mRNA_H-paniculata_contig170.3928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig170.3928.1 vs. uniprot
Match: D7FIT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT6_ECTSI) HSP 1 Score: 137 bits (344), Expect = 3.510e-28 Identity = 90/195 (46.15%), Postives = 115/195 (58.97%), Query Frame = 3
Query: 15 SSWTLDACAPVAVLVVFLARQIVISSNRSFWSEKALTLRSSIDTNASWY-WGKRVLLLRFPWGMEAGVLVTAFMAAARVRTRAENITVPMAAVVPGLVEGVILSCWGAFGGACLACLLVQAPAFVLTEELALPSAAVAWALVGGRWWGADVSTPG----LRALLSCPGIHHGLVFIAEAFRASLVCEAVDAAREV 584
S W L+ A + +V FL RQ+V+ SNR+FW+ K L +W G++ LL F +G EAG A ++AARVR AE T A +PGL G +L+C GAFGG LACL+ + VLT + P+A AW LVGGR W PG LR LLS P HH LVF++EAFRASL+C A+D AR+V
Sbjct: 783 SLWWLETWALPSAVVAFLVRQVVLESNRAFWATKVL---------GAWVSHGRQAFLLSFRFGPEAGAFAAAVVSAARVRHLAEMRT--PAYPLPGLALGSLLTCLGAFGGNVLACLVTGTRSMVLTGFVVWPAAVAAWVLVGGRLW---APRPGRAFSLRDLLSLPVAHHLLVFLSEAFRASLLCGAIDVARDV 963
BLAST of mRNA_H-paniculata_contig170.3928.1 vs. uniprot
Match: A0A6H5JCS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS4_9PHAE) HSP 1 Score: 103 bits (257), Expect = 4.930e-18 Identity = 69/143 (48.25%), Postives = 87/143 (60.84%), Query Frame = 3
Query: 168 KRVLLLRFPWGMEAGVLVTAFMAAARVRTRAENITVPMAAVVPGLVEGVILSCWGAFGGACLACLLVQAPAFVLTEELALPSAAVAWALVGGRWWGADVSTPG----LRALLSCPGIHHGLVFIAEAFRASLVCEAVDAAREV 584
++ LL F +G EAG A ++AARVR AE A +PG+ G +L+C GAFGG LACL+ + VLTE + P+A AW LVGGR PG LR LLS P +HH LVF++EAFRASL+C A+D AR V
Sbjct: 412 RQAFLLSFRFGPEAGAFAAAVVSAARVRHLAEMRR--PAYPLPGVALGSLLTCLGAFGGNVLACLVTGTRSMVLTEFVVWPAAVAAWMLVGGR--------PGRAFSLRDLLSLPVVHHLLVFLSEAFRASLLCGAIDVARTV 544 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig170.3928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig170.3928.1 >prot_H-paniculata_contig170.3928.1 ID=prot_H-paniculata_contig170.3928.1|Name=mRNA_H-paniculata_contig170.3928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1962bp MGSSWTLDACAPVAVLVVFLARQIVISSNRSFWSEKALTLRSSIDTNASWback to top mRNA from alignment at H-paniculata_contig170:26412..42954+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig170.3928.1 ID=mRNA_H-paniculata_contig170.3928.1|Name=mRNA_H-paniculata_contig170.3928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16543bp|location=Sequence derived from alignment at H-paniculata_contig170:26412..42954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig170:26412..42954+ >mRNA_H-paniculata_contig170.3928.1 ID=mRNA_H-paniculata_contig170.3928.1|Name=mRNA_H-paniculata_contig170.3928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=11772bp|location=Sequence derived from alignment at H-paniculata_contig170:26412..42954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |