mRNA_H-paniculata_contig17005.3930.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17005.3930.1
Unique NamemRNA_H-paniculata_contig17005.3930.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: D7G7U8_ECTSI (Thylakoid lumenal 15 kDa protein, chloroplast (P15) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U8_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.650e-41
Identity = 130/208 (62.50%), Postives = 145/208 (69.71%), Query Frame = 3 
Query:  276 NLTDTAVKHVIPALLLGASLTGA-----SPTDLTNVFGAVPVFALDSSVGASSVSDSKINRGAASTGDRGARTTVTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPANIEGADFTDTFLRKDQVLYLCGI--AEGTNPVTGVDTRDSLGC 878
            NL + A +  +PA+LLG +LT +     SP   T V GA PVFA D   G SSVSDSK++ GAASTGD+GAR TVTRGVNIE AD+H KD+S                           XXXXXXXXXXXXXXXXXXXXXXXXXXX   +VTEAYVSGAT M PA IEGADFTDTFLRKDQV YLCG+  A+GTNPV+GVDTRDSLGC
Sbjct:   40 NLFNDAAR-CVPAVLLGVTLTTSAPLLDSPAAHTAVLGASPVFADDK--GMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLETAKGTNPVSGVDTRDSLGC 244
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: A0A835YUD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD1_9STRA)

HSP 1 Score: 127 bits (318), Expect = 9.430e-30
Identity = 106/208 (50.96%), Postives = 124/208 (59.62%), Query Frame = 3 
Query:  264 HPCHNLTDTAVKHVIPALLLGASLTGASPTDLTNVFGAVPVFALDSSV--GASSVSDSKINRGAASTGDRGARTTVTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPANIEGADFTDTFLRKDQVLYLCGIAEGTNPVTGVDTRDSLGCD 881
            H C N    A   ++P  +  A++  AS      +F   P FA+  +   GASSVSD+K+  GAAST D G+R  +TRGVN+E ADFHGKDMS                                XXXXXXXXXXXXXXXXXXXXXX        YVSGAT   P +IEGADFTDTFLRKDQ++YLC IA+GTNPVTGVDT DSL C+
Sbjct:   34 HMCANKNLEA--RIVPGFV-AAAMVAASV-----LFPVAPGFAMQPAAKEGASSVSDTKMLSGAASTLDTGSRKIITRGVNLENADFHGKDMSGVSFQQSLVRGTNFASSKLIGSGFFDADLSNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGATKFEPKDIEGADFTDTFLRKDQIMYLCAIAKGTNPVTGVDTADSLSCN 233
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: A0A0G4I188_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I188_9ALVE)

HSP 1 Score: 95.9 bits (237), Expect = 1.200e-18
Identity = 111/168 (66.07%), Postives = 130/168 (77.38%), Query Frame = 3 
Query:  378 VPVFALDSSVGASSVSDSKINRGAASTGDRGARTTVTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPANIEGADFTDTFLRKDQVLYLCGIAEGTNPVTGVDTRDSLGCD 881
            +P FAL  S GA +  + KI RG AS+ ++G    +TRGV +E ADF GK+++    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ++T AY+SGATN+    IEGADF++T LR DQ  YLC  A GTNPVTG+DTRD+L CD
Sbjct:   78 LPSFAL--SAGADTRVEGKILRGGASSFEQGRPNMITRGVKLEDADFKGKNLAGVSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLITRAYISGATNLKGVEIEGADFSETQLRADQKSYLCERASGTNPVTGMDTRDTLRCD 243
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: A0A7S3Y7I5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y7I5_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 3.270e-18
Identity = 106/191 (55.50%), Postives = 127/191 (66.49%), Query Frame = 3 
Query:  318 LLGASLTGASPTDLTNVFGAVPVFALDSSVGASSVSDSKINRGAAST-GDRGARTT---VTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPANIEGADFTDTFLRKDQVLYLCGIAEGTNPVTGVDTRDSLGC 878
            LLGA +  A+ T   N+ GA           A+  SDSKI +GAAST GD+G        TRGV ++ +DF GKD+S              XXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXX   ++ EAY+SG+T +   NI+ +D+TDTF+RKDQ+ YLC IA GTNP TGV TR+SLGC
Sbjct:   66 LLGALMGVAASTAAMNMNGAR----------ANLASDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQIASGTNPTTGVGTRESLGC 246
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: A0A7S2CVZ3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVZ3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.540e-18
Identity = 91/193 (47.15%), Postives = 109/193 (56.48%), Query Frame = 3 
Query:  306 IPALLLGASLTGASPTDLTNVFGAVPVFALDSSVGASSVSDSKINRGAAST--GDRGARTTVTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPANIEGADFTDTFLRKDQVLYLCGIAEGTNPVTGVDTRDSLGC 878
            + ++ + A    AS      +  A P FA +S  GAS+V ++KI  G AST    RGAR T+TRGV ++ A+F G+D++                              XXXXXXXXXXXXXXXXXXXXXXXX           GAT+   A IEGADFTDTFLRKDQ   LC  A+GTNP TGVDTRDSL C
Sbjct:   16 VSSMEIKAPAAAASALAAALLLSATPAFA-ESDGGASNVENTKIMNGGASTIVNQRGARKTITRGVQLDKANFAGEDLTGVSFQQSQIRGGVFEKTKLLGASFFDATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATSFKDAKIEGADFTDTFLRKDQQKELCATAKGTNPTTGVDTRDSLMC 207
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: A0A7S1QSD0_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QSD0_ALECA)

HSP 1 Score: 94.0 bits (232), Expect = 5.340e-18
Identity = 84/151 (55.63%), Postives = 97/151 (64.24%), Query Frame = 3 
Query:  429 SKINRGAASTG-DRGARTTVTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPANIEGADFTDTFLRKDQVLYLCGIAEGTNPVTGVDTRDSLGC 878
            SKI  G AST    G R  +TRG+N+E A++ G+D+S           XXXXXXXXXXXXXXXXXXXXXXXXXXX                 NA+ T+ YV+G T M P  I+GADFT T  RKDQ+ YLC IAEGTNPVT VDTR+SL C
Sbjct:   89 SKIKAGGASTSAGLGTRKIITRGINLEKANYAGQDLSGVSFQQSIVREXXXXXXXXXXXXXXXXXXXXXXXXXXXMTQANLELARATDAIFTNAIATDMYVNGTTRMEPKRIDGADFTGTIFRKDQLNYLCKIAEGTNPVTKVDTRESLMC 239
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: A0A7S2TUI3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TUI3_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 2.890e-17
Identity = 96/156 (61.54%), Postives = 113/156 (72.44%), Query Frame = 3 
Query:  423 SDSKINRGAAST-GDRGARTT---VTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPANIEGADFTDTFLRKDQVLYLCGIAEGTNPVTGVDTRDSLGC 878
            SDSKI +GAAST GD+G        TRGV ++ +DF GKD+S              XXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXX   ++ EAY+SG+T +   NI+ +D+TDTF+RKDQ+ YLC IA GTNP TGV TR+SLGC
Sbjct:   93 SDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQIASGTNPTTGVGTRESLGC 248
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: A0A7R9WPJ1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WPJ1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.040e-17
Identity = 118/242 (48.76%), Postives = 149/242 (61.57%), Query Frame = 3 
Query:  183 FYDVHLFLQVLAS*MLKIVRTSLGSILHPCHNLTDTAV----KHV-IPALLLGASLTGASPTDLTNVFGAVPVF--ALDSSVGASSVSDSKINRGAASTGDRGARTTVTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPA-NIEGADFTDTFLRKDQVLYLCG--IAEGTNPVTGVDTRDSLGC 878
            F  +  FL    +   +  R  +G+ L  C+   D AV    KH  +P+ L   + T A+    T + G++ +   A  +  GAS+ +++KI  G AST   G    +TRGVN++G+DF G+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              N V+ E YVSGAT      +IEG+D+TDT+LRKDQ  YLC    A+GTNPVTGVDTR+SL C
Sbjct:   64 FVAIAPFLSSAGAFSARAPRRQIGTALQACNGRADDAVAATSKHAKMPSFLSFLAKTAAT----TALIGSLTLAGDAAFADTGASTSANAKITTGGASTLQSGRTIAITRGVNLDGSDFSGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNIEMAQFNRANLHNTVLREMYVSGATLFEGIKDIEGSDWTDTYLRKDQQKYLCNHPTAKGTNPVTGVDTRESLMC 301
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: A0A7S4HSJ0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSJ0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.520e-16
Identity = 96/218 (44.04%), Postives = 125/218 (57.34%), Query Frame = 3 
Query:  237 VRTSLGSILH-PCHNLTDTAVKHVIPALLLGASLTGASPTDLTNVFGAVPVFALDSSVGASSVSDSKINRGAASTGDRGARTTVTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPA-NIEGADFTDTFLRKDQVLYLCG--IAEGTNPVTGVDTRDSLGC 878
            +  S+GS+   P      +A   V  AL + A++  + P  +          A D + GAS+ +++KI  G AST   G    +TRGVN++ +DF G+++              XXXXXXXXXXXXXXXXXXXXXXXXXX               KNAV+ E YVSGAT +T   +IEG+D+TDT LR+DQ  YLC    A+GTNP TGVDTR+SL C
Sbjct:   48 IALSMGSLCEDPIALKAKSAAASVFAALSIAAAVAFSPPAAI----------AADDT-GASTAANAKITTGGASTLQSGRTIAITRGVNLDRSDFGGQNLKGVAFQQSIVRDSNXXXXXXXXXXXXXXXXXXXXXXXXXXTLANFEMAQFNRANLKNAVLREMYVSGATILTGVKDIEGSDWTDTMLRRDQTKYLCSHPTAKGTNPTTGVDTRESLMC 254
[Close]
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Match: A0A7S0TH33_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TH33_HEMAN)

HSP 1 Score: 89.4 bits (220), Expect = 2.490e-16
Identity = 86/150 (57.33%), Postives = 98/150 (65.33%), Query Frame = 3 
Query:  432 KINRGAASTGDRGARTTVTRGVNIEGADFHGKDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNAVVTEAYVSGATNMTPANIEGADFTDTFLRKDQVLYLCGIAEGTNPVTGVDTRDSLGCD 881
            K+ +GAAST D G+R T+TRG  ++ + F G+ +                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   VV EAY+   T +   NIEGADFTDTFLRKDQ  YLC  A GTNP TGVDT DSL C+
Sbjct:   89 KVLQGAASTQDSGSRRTITRGATLDNSRFDGQKLDGISFQQSLCRDCDFKGASLKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVNEAYILATTKLDGINIEGADFTDTFLRKDQQRYLCSRASGTNPKTGVDTYDSLLCN 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17005.3930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7U8_ECTSI2.650e-4162.50Thylakoid lumenal 15 kDa protein, chloroplast (P15... [more]
A0A835YUD1_9STRA9.430e-3050.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4I188_9ALVE1.200e-1866.07Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S3Y7I5_9EUKA3.270e-1855.50Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2CVZ3_9STRA3.540e-1847.15Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1QSD0_ALECA5.340e-1855.63Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S2TUI3_9EUKA2.890e-1761.54Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7R9WPJ1_9STRA3.040e-1748.76Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S4HSJ0_9STRA1.520e-1644.04Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0TH33_HEMAN2.490e-1657.33Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17005contigH-paniculata_contig17005:226..5152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue8.3e-37
Seed eggNOG ortholog2880.D7G7U8
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0016020,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.Pentapeptide repeats (9 copies)
EggNOG OGs2QQA1@2759,COG1357@1
Ec32 ortholog descriptionThylakoid lumenal 15 kDa protein, chloroplast precursor (p15)
Ec32 orthologEc-06_000240.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1702
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17005.3930.1prot_H-paniculata_contig17005.3930.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17005 450..4334 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.0495322-UTR-H-paniculata_contig17005:225..4491622929346.0495322-UTR-H-paniculata_contig17005:225..449Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17005 226..449 +
1691480824.1007128-UTR-H-paniculata_contig17005:225..4491691480824.1007128-UTR-H-paniculata_contig17005:225..449Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17005 226..449 +
1622929346.156096-UTR-H-paniculata_contig17005:4334..51521622929346.156096-UTR-H-paniculata_contig17005:4334..5152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17005 4335..5152 +
1691480824.1797798-UTR-H-paniculata_contig17005:4334..51521691480824.1797798-UTR-H-paniculata_contig17005:4334..5152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17005 4335..5152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.0680487-CDS-H-paniculata_contig17005:449..4611622929346.0680487-CDS-H-paniculata_contig17005:449..461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 450..461 +
1691480824.1124609-CDS-H-paniculata_contig17005:449..4611691480824.1124609-CDS-H-paniculata_contig17005:449..461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 450..461 +
1622929346.0846198-CDS-H-paniculata_contig17005:498..7301622929346.0846198-CDS-H-paniculata_contig17005:498..730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 499..730 +
1691480824.1236393-CDS-H-paniculata_contig17005:498..7301691480824.1236393-CDS-H-paniculata_contig17005:498..730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 499..730 +
1622929346.096985-CDS-H-paniculata_contig17005:1520..16551622929346.096985-CDS-H-paniculata_contig17005:1520..1655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 1521..1655 +
1691480824.1367362-CDS-H-paniculata_contig17005:1520..16551691480824.1367362-CDS-H-paniculata_contig17005:1520..1655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 1521..1655 +
1622929346.1086597-CDS-H-paniculata_contig17005:2968..30501622929346.1086597-CDS-H-paniculata_contig17005:2968..3050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 2969..3050 +
1691480824.146637-CDS-H-paniculata_contig17005:2968..30501691480824.146637-CDS-H-paniculata_contig17005:2968..3050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 2969..3050 +
1622929346.1240196-CDS-H-paniculata_contig17005:3255..33411622929346.1240196-CDS-H-paniculata_contig17005:3255..3341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 3256..3341 +
1691480824.1554117-CDS-H-paniculata_contig17005:3255..33411691480824.1554117-CDS-H-paniculata_contig17005:3255..3341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 3256..3341 +
1622929346.1401649-CDS-H-paniculata_contig17005:4221..43341622929346.1401649-CDS-H-paniculata_contig17005:4221..4334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 4222..4334 +
1691480824.164447-CDS-H-paniculata_contig17005:4221..43341691480824.164447-CDS-H-paniculata_contig17005:4221..4334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17005 4222..4334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17005.3930.1

>prot_H-paniculata_contig17005.3930.1 ID=prot_H-paniculata_contig17005.3930.1|Name=mRNA_H-paniculata_contig17005.3930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MLKIVRTSLGSILHPCHNLTDTAVKHVIPALLLGASLTGASPTDLTNVFG
AVPVFALDSSVGASSVSDSKINRGAASTGDRGARTTVTRGVNIEGADFHG
KDMSGVSFQQSLVRGTNFNNAKLVAAGFFDADLSRCTFESANLNQANLEL
ANLNGAILKNAVVTEAYVSGATNMTPANIEGADFTDTFLRKDQVLYLCGI
AEGTNPVTGVDTRDSLGCD*
back to top

mRNA from alignment at H-paniculata_contig17005:226..5152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17005.3930.1 ID=mRNA_H-paniculata_contig17005.3930.1|Name=mRNA_H-paniculata_contig17005.3930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4927bp|location=Sequence derived from alignment at H-paniculata_contig17005:226..5152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAATAATACTCGTAAATGAAATCGACAGGGGTGAGTACTTGATTGTTT
GTGTTCGCTTATTCTGAAACCCTGGCGAATATTTTTAATTGTCGTGGCGA
ATACGCCAATATTCGCATTTGTCCAGAGGGTGAAACGTAGCGAAGAGTGG
ACGAAAGTATAAAAAGCGCGGGTAACCAATAATTTTACGACGTGCATTTA
TTTTTACAGGTGCTGGCTAGCTAGATGCTAAAAATCGTGCATACTTGATT
TCGTCACAAACCTGATCTGAAAGGTTAGAACCTCGCTTGGCTCGATCCTC
CACCCCTGTCACAATCTAACCGACACAGCCGTGAAGCATGTCATTCCTGC
GCTGCTCTTGGGAGCGAGTTTGACAGGGGCAAGCCCCACGGACCTGACGA
ACGTTTTCGGAGCGGTGCCGGTATTTGCCTTGGATTCCTCAGTGGGGGCG
TCCTCTGTCAGCGACTCTAAAATCAACCGGGGAGCGGCTAGCACAGGCGA
CAGAGGTGAGTGCGGACGTGCACGTGCATCGTATCCCATGCTCTCGGTCG
TTGGTTAGAGCCGTTGTAGACTTTAAACCTTGTCGTTTCCATGTTTACCC
TTTTTCGTTATTGTCATTCTTTAGCCGATTTTTGCCCTTCGACGGTGTTT
AGTTCCCAAAGCTGAAAAGAAATGCGACTTTCCGACACGGTCTCAGCCCG
TTACCGTTCCCTCTCTAAGAACAAATGAGTTAGAGAAGCCGGGTAATTGG
CAATGAGCGAAAACAAGACAGTGTATATCACGACCCTTGAGACTATGGCT
GAGGGCAACGTATCTAGCTGTATGTAGCTGAAAACACGCAACACCACCGG
ATCTCTAATGTAGTAGTTACGCCACGTCCACCCCAAAAAATCGCTTGAAT
AACGTCTAAAAACTAACCCGAGAAATGGCAATCATGGTCATGGATATACT
CGGATACATTTTGGAAAGCTGTTGTGAAACGGCCACCGTCAGCTTACCGT
ACATGTCACCTATTACGCGAGGATTTTCGCCCTTTGCATGCACAGGTTGT
GTATATATTTTTTTACATGGTTATGTGTGTGATTTGCGTAGGCCCTGAAT
TCGAATTTGATGCCGTTATCAGCTTGTATTTTGTTTGTATGAAACCACTC
CACTTATTTCATATTTGAGTCTGCTGTGCCCTCTTCTAATAATGAAATAT
TTACTAAACCCCCGCGTTGTTCCAGAATTCCTTGGCCTTCCTACCATCAT
CATCATTGTCGTTGGCGTCGGTGTTCTTGTCGGCTTTTCGTACAGGAGCT
CGAACCACCGTCACCCGCGGGGTGAACATAGAGGGCGCAGATTTTCACGG
CAAGGATATGTCTGGGGTTTCTTTTCAGCAGTCCCTCGTGCGAGGAACGA
ACTTCAACAACGCTAAGCTCGTCGCTGCAGGTGGGTCCATCCTCATTGCC
TCGCACGACATGTACAGTAAGCGCCTCATGCCTCCGTGTTAGGGATGTGC
GAATAACATGCAAATATCCAATCTAAGGGGGGCGAACAGCAGAACTGGTT
TGAAATTTTTCCCCAATTGTTCATCACAGCCAAGTCAGGCATCGCCAAAC
GTTGGTCTAGTTTATGTTTGGAGAGGTGTCTTCGACGGAGGGATGAGGTA
AATTTGCTAGGAACCTGCAATGAGTCAGGGGACAGTACCTTGGGGCACCT
GGTGCAGCGTGAAATGAAGTATACAGAGTGCTGTTGATGATGACCAAAAT
GACCCTCAGCCAATACTGCTGTCATTTTCCCACCAACTCTGTCTTTATAG
TCACGTCTACTTGCCGCCCTGTATATCGAGTTTGTCTACTCCTCTCGACC
TGTACCTTTGGATCACTTATGTTAGTGTTATACTCAGTGTAGCTTGCCCT
TAATCAGAACAGTTGGTCCAAGGAGCAACTGGCTCATGAATTTGCGCCTA
GTCAAATAGCCGCTCAACCACTGTGTTAGTGCAGGATGTCTCCTGTCCTC
CAGTCGGGGCCTGGACGATGTAGGTGGTGTGTGGAGAAAAACAGATAGTA
CAGTATGAAGACAATCAGATAGGCAGCAATACCGTACTTCTTCTGGTGCT
CTCTCCGGTCTTGACCAGCTTACATAGAATATATGCGGCGTCCTACCAGC
CACCAGAAGAAAGCCTAGCTTCCACTGATAAAATTCTGTGTTTCGAGGCA
GCGTGCAGCAGTTGCATCACCATCCGGTGGCCTTTAGCTGTTAAGTGCCG
TTACCCAGCATCCTCGCCATCTTGTGTTGCTTCAATAGTACCTCCATGCT
GTTTTCCTCTGCGTCAGCTGCTTTGTGCTGCAGCCAGCCATCACGCGGCA
GTCAGGCAGTCCCAATGGTACTGTATCAACCGCCCCAGCGATTCGAAAGA
AATCTACATGATTATGTTGTTAGGAGTTGGGGGGCATTTTGAGGTGGTCG
TAATGCCAACTTGATGGCCAAAAAACGATTGCCTTCATTGTGTTGATACT
CCAGCATTAACATAGACTTGCCCTTTATTGCAAGAATTCATGTAAGATAT
ATAAATCGGCGTGTACGCAAGATTTGCACCCCCTCAAAGCCTAATGCAAT
ATTGCTGACTATGCTGGCAACCGTGCACTTGATAATTGGGCCCTAAATGT
TTATATGTTAAGTATATATCCGTTTCCTTTCGTTATTCTGTGACGAGCAA
TTGTCCACGAAACACCTTCTTTTGTTATATTCTTTTGGCACAGGTTTTTT
CGACGCAGATCTTTCGAGATGCACCTTCGAATCGGCGAATCTCAACCAGG
CCAACCTGGAACTCGCCAATTTGAAGTGAGTGAAACATGGAGAACACAAC
CCTGGTGCTCTAGTCACTGCGTTTCAATCAATGATTTGCCCTGTGCTGCT
CGGGTTCCACGCATACGTAGAAATACTCCCGCGGTAAAGGTCTCGAAGCC
TGCATTGCTCCAAGACTTGAACGGGCTTTCCATTGCCCCGGTGGAACGTT
TTGTTTTCGTTCTGGTGCTCTTGATCGCAGTGGTGCGATTTTGAAGAACG
CGGTGGTGACCGAGGCGTACGTGTCGGGCGCGACCAATATGACGCCAGCA
AATATTGAGGGCGCGGGTGAGTGAATATGCCGGCTTCAGGTGGCCTTGAT
CCACTCGTCGCCCTAGCTTTCTCCACAGACCATGCGCCCTGTTGTCAAAG
CGATTGTCATCAAATACAATGATTCGGTAGGGTCGTTGGTTCAAATGACG
AGGGTCACGACATTTACCCTTGAAATTCCAGGAGAAACGCGAGTACGCAG
CAAAAGTGCCTGTGGGAGAGAGCAGAGTACCTTCCGTGAGTTACGGCTTG
CAATTTCAACTTTGACAAGTGCGTGGGACTGCCGCCGCCACCGCGCGATA
GGCACGTACCAAGGCATAACACCTCACGTTTTTTACTGTTGTCCACTGAT
TCTGGTGCCATTGGATCAGGGTTTTCTGCCTCGAGGGTGTGCGTTGGTTT
GTCCCTCGGTTACTACGTACTGGTGAACAGTACCTATTTCATTTTGGTTG
AATGGAAGTGTGCACAGTTTTGCGTTCTGAGAATGGCTCTATGCGTTGAC
CGCGAGTCCGACGGATTGGACTAGCATGTTGAAGAGGTGGGGAATAACGT
GTCCTCGTTTCTACCTATTCGCATGACCGCATTGCTTGTACCTTTATCAT
TTATTGTAAACAAAATTTACGGAGCAGGAGAGATCCGACAGAGTGTCACA
ACCCAAACGCCTCAGAATCCACATATTTCTTTCATGTATTTTTGTGACGA
ATATTTTAGCAGAGAGTGGGACAATTTCCAAACGAGCGTTTTCGTAGAGG
ACAAACCATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTTTTCTGAAATGCTCATTTGTTCCCACCGCTTTTTTGGTT
CGCACGCGTGCTCTGTTACGCGTATGCATGTCCTGTGACTCGACAGACTT
CACCGATACGTTCTTGAGGAAAGATCAGGTTCTTTATCTCTGCGGGATTG
CAGAAGGAACGAATCCGGTGACCGGAGTCGACACCCGGGATAGCTTGGGC
TGCGATTGACTTCGAATCTCGCAGTGTTGATTTCTCTCTGTCGTTGACCT
TGTCGAACATTCATTAGTCAGACTGATCAGATCAATCCAACCCGAGGTTG
TAGAGAGGAATTCCAGTAGGTTCGGTTCTCCCCCATGGCACTCCAAATTT
CGCAGGGCTTGTCATGAGACTACGTGACGGGATGGGACACTATCCTCCAG
AAAACTGACGGGACGATCCCGTGAAAATTCCGTGCCGTTCGCTACGAAGA
TAACAGCGCGCGATATATCGTCATCTGTTGTACATGTTGCGAATTCTATG
ATTATTGCATCCATCATAGTTGCATTCATGAGAGTATAGTGGTTTTCGAT
GCTCCTCACCTCTTGACGCCATCAAGAGTAATAATGATGGCAAAATATAG
AATGCTCTATGTATATATATTTACGTTCCGAAAATGTGCAGACTGTGGTG
ATCACTGCTGTGCGGTCTTGTGGAGTTTCTCACACACATAGGTTATTGTT
TCCTGTTATTGACTATGCTGTACAATACTCTCAGAGCGGTACGGCTGGGG
TGGTAGAAGTAGTCCTTGGCAATGGTCTGGTTGGTCTCTTGTATTTGCTG
TATATTGCTGTACGTCAGGAAAAGCCCTGGGTCGATACAAGTCTATCAGT
TGGTGGGGTGGTCACACGGTCCGTGCTACCTGCTCCCAGCTCAAACTGAG
GCTAAATTATACAAACCCGGGGATCGGGGATGGAACCGTTACATTAGATA
ATGACTGTCACATTCCGCAATCAACATCTCATAACAAGACTCGATGGAAT
AAAAATAATAAAATCGGACAAAAAGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17005:226..5152+

>mRNA_H-paniculata_contig17005.3930.1 ID=mRNA_H-paniculata_contig17005.3930.1|Name=mRNA_H-paniculata_contig17005.3930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig17005:226..5152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAAAAATCATGCTAAAAATCGTTAGAACCTCGCTTGGCTCGATCCT
CCACCCCTGTCACAATCTAACCGACACAGCCGTGAAGCATGTCATTCCTG
CGCTGCTCTTGGGAGCGAGTTTGACAGGGGCAAGCCCCACGGACCTGACG
AACGTTTTCGGAGCGGTGCCGGTATTTGCCTTGGATTCCTCAGTGGGGGC
GTCCTCTGTCAGCGACTCTAAAATCAACCGGGGAGCGGCTAGCACAGGCG
ACAGAGGTTAGAACCTCGCTTGGCTCGATCCTCCACCCCTGTCACAATCT
AACCGACACAGCCGTGAAGCATGTCATTCCTGCGCTGCTCTTGGGAGCGA
GTTTGACAGGGGCAAGCCCCACGGACCTGACGAACGTTTTCGGAGCGGTG
CCGGTATTTGCCTTGGATTCCTCAGTGGGGGCGTCCTCTGTCAGCGACTC
TAAAATCAACCGGGGAGCGGCTAGCACAGGCGACAGAGGAGCTCGAACCA
CCGTCACCCGCGGGGTGAACATAGAGGGCGCAGATTTTCACGGCAAGGAT
ATGTCTGGGGTTTCTTTTCAGCAGTCCCTCGTGCGAGGAACGAACTTCAA
CAACGCTAAGCTCGTCGCTGCAGGAGCTCGAACCACCGTCACCCGCGGGG
TGAACATAGAGGGCGCAGATTTTCACGGCAAGGATATGTCTGGGGTTTCT
TTTCAGCAGTCCCTCGTGCGAGGAACGAACTTCAACAACGCTAAGCTCGT
CGCTGCAGGTTTTTTCGACGCAGATCTTTCGAGATGCACCTTCGAATCGG
CGAATCTCAACCAGGCCAACCTGGAACTCGCCAATTTGAAGTTTTTTCGA
CGCAGATCTTTCGAGATGCACCTTCGAATCGGCGAATCTCAACCAGGCCA
ACCTGGAACTCGCCAATTTGAATGGTGCGATTTTGAAGAACGCGGTGGTG
ACCGAGGCGTACGTGTCGGGCGCGACCAATATGACGCCAGCAAATATTGA
GGGCGCGGTGGTGCGATTTTGAAGAACGCGGTGGTGACCGAGGCGTACGT
GTCGGGCGCGACCAATATGACGCCAGCAAATATTGAGGGCGCGGACTTCA
CCGATACGTTCTTGAGGAAAGATCAGGTTCTTTATCTCTGCGGGATTGCA
GAAGGAACGAATCCGGTGACCGGAGTCGACACCCGGGATAGCTTGGGCTG
CGATTGAACTTCACCGATACGTTCTTGAGGAAAGATCAGGTTCTTTATCT
CTGCGGGATTGCAGAAGGAACGAATCCGGTGACCGGAGTCGACACCCGGG
ATAGCTTGGGCTGCGATTGA
back to top