAAAGCCCTCCCTCCCCCAATACCGC
AGCCCGAGTCTCGTTTCACTGTTACCCCCCCAGAGCATACATGAATACTT
GATAATTATTTCCACAAAAAAGTTTTTTTTCTACGTTTCCGAATGAGCTC
GTGTATTCTATGTTCCCCGGGCCATTATTCACGACTGCTAATAATGCTCG
TACATGGAATGGACAGGAGTGGGTACTTTATCCCATGTGTCCGCTCGTTC
TGAAACTCGAGCGAATATTTTTTTATATTCGTGGCGAATACACAAAATTA
TTCGTATTTTTCCGGGGGGTGCACTGTTATTCGGAAGAATCGTAAGAAGG
TGGCCCGGGGGCATATGAAATAGGTGATGCTTATATCTGAATCTTTAGGC
GAATACTCTTCAACATTTGTCATGAATGCTCCGATCCAAGTACCCGTTTG
TATTCGTCCTCGGGCGCAAGTTTATCGTGACGGCGTATATGTTATGTTCC
AATGTTTTGTTTTTGTTTTGCGTTTGCAGCCCTTGGTGTGTGCACATCAT
GACTTGGTGTTTTTTTTTTCATTGCGTTATCTAGAGTAACGCTCACGGAT
AGGCGGGTCTGTACTATATTTTGGTCATATTCTAGGGCTTTGGGATGTCA
GTTTATATACACGTGAGAACGTGATTCTTGCAGGAGAGTAGTCTGACCTT
CGCGAGAGCAACGCCCGCTCTGTAGATCAGGTCTAAGGGTCATCTCTAGC
GACCGCGTTTTCGGCGGAAATTTACGAAATGTAGACATAACGAAATAAGG
AAAATTTGGCTGAACGTCAAGGCAGTCAAAATCCCCACAATTCAAAATTC
CTAACGGGTCCGAGCGAAAAAATTGGGCGATATCAATACAATCAACCCCC
CGTTTGGAATCTTGTGAAGTCTGGAAATGAATTTTTGAAGTCAAAACGCC
GTCATAGAGCCTTCATATCGTTACTCAGTCTTCGTACTTACTCAACACGT
ACAATTTTTGTGGAGAGGTAGGTGCACTCATGGTCTTGATTCGAACACTC
CACGAAGGGGTGAAAAGAACCTGCTGGCAAATAATGACGTTTTTCGAGAG
GGTTTCGGAAAATGCCACGAGTTGTCGTACCGTCACGAACTGTAAATTTC
TGAAAGTCGCGATGACCGCCTCATTGACCTTCGGCAATCTGCCCTCATTC
AGGTGTGTGGAATGAAATATCAATTCTCGGGCAGGAGCATCCGATCCGAT
GGCATCAGCAGGATTTACCAGTAGAAATGAAATCGATGAAGTAGGGAGAA
AAACTAACCCTTAAGGCTGTGTCTTATCGGTGCAGTTTGAAAGCGATTTT
GAATCGCTGTTTCCCACGACTAATAAATTCGAATTTTTTTGTTTTGTGTA
TTTTTTTCGCGCCGGATGACGACAAAACTACCCAAGTAGAAGAAAGTGAG
CCTCAATCACGTTTTTTTTTTTTTTTCTAATTAATAAGAAATCCAGCCTA
AGAGATGGGGTTCAAGTTTGGGCCTTGTACTGAGTCCTATTAAAAAAAAA
AAGAAGGGTATACTTAGTGCGTACGATTGTTGCCAAAAAAAGATTTGGAG
CTTCACTGAAAATAAGGAAGGTCTAGAAGTATTAGTATACAGAGGAAGAC
AGAGTATAAGGATAGGTTGAAGGGATACCTTACATATGGGTCATTGGACA
CAGGCATATTGTCAAATTTGGACGGGGGGATCTTGATTTCAAGGAACTTT
TGTAGAAAACGAGTCGGTAAGCATTTAATGCCTACTAACTAGTCCATGGT
ATAATCATTTTCGAGCCTAATGGAGTATGACCTTATAATTCGCTGTGCGG
GGGTTGTTTATTCCTTTGGCCGTTACGAAACGGCCAGGTGTTTGTCCATT
CTCGCTTCATGAGTATCGCCACGGTAGAGGGGGGGTATAATATTCACTGA
GAGTCGATCCTCAATTTGTCTAACAAAGGAAGCTTAAATCAAAACCTAAG
TCAATGGCCTGCTTTTATGCATCACCAAGGGTCACAAGGCACGATTTTGA
ATGGTCGTTGTGTTGAAGGGGAATATATATTTATATATTGTCTGCAGTGC
CGCTTTGTTAATCGACTCCAAACCGGAGACAAGTCGACTCGAGTACATCC
CCCCCTTGTGCCGTAGCTCGACAAGGCACACAGTTGAACGTTCAAGGGAG
AACGCGGGGTGTTGACCTGAAGCAACGCAAAAGCGATTCAGCGCAGTAGA
CGTAGATCAATTATATACTCAAGCGTGACTGCGGTATGCGTGCGGAGACT
GAATTCATGTTGTGGGAGAATGCCTCCTGTATAAAGAAAAGGGAGGAGCT
TGTATGTAAGTGACTTACTTGGGAGGCCTTTAAACCCTGGAATTAGAATA
AGGTGGCAGTAACGATTCTAGCAGATAGAAATTGGCCTTGAGCAGGCGAC
GGTTGGAGTAGATAGGGTATGTACTCCGGAGTAGTAGTACAGTGTAAAAC
ATGTTGGAGCCAGTGTGTGTTGGCAAAGCAGCAAAGAGCGATTGGCCATC
GGAAGTCCCTTCAAAGCCCCGTCCCCGTCCCCTCCCGACGATTACACGCG
TGTTCATTGGTCTAACAACTTCGGCATGCGAAACGTGAGTACCCCCCCCC
CCCGTCGGAACCTCCGTCTTCCCGAGGACACGTGGTCAATGGTTTACCAT
AAAAACTACGGTACCTAAAACATGCGAGTAGTTCCCCCCCTCCGCCCTTG
TTGGTTTGGTTTTATGGTAATAAGTGTACACAAGTCCCGATTGAAGACAC
ACAGAAATATTCCGAAGAGTGGAAGTAGCGGAAAGGGTTTTTTGCCTGAA
CTTCCGGGGGTTAAAAAAAAGAAGAAAAAGTCCAGATTGAAGTCAAGTGC
ATAATCCGAGGCAGCAATTCGGGCATAGTCATGTCGTTTGTGCCCTTATC
CCGTCGTAATTTCTCTCTCGTTCTTTCTTCCAGTATTGCGGAACAGGGGC
TGTTTACCTTGTTGCGGTTCTCGAAGACACCACAGCATCTCCGACAGCAG
GTCTTCGGACGACGGTGATGATGGCGACGAGGATTACCACAACCCGTACC
CGCTTCCTTGTTCGCCGTCCCATTGCTGTCGTTCTTCGCCGTGTTGTGGT
GCTGATAATGGTGCTGATAATGGTGGTGCTGGTGGAGGTGACGATGGGTG
CTGCTACGGTTGGTTGTCTTACATGACGTCTTGCTGGGATTGGCTCCCGC
TAGGTGCGAGCGGAGTGGAGCTATCATACTATTGTAAATGTACAGATTTG
CTGTTAGTTAGCCCTTTGGGGTAGGTAGAGCGTATGAATCCCCTCCTCGT
CCACCCCCTAAATCTGCTGTGCCGGGCGGGTTTATTTTCTTGGCGGTTAT
GAAACGGTGGTCGTTACGAAATGTTTGCTGTTACGAAACTTTGACCGGTA
CCAAGCTTTGGCCGTTACAAAACAAGGCTGGTGTTCGTGGTTGCCTGTTC
TCACTCTACACTAAAGACAAGATAAAAGGTCGCTCTAAATGGTAAATCCC
CTCCCCCCCCCCCCCCCCCCCCGCTACAAGGTATCGTACTATAAACCAGC
TGTGCAGGGAAGTTCTCGCGAAAACGAAGGGTTACGTTCTCCCTTCAAAA
AGTCTCGATAAGTTATACATGGTACGAAGTGTTTTTTTGTTGGAGAAGAA
TACACAGGAACACAACATTTTACTCCACGAAAGGAAGTCGTGTATTTTTT
TTTTTTTTTTTTTTCTCTCTGTCGTAAAGTTTTTAGGGGGCCACCGCAAG
CTACGTCAGTGGCGATTGGTTCGACCGAACCGGGGTGGCGCCTACCTAAC
AGAGGAATAAATAACTCTGTTCTGTTAAAGGAAATGTAGAAATACTTTAG
TAAAATACTTAAGTATGGAAGCATTGGTAAAGGTTTTTGCCTCAGCCTTC
CGGGGATTAAAAAAAATATGTTAGTGGCGAATGACACTGGGCAAAAATCA
CTCAGACAGAGAATAGAAAATGTTCTAAGAGTAACGTCAATACCATCACT
ACCGTATTAACCATCCAGGAACCGGACTTCGTAACGGCCATTAGATAGAT
TTGCTAACGACTAGTTTTGTAAATAATGAACGAATACGTGAAGGATACTG
TTTACAGCCCATCTCTGGTTGTAGTCGTAGGTAGCTGGTTAGTTTAGTAA
TATCTCAGGTGGAAAACGGGGGTCGTGTGTTTGATTATCATTCGAGGGCT
TTTATATCTAGGATTTTGTCACGTGTAGGGTGCTTGTTGCTTCTTGGGTC
GTTACGAAAAGAAGCCAGTGTTTGCCCCGTTCTCGCTCCATGTTAAATCC
AAGATCAAGCCCCTTCAAGCAGCAAATAAACGACCCCGTTATGCACTGGA
GATGCCCTAAACCATTATCTAGAGCTGGCCAGGATGGTGTCTAGGTATTC
GTCATTATTCACGACTGGTCGTTGGTAAGGTACTTCCATCTTTTGGACGT
TGCGAAGTCTGGTTCCTAAAGTAGAGATAATGCTTACCCAACTAGTAAGA
GCTGGCTGGATAGTTTAGTAATATCTCAGGTGCGACAGGGGGGTCGTGTG
GTCTATTTTTCCGTTTGCGTGCCTTTTTTTATTTTTGGATTTATCCAAGT
GCAGAGTTTGTTTGAACGGTCATAACACATTTTTTTTTTTTTTTAATCCT
TGTAAGCGATCCAACGATAAAACCAGCAGATCGTTGCTCCAGGGCTCTGA
AGATAGAGCTAATAGGTTAAAATTTATTGAAAATTATTACTTGAAAATAA
ATTGTAATGATTCTCGTGTTCTCCTTGCCGTGATCGGTTTTTCATTTTCA
TGCAGGCGGTGGATTTAACCCCCGCGGTAACATGACGGCCGACGACGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig10600:2352..8350+

>mRNA_H-paniculata_contig10600.393.1 ID=mRNA_H-paniculata_contig10600.393.1|Name=mRNA_H-paniculata_contig10600.393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig10600:2352..8350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGATGTGATTCAATCGACTTTGCAGCGGGTGCGGTACAGCTTTCG
CCAGTCAAATGGTCGATGTGATTCAATCGACTTTGCAGCGGGTGCGGTAC
AGCTTTCGCCAGTCAATATTGCGGAACAGGGGCTGTTTACCTTGTTGCGG
TTCTCGAAGACACCACAGCATCTCCGACAGCAGGTCTTCGGACGACGGTG
ATGATGGCGACGAGGATTACCACAACCCGTACCCGCTTCCTTGTTCGCCG
TCCCATTGCTGTCGTTCTTCGCCGTGTTGTGGTGCTGATAATGGTGCTGA
TAATGGTGGTGCTGGTGGAGGTGACGATGGGTGCTGCTACGGTTGGTTGT
CTTACATGACGTCTTGCTGGGATTGGCTCCCGCTAGTATTGCGGAACAGG
GGCTGTTTACCTTGTTGCGGTTCTCGAAGACACCACAGCATCTCCGACAG
CAGGTCTTCGGACGACGGTGATGATGGCGACGAGGATTACCACAACCCGT
ACCCGCTTCCTTGTTCGCCGTCCCATTGCTGTCGTTCTTCGCCGTGTTGT
GGTGCTGATAATGGTGCTGATAATGGTGGTGCTGGTGGAGGTGACGATGG
GTGCTGCTACGGTTGGTTGTCTTACATGACGTCTTGCTGGGATTGGCTCC
CGCTAGGCGGTGGATTTAACCCCCGCGGTAACATGACGGCCGACGACGCT
GCGGTGGATTTAACCCCCGCGGTAACATGACGGCCGACGACGCT
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