mRNA_H-paniculata_contig17.3926.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17.3926.1
Unique NamemRNA_H-paniculata_contig17.3926.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17.3926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17contigH-paniculata_contig17:65606..67084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size196
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17.3926.1prot_H-paniculata_contig17.3926.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17 65606..67059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929344.22913-CDS-H-paniculata_contig17:65605..657101622929344.22913-CDS-H-paniculata_contig17:65605..65710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 65606..65710 -
1691480823.3237453-CDS-H-paniculata_contig17:65605..657101691480823.3237453-CDS-H-paniculata_contig17:65605..65710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 65606..65710 -
1622929344.2445989-CDS-H-paniculata_contig17:66993..670591622929344.2445989-CDS-H-paniculata_contig17:66993..67059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 66994..67059 -
1691480823.3338304-CDS-H-paniculata_contig17:66993..670591691480823.3338304-CDS-H-paniculata_contig17:66993..67059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 66994..67059 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929344.2600253-UTR-H-paniculata_contig17:67059..670841622929344.2600253-UTR-H-paniculata_contig17:67059..67084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17 67060..67084 -
1691480823.3463697-UTR-H-paniculata_contig17:67059..670841691480823.3463697-UTR-H-paniculata_contig17:67059..67084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17 67060..67084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17.3926.1

>prot_H-paniculata_contig17.3926.1 ID=prot_H-paniculata_contig17.3926.1|Name=mRNA_H-paniculata_contig17.3926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MVKDDILVELDRQKGLLNLLVEELLRYRRKAKAAVQDAGGASGSVGGAAN
ASASSGG
back to top

mRNA from alignment at H-paniculata_contig17:65606..67084-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17.3926.1 ID=mRNA_H-paniculata_contig17.3926.1|Name=mRNA_H-paniculata_contig17.3926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1479bp|location=Sequence derived from alignment at H-paniculata_contig17:65606..67084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGTTGTTGGTGGGACCGCGGAGATGGTCAAGGACGACATTCTCGTGG
AATTAGACAGGCAGAAGGGCCTTCTCAACCTTCTCGTCGAGGTAACAGTG
ACAGTGACACGCCAGATATATACATTTTAACTACATTACGTGAGATGGAG
GGGAGGGGAGGGGAGGGAACCCATGCTGTTTGAACGGACTTGGCCGATAT
TCGGGTTTTGCTGTTTGGTAGATGGTCAAGATCCTTTTCGTATCATAACT
CATTTTGACTCTATCATGATCAAGTACCGGAAGTTCTCGCGCGTCTTCGC
CTAGGCACGATGATATGGAGTACGACTTTATCAGTTCCATATGTAGTGTA
CTGTAGGTAAACATGAAATAGTTTGCAAATGAACGATGACTGACGCCCCT
GAATAACCCCGCTCCCCTCCCTTCCCCCTCCATTGTAAGTACCTGAGTTC
TCTTTCCTAAGTCAACCTGCTTGCCACAGTTACTTGACCCCATAGTATAG
TACCCATGTTGAGGTTGTGTAGCTGACTTGAATCTGCACTTGTGTAATGA
CATTTTCGAGCAAAATTAGAGGAGTAACGAGCGTACCCATGTGTTGCATG
CCGTTGTTATTGGACTAATGATCACGTGTCCACGGGAGGACGGAGTTTTG
GCGTAAGATGGAGGAAGACATTTGTATACGGTGGTGGAAAATAGGTGTGA
GATGTATAGGGTGAAGTGAAGTCAGTTGGCGTTGGATGCACAAAGGGGGG
CTAAATGTTGTAAAATGGAAGTTTTTAGATTTGAACATTTTCATCGTGTG
TGTGTGTGTGTGTGTGTGACCTATTCTGGTGGTCAGAGGTTGAACAGTAT
GGCGGAGTTATGTGCAAGTGAGATGGCTGTTTGGCAAGTGGGCATGTCTG
AGGGAGTGTTTTTTTCCCCCGGTAGGATAGATAGTCTCCTGCGGTATGGA
TGATTCACTCACGTGGGGAGTTAGTCGTGCTACACCACGCGCACGAGTCT
GCACAGTAGGAGAACGACTTGCAAACGCCTGAGGAAATCGTCAAGAACCT
AGTAATTACACGCGGAATTCATCGAGACCCCTTCGAGAAATAACACATTT
ATCGACAGTATATTGCTGTGGCGTGTGGTAAAACATGCGCATGTGTAACA
CGTCACACACACAAACACATAGAGAGAGAATACTGCACGTAGACGACGAA
AACTCTTTCAAAACCCCCAACACCTACACACGAAAGCAAGGATTGTTCAC
CCCACAGTTGACCTATCACAGTATGCATGAACGTACAATTTTCGCAATAT
ACTGATACGTCCTTGGTACCATTCTTGTTGCCATCGCTGCTACTGCTGTT
GCTGTTTTTTTTTGTTTTTTTTAGGAACTCCTCCGATATCGACGAAAGGC
GAAGGCCGCTGTTCAAGACGCCGGTGGGGCTAGCGGTTCTGTCGGCGGCG
CTGCTAATGCTAGCGCAAGTAGTGGAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17:65606..67084-

>mRNA_H-paniculata_contig17.3926.1 ID=mRNA_H-paniculata_contig17.3926.1|Name=mRNA_H-paniculata_contig17.3926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig17:65606..67084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCAAGGACGACATTCTCGTGGAATTAGACAGGCAGAAGGGCCTTCT
CAACCTTCTCGTCGAGATGGTCAAGGACGACATTCTCGTGGAATTAGACA
GGCAGAAGGGCCTTCTCAACCTTCTCGTCGAGGAACTCCTCCGATATCGA
CGAAAGGCGAAGGCCGCTGTTCAAGACGCCGGTGGGGCTAGCGGTTCTGT
CGGCGGCGCTGCTAATGCTAGCGCAAGTAGTGGAGGGGAACTCCTCCGAT
ATCGACGAAAGGCGAAGGCCGCTGTTCAAGACGCCGGTGGGGCTAGCGGT
TCTGTCGGCGGCGCTGCTAATGCTAGCGCAAGTAGTGGAGGG
back to top