mRNA_H-paniculata_contig16990.3914.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16990.3914.1
Unique NamemRNA_H-paniculata_contig16990.3914.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: D7FSD7_ECTSI (Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.380e-18
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPFHDLAPG 168
            CLGWT++ G+R+PQC PLGGQSSWAS+G  G G ++ V A++GMD+TS FHD APG
Sbjct:  308 CLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 363
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: A0A7S4DDP0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDP0_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 2.130e-12
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPFHDLAPG 168
            CL W +V G R PQC+PLGGQS W +LGP   GR  AV A+AGMD+ + FHD A G
Sbjct:    1 CLAWEDVDGRRDPQCLPLGGQSVWGTLGPRDAGRP-AVLAVAGMDSAAFFHDRADG 55
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: A0A7S2V4V2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.860e-11
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPFHDLAP 165
            CL W ++ GER PQC+PLGG S+WASL  P D  K  VF  A +D+ + FHD  P
Sbjct:   19 CLAWQDIDGERDPQCLPLGGLSTWASLPGPPDPVKPKVFLTAAIDSATLFHDQVP 73
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: G4ZR63_PHYSP (Nicastrin n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZR63_PHYSP)

HSP 1 Score: 65.5 bits (158), Expect = 4.870e-11
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPFHDLAPG 168
            CL +TN+ G R+P+C P+GGQSSWA  G    G  E V A+AGMDATS  H LAPG
Sbjct:  212 CLNFTNIYGNRSPKCDPIGGQSSWAMRGNLKSG--EIVMAMAGMDATSVSHVLAPG 265
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: A0A6A3S396_9STRA (Nicastrin n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3S396_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.660e-11
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPFHDLAPG 168
            CL +TN+ G R+P+C P+GGQSSWA  G      KE V A+AGMDATS  H LAPG
Sbjct:  212 CLNFTNIYGHRSPKCDPIGGQSSWAMRG--NLKSKEIVMAVAGMDATSISHVLAPG 265
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: H3GV47_PHYRM (Nicastrin n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GV47_PHYRM)

HSP 1 Score: 64.3 bits (155), Expect = 1.240e-10
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPFHDLAPG 168
            CL +TN+ G+R+P+C P+GGQSSWA  G      +E V A+AGMDATS  H LAPG
Sbjct:  210 CLNFTNIYGKRSPKCDPIGGQSSWAMRG--NLESEEIVMAMAGMDATSLSHVLAPG 263
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: V9FWN4_PHYPR (Nicastrin n=11 Tax=Phytophthora TaxID=4783 RepID=V9FWN4_PHYPR)

HSP 1 Score: 63.2 bits (152), Expect = 3.180e-10
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPFHDLAPG 168
            CL +TN+ G R+P+C P+GGQSSWA  G    G  E V A+AGMDA S  H LAPG
Sbjct:  208 CLSFTNIYGNRSPKCDPIGGQSSWAMRGNLKSG--EIVMAMAGMDANSLSHVLAPG 261
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: A0A225VLQ2_9STRA (Nicastrin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLQ2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.940e-10
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPFHDLAPG 168
            CL + N+ G+R+ +C P+GGQSSWA  G       E + A+AGMDATSP H LAPG
Sbjct:  214 CLNFVNIYGDRSSKCDPIGGQSSWAMRG--NLKSDEIIMAMAGMDATSPSHVLAPG 267
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: M4BVK0_HYAAE (Nicastrin n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVK0_HYAAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.830e-9
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPFHDLAPG 168
            CL + N+ G R+P+C P+GGQSSWA  G       E V A+AGMDATS  H LAPG
Sbjct:  217 CLEFVNIYGHRSPRCDPIGGQSSWAMRG--NLKSDEIVMAMAGMDATSLSHVLAPG 270
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BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Match: A0A835YYT6_9STRA (Nicastrin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.070e-6
Identity = 27/62 (43.55%), Postives = 32/62 (51.61%), Query Frame = 1 
Query:    1 CLGWTNVKGERAPQCMPLGGQSSWASLGPP-------GDGRKEAVFALAGMDATSPFHDLAP 165
            CL W +  G R PQC+P+GGQSSW  L  P         G K  V   A MD+ S FH+  P
Sbjct:  162 CLQWVDKDGARDPQCLPMGGQSSWGVLDGPYSSSDSAPSGGKPVVLLSAAMDSVSFFHNTVP 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16990.3914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FSD7_ECTSI4.380e-1864.29Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A7S4DDP0_HETAK2.130e-1258.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V4V2_9STRA4.860e-1152.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
G4ZR63_PHYSP4.870e-1158.93Nicastrin n=1 Tax=Phytophthora sojae (strain P6497... [more]
A0A6A3S396_9STRA6.660e-1158.93Nicastrin n=3 Tax=Phytophthora TaxID=4783 RepID=A0... [more]
H3GV47_PHYRM1.240e-1057.14Nicastrin n=1 Tax=Phytophthora ramorum TaxID=16432... [more]
V9FWN4_PHYPR3.180e-1057.14Nicastrin n=11 Tax=Phytophthora TaxID=4783 RepID=V... [more]
A0A225VLQ2_9STRA5.940e-1053.57Nicastrin n=1 Tax=Phytophthora megakarya TaxID=479... [more]
M4BVK0_HYAAE2.830e-955.36Nicastrin n=1 Tax=Hyaloperonospora arabidopsidis (... [more]
A0A835YYT6_9STRA1.070e-643.55Nicastrin n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16990contigH-paniculata_contig16990:197..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue3e-15
Seed eggNOG ortholog2880.D7FSD7
Preferred nameNCSTN
KEGG koko:K06171
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001775,GO:0002252,GO:0002262,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005886,GO:0005887,GO:0006508,GO:0006509,GO:0006518,GO:0006807,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006955,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007220,GO:0007267,GO:0007275,GO:0007389,GO:0007399,GO:0007423,GO:0007610,GO:0008150,GO:0008152,GO:0008233,GO:0008283,GO:0008594,GO:0009653,GO:0009790,GO:0009887,GO:0009987,GO:0010467,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016485,GO:0016787,GO:0018991,GO:0019098,GO:0019538,GO:0022008,GO:0022414,GO:0022603,GO:0023052,GO:0030141,GO:0030154,GO:0030182,GO:0030587,GO:0030659,GO:0030667,GO:0031090,GO:0031154,GO:0031224,GO:0031226,GO:0031293,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032943,GO:0032989,GO:0032991,GO:0033619,GO:0034205,GO:0034641,GO:0035295,GO:0035333,GO:0035577,GO:0036230,GO:0042051,GO:0042098,GO:0042110,GO:0042119,GO:0042461,GO:0042462,GO:0042478,GO:0042582,GO:0042592,GO:0042982,GO:0042987,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043603,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044671,GO:0045055,GO:0045165,GO:0045168,GO:0045314,GO:0045321,GO:0045463,GO:0045465,GO:0045595,GO:0045664,GO:0046331,GO:0046530,GO:0046532,GO:0046649,GO:0046651,GO:0046903,GO:0048468,GO:0048513,GO:0048565,GO:0048592,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048837,GO:0048856,GO:0048869,GO:0048872,GO:0050435,GO:0050673,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051604,GO:0051703,GO:0051704,GO:0051716,GO:0051960,GO:0055037,GO:0055123,GO:0060284,GO:0060465,GO:0060581,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070661,GO:0070765,GO:0071704,GO:0071840,GO:0071944,GO:0090596,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099503,GO:0140096,GO:1901564,GO:2000026,GO:2000027
EggNOG free text desc.Notch signaling pathway
EggNOG OGsKOG2657@1,KOG2657@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size170
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.768305-CDS-H-paniculata_contig16990:196..3641622929343.768305-CDS-H-paniculata_contig16990:196..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16990 197..364 +
1691480823.1730502-CDS-H-paniculata_contig16990:196..3641691480823.1730502-CDS-H-paniculata_contig16990:196..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16990 197..364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16990.3914.1prot_H-paniculata_contig16990.3914.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16990 197..364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16990.3914.1

>prot_H-paniculata_contig16990.3914.1 ID=prot_H-paniculata_contig16990.3914.1|Name=mRNA_H-paniculata_contig16990.3914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
CLGWTNVKGERAPQCMPLGGQSSWASLGPPGDGRKEAVFALAGMDATSPF
HDLAPG
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mRNA from alignment at H-paniculata_contig16990:197..366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16990.3914.1 ID=mRNA_H-paniculata_contig16990.3914.1|Name=mRNA_H-paniculata_contig16990.3914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=170bp|location=Sequence derived from alignment at H-paniculata_contig16990:197..366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTTAGGTTGGACCAATGTGAAAGGCGAGCGCGCCCCTCAGTGCATGCC
TCTGGGAGGGCAGAGCTCCTGGGCTTCCTTGGGCCCACCTGGCGACGGGA
GGAAAGAGGCGGTGTTCGCTTTGGCTGGCATGGATGCCACCTCGCCTTTT
CACGACCTGGCTCCCGGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16990:197..366+

>mRNA_H-paniculata_contig16990.3914.1 ID=mRNA_H-paniculata_contig16990.3914.1|Name=mRNA_H-paniculata_contig16990.3914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig16990:197..366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTTAGGTTGGACCAATGTGAAAGGCGAGCGCGCCCCTCAGTGCATGCC
TCTGGGAGGGCAGAGCTCCTGGGCTTCCTTGGGCCCACCTGGCGACGGGA
GGAAAGAGGCGGTGTTCGCTTTGGCTGGCATGGATGCCACCTCGCCTTTT
CACGACCTGGCTCCCGGCTGCTTAGGTTGGACCAATGTGAAAGGCGAGCG
CGCCCCTCAGTGCATGCCTCTGGGAGGGCAGAGCTCCTGGGCTTCCTTGG
GCCCACCTGGCGACGGGAGGAAAGAGGCGGTGTTCGCTTTGGCTGGCATG
GATGCCACCTCGCCTTTTCACGACCTGGCTCCCGGC
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