mRNA_H-paniculata_contig17.3918.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17.3918.1
Unique NamemRNA_H-paniculata_contig17.3918.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17.3918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17contigH-paniculata_contig17:12990..13655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-06_008540.1
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929344.3567603-CDS-H-paniculata_contig17:12989..130421622929344.3567603-CDS-H-paniculata_contig17:12989..13042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 12990..13042 +
1691480823.3743653-CDS-H-paniculata_contig17:12989..130421691480823.3743653-CDS-H-paniculata_contig17:12989..13042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 12990..13042 +
1622929344.3709726-CDS-H-paniculata_contig17:13468..136551622929344.3709726-CDS-H-paniculata_contig17:13468..13655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 13469..13655 +
1691480823.3828163-CDS-H-paniculata_contig17:13468..136551691480823.3828163-CDS-H-paniculata_contig17:13468..13655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 13469..13655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17.3918.1prot_H-paniculata_contig17.3918.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17 12990..13655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17.3918.1

>prot_H-paniculata_contig17.3918.1 ID=prot_H-paniculata_contig17.3918.1|Name=mRNA_H-paniculata_contig17.3918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
VACDCLYRHPGVKHPLNSSAGFPQVMHINPEMSGPVQFMTGKRGVVPLCV
AFAGAEFIVYGTTTIQDTSYWHVVVEVCV*
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mRNA from alignment at H-paniculata_contig17:12990..13655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17.3918.1 ID=mRNA_H-paniculata_contig17.3918.1|Name=mRNA_H-paniculata_contig17.3918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=666bp|location=Sequence derived from alignment at H-paniculata_contig17:12990..13655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCATGCGACTGCCTCTATCGCCACCCTGGAGTAAAACATCCGTTAAA
CAGGTGACAGCGATTGTAACAGTAACTGTCAACGGTGGGAAAGCGCAAGG
AAAGCAAGGAGAGTGAGAATGAGCCCTTTTATTCATGTATTTGCCTAGCC
CGCACATACCGTGTATGCAACACGATCAGCGAGCATGGAGCACGGTAATG
AGTTTAAATCTTGGACTGTTGGTGCTAACTACTACGTCGCACTTTATCCT
CCATCGAACATGACGTAGCATTGCTGTGGTCCAGACGCGTGTGCTCTATT
GATATCTAGTTGAGTTCCGAAGACAAATTGTACTGGTAGATACCAATCTG
CGCTCTTGGTTCAATTTGAGACACTTTTCATCATGCTATTTGCCTGCCGC
TGCCTCATTTCATTGCCCCCGTAATTTTCCGTTGTTCTGGTGCCCGACCT
TCCCCTGCCCACGCCAACTCCTGGGACAGTTCAGCTGGTTTCCCGCAAGT
GATGCACATCAATCCGGAAATGAGTGGCCCGGTGCAGTTCATGACAGGCA
AACGCGGCGTGGTACCCTTATGTGTTGCGTTCGCGGGGGCTGAGTTCATC
GTTTACGGAACTACTACTATTCAAGACACCAGCTACTGGCACGTTGTCGT
CGAGGTATGTGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17:12990..13655+

>mRNA_H-paniculata_contig17.3918.1 ID=mRNA_H-paniculata_contig17.3918.1|Name=mRNA_H-paniculata_contig17.3918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig17:12990..13655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCATGCGACTGCCTCTATCGCCACCCTGGAGTAAAACATCCGTTAAA
CAGGTGGCATGCGACTGCCTCTATCGCCACCCTGGAGTAAAACATCCGTT
AAACAGTTCAGCTGGTTTCCCGCAAGTGATGCACATCAATCCGGAAATGA
GTGGCCCGGTGCAGTTCATGACAGGCAAACGCGGCGTGGTACCCTTATGT
GTTGCGTTCGCGGGGGCTGAGTTCATCGTTTACGGAACTACTACTATTCA
AGACACCAGCTACTGGCACGTTGTCGTCGAGGTATGTGTGTGATTCAGCT
GGTTTCCCGCAAGTGATGCACATCAATCCGGAAATGAGTGGCCCGGTGCA
GTTCATGACAGGCAAACGCGGCGTGGTACCCTTATGTGTTGCGTTCGCGG
GGGCTGAGTTCATCGTTTACGGAACTACTACTATTCAAGACACCAGCTAC
TGGCACGTTGTCGTCGAGGTATGTGTGTGA
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