mRNA_H-paniculata_contig17.3919.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17.3919.1
Unique NamemRNA_H-paniculata_contig17.3919.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17.3919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17contigH-paniculata_contig17:18823..19247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.9416156-CDS-H-paniculata_contig17:18822..188491622929343.9416156-CDS-H-paniculata_contig17:18822..18849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 18823..18849 +
1691480823.2241414-CDS-H-paniculata_contig17:18822..188491691480823.2241414-CDS-H-paniculata_contig17:18822..18849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 18823..18849 +
1622929343.977026-CDS-H-paniculata_contig17:19091..192471622929343.977026-CDS-H-paniculata_contig17:19091..19247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 19092..19247 +
1691480823.2343407-CDS-H-paniculata_contig17:19091..192471691480823.2343407-CDS-H-paniculata_contig17:19091..19247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 19092..19247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17.3919.1prot_H-paniculata_contig17.3919.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17 18823..19247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17.3919.1

>prot_H-paniculata_contig17.3919.1 ID=prot_H-paniculata_contig17.3919.1|Name=mRNA_H-paniculata_contig17.3919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
YSSKVGSIVVSFIRVAIECYRFARGVVQLVDSVTRIVIYRALWLSSFVLP
NQFYNAVLWVR
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mRNA from alignment at H-paniculata_contig17:18823..19247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17.3919.1 ID=mRNA_H-paniculata_contig17.3919.1|Name=mRNA_H-paniculata_contig17.3919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=425bp|location=Sequence derived from alignment at H-paniculata_contig17:18823..19247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGCTCAAAAGTTGGGAGTATTGTGGCAAGTGGTTCAAACTAATAGTA
TCCTGAGCCATAAGCCCTCAACATGCACCCTGAAGAATTGAAGCGGCACT
GAACACCGTACCTGCCGCGAAAGTGCTCAGAATTGGACTAGGGTGTTCAG
TTTGTCCTGGGTAAAACATTGTGATATTGCTTGGATGATTGGTATGTGGC
TGTCTTGTCACTTAACATTTGTTTTAGTCTAGCCCTCCATCTCAACCTCT
GAACGGTCTCAACGTGCAGGTTAGCTTCATACGCGTGGCGATCGAGTGCT
ACAGATTTGCGCGTGGTGTAGTGCAATTGGTGGACTCGGTCACTCGGATT
GTGATTTACCGCGCCCTCTGGTTATCCAGCTTTGTGCTGCCAAATCAGTT
CTACAATGCCGTCCTCTGGGTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17:18823..19247+

>mRNA_H-paniculata_contig17.3919.1 ID=mRNA_H-paniculata_contig17.3919.1|Name=mRNA_H-paniculata_contig17.3919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig17:18823..19247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGCTCAAAAGTTGGGAGTATTGTGTACAGCTCAAAAGTTGGGAGTAT
TGTGGTTAGCTTCATACGCGTGGCGATCGAGTGCTACAGATTTGCGCGTG
GTGTAGTGCAATTGGTGGACTCGGTCACTCGGATTGTGATTTACCGCGCC
CTCTGGTTATCCAGCTTTGTGCTGCCAAATCAGTTCTACAATGCCGTCCT
CTGGGTGAGGGTTAGCTTCATACGCGTGGCGATCGAGTGCTACAGATTTG
CGCGTGGTGTAGTGCAATTGGTGGACTCGGTCACTCGGATTGTGATTTAC
CGCGCCCTCTGGTTATCCAGCTTTGTGCTGCCAAATCAGTTCTACAATGC
CGTCCTCTGGGTGAGG
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