prot_H-paniculata_contig170.3928.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig170.3928.1
Unique Nameprot_H-paniculata_contig170.3928.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1962
Homology
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BLAST of mRNA_H-paniculata_contig170.3928.1 vs. uniprot
Match: D7FIT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT6_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 4.230e-28
Identity = 90/195 (46.15%), Postives = 115/195 (58.97%), Query Frame = 0 
Query:    3 SSWTLDACAPVAVLVVFLARQIVISSNRSFWSEKALTLRSSIDTNASWY-WGKRVLLLRFPWGMEAGVLVTAFMAAARVRTRAENITVPMAAVVPGLVEGVILSCWGAFGGACLACLLVQAPAFVLTEELALPSAAVAWALVGGRWWGADVSTPG----LRALLSCPGIHHGLVFIAEAFRASLVCEAVDAAREV 192
            S W L+  A  + +V FL RQ+V+ SNR+FW+ K L          +W   G++  LL F +G EAG    A ++AARVR  AE  T   A  +PGL  G +L+C GAFGG  LACL+    + VLT  +  P+A  AW LVGGR W      PG    LR LLS P  HH LVF++EAFRASL+C A+D AR+V
Sbjct:  783 SLWWLETWALPSAVVAFLVRQVVLESNRAFWATKVL---------GAWVSHGRQAFLLSFRFGPEAGAFAAAVVSAARVRHLAEMRT--PAYPLPGLALGSLLTCLGAFGGNVLACLVTGTRSMVLTGFVVWPAAVAAWVLVGGRLW---APRPGRAFSLRDLLSLPVAHHLLVFLSEAFRASLLCGAIDVARDV 963
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BLAST of mRNA_H-paniculata_contig170.3928.1 vs. uniprot
Match: A0A6H5JCS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS4_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.590e-18
Identity = 69/143 (48.25%), Postives = 87/143 (60.84%), Query Frame = 0 
Query:   54 KRVLLLRFPWGMEAGVLVTAFMAAARVRTRAENITVPMAAVVPGLVEGVILSCWGAFGGACLACLLVQAPAFVLTEELALPSAAVAWALVGGRWWGADVSTPG----LRALLSCPGIHHGLVFIAEAFRASLVCEAVDAAREV 192
            ++  LL F +G EAG    A ++AARVR  AE      A  +PG+  G +L+C GAFGG  LACL+    + VLTE +  P+A  AW LVGGR        PG    LR LLS P +HH LVF++EAFRASL+C A+D AR V
Sbjct:  412 RQAFLLSFRFGPEAGAFAAAVVSAARVRHLAEMRR--PAYPLPGVALGSLLTCLGAFGGNVLACLVTGTRSMVLTEFVVWPAAVAAWMLVGGR--------PGRAFSLRDLLSLPVVHHLLVFLSEAFRASLLCGAIDVARTV 544
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig170.3928.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIT6_ECTSI4.230e-2846.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCS4_9PHAE4.590e-1848.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 624..648
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 131..149
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 219..623
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..78
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 649..1937
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..119
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 120..130
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 199..218
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 1938..1960
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 150..198
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1961..1961
NoneNo IPR availableTMHMMTMhelixcoord: 98..120
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 56..78
NoneNo IPR availableTMHMMTMhelixcoord: 1938..1960
NoneNo IPR availableTMHMMTMhelixcoord: 199..218

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig170contigH-paniculata_contig170:26420..42624 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig170.3928.1mRNA_H-paniculata_contig170.3928.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig170 26412..42954 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig170.3928.1 ID=prot_H-paniculata_contig170.3928.1|Name=mRNA_H-paniculata_contig170.3928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1962bp
MGSSWTLDACAPVAVLVVFLARQIVISSNRSFWSEKALTLRSSIDTNASW
YWGKRVLLLRFPWGMEAGVLVTAFMAAARVRTRAENITVPMAAVVPGLVE
GVILSCWGAFGGACLACLLVQAPAFVLTEELALPSAAVAWALVGGRWWGA
DVSTPGLRALLSCPGIHHGLVFIAEAFRASLVCEAVDAAREVMAGDRGWT
LAVTVGVVAGCGGVFLHFDRGLSALAGGVPWTVQSAMYGAAAYYYMVGDV
ETGDGSPGGNTATAAPRLALEAAASLVSILYTSTALIKTHLGPRFNPFYP
GHRLAYILLGLKPPLVYRPSPQRFPVREEERLATQGDLSTIQQANSHAIQ
GYSPPRQHHFPPRQAGYSMKSQQRDQQLEHERRQPAGLFPLLPFSSTSLL
APRGGEGEACCIDFGATRLSGGSGRGLSSLSLAAFRPDRRRADEAGQVSE
DQSEGNAEEPRGAGRQADGLVPFRESQSQFYSRSSSLLSSRGSGLSSSSR
SSRLLLMPRPSTGSNSHGPTRGGTANDKGVTSFGSSSRSGGRGHDGGVTA
DHDDASQRRRRSTASSRRYPNSSCRRERGRGSRRSSASGFGARSMAPAES
ASRDGGVARTGDDGMRTLRLGIGAARAVVLTVSASLVIWIGRLLVYILSD
QSVPLRSARINLSIKLGSPGVAQARDTTVAPPDSGKLNALGEHRVTGTPL
CPLDGGAGVSTEALLLDVRALQQEAALLLPGDKVIPGIDGAGRGDGSKGG
VGTECTDGGFVSPLPSSFYLMKREASFRRPPPPESADGVSTADVSPPTFW
SSAEYSPGRSTPGQGSRDRNVDVVDACPTPAQLLSDSVEEKLSRTTADVS
QMRTDFENFQEISEESDDTLAEVSDARVDGDGLGSVAVRNGAAPAFYDEE
MAQVEAAAAPGEHEATIPQKSCEEYDLFGADRFLSDGGTSVDKERELTNP
RLLLNLPLSQHEKLLHVLHTSAVVASGTVDGTTVKLEVSETFAHNLKDYV
GDEGARAARISRTILRSHRPRSLDTFKARGSAPRDDGDNRSSGGSGSGGL
HEGTDGDIGVMQSAETHLKIDSRSDGGWRASFSDRPPLNEDAGVSFSSKE
RIGAESHRTRDGTVAVALGVDLVQPTSTATIFDTDTGASRASCTLAESET
CGSSEDEGMTSGECAVPPAGLSTPFEVPERFIGSSTLVTGAVPEDSGSRS
AKGLLEVREEYVGARDSPDSIAETNLLDSDVVADGAEAAPGSVYSPHRSL
QNTELLPKGDLEWMITKGAMDSGHATVQVTAESSSSSAKYDVDQAPQFGS
GRDLSAIPYEELSRGPQEEGGSGIVILPDVDLDVTFHPLEAFRRALGTYG
MSALPWAPTSTLSSEKTSPKREEEAKSHPTISAPSSGTTTKTATAHPDVP
SSSSYSSRSLYDDNESISSTGEVSQTPTPLPQVSTPEHSYIEQAFARELS
NAEKEKQQSTICGTDEMEVEYVVADSAVRRSARKERADGDRDKHRRDPAE
AQDVEARGRWWGRLRGWHEEKKVEKTDHRIFDSTPTTSAAEVNKGDIEDR
QTDKPSKGEMEPTTGAVTISTEKPTVASFVRGEDGSPESSNRQGILSGGR
GECGHVEEDSVDLGVGTCESERDGIKTNPRDLGSAEEPNNNTRDAAKIEG
DSGDERLSEEPTRPETREKRTGKPDDALGGPETEHSNVDHDALSGVQQPD
QLSEEAGKLENDEVRTTSKDDDDVEGERDVVVERLSRSAQQGQEDGGPDA
ADKLGAAQQPMEFNNIMCDAKSGRNVAAESERRLAKQERDGVHDASHETD
TPRSSWPLEFDGDERRNDIRDAKDSLRHINVEGQLTQGKEESREMHKGNG
DAGPERREKQKKPKGVLDAHEKSYRLEKHERQGRGSKGGKSNVVGKSYRP
QEHQDVGRDVEKRTDHILNERTPDRTAHSDPPKMGFKVVVGTVAALVYYA
VWAAIAAVVLG*
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