mRNA_H-paniculata_contig16988.3911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16988.3911.1
Unique NamemRNA_H-paniculata_contig16988.3911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16988.3911.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.560e-9
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 IRCAECINQPHGVDLCVECFAEGKEPMEHKKTHKYRVMDKLSEKVFT 141
            IRCAEC +    VDLCV CF  G EP +HKKTH YRVMDKL + +++
Sbjct:   26 IRCAECKDV---VDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYS 69
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BLAST of mRNA_H-paniculata_contig16988.3911.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.660e-9
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 IRCAECINQPHGVDLCVECFAEGKEPMEHKKTHKYRVMDKLSEKVFT 141
            IRC EC  +   VDLC  CF  G EP+ HKKTH YRVMDKL + +FT
Sbjct:   63 IRCEECKQE---VDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFT 106
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BLAST of mRNA_H-paniculata_contig16988.3911.1 vs. uniprot
Match: A0A0L0F9W4_9EUKA (ZZ-type domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0F9W4_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 3.830e-6
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 IRCAECINQPHGVDLCVECFAEGKEPMEHKKTHKYRVMD 117
            IRC EC + P    +C++CFA G+EP  HK+TH YRV+D
Sbjct:   87 IRCVECTDVP----ICMKCFASGREPATHKRTHSYRVID 121
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BLAST of mRNA_H-paniculata_contig16988.3911.1 vs. uniprot
Match: A0A4V1IXD9_9FUNG (Transcriptional adapter 2 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IXD9_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 4.770e-6
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 IRCAECINQPHGVDLCVECFAEGKEPMEHKKTHKYRVMDKLS 126
            I+C  C +    V+LCVECFA+GKEP  H+  H YRVMD+L+
Sbjct:   23 IKCGVCSD----VELCVECFAQGKEPSTHRAGHSYRVMDRLT 60
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BLAST of mRNA_H-paniculata_contig16988.3911.1 vs. uniprot
Match: A0A165A6L2_9AGAM (Transcriptional adapter 2 n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A165A6L2_9AGAM)

HSP 1 Score: 50.1 bits (118), Expect = 8.950e-6
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 IRCAE--CINQPHGVDLCVECFAEGKEPMEHKKTHKYRVMDKLSEKVFT 141
            I+CAE  C   P GVDLC  CF  GKE   HK+TH YRV++  SE +F+
Sbjct:   42 IKCAEPEC-GPPEGVDLCPNCFCNGKEFNNHKRTHPYRVVEVHSEPIFS 89
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BLAST of mRNA_H-paniculata_contig16988.3911.1 vs. uniprot
Match: A0A4D8XTF3_9ALVE (Uncharacterized protein n=1 Tax=Perkinsus sp. BL_2016 TaxID=2494336 RepID=A0A4D8XTF3_9ALVE)

HSP 1 Score: 48.9 bits (115), Expect = 2.290e-5
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 IRCAECINQPHGVDLCVECFAEGKEPMEHKKTHKYRVMDKL 123
            IRCAEC       DLC++CF+ G E   HK+TH YRVM+KL
Sbjct:   58 IRCAEC----QEFDLCLDCFSVGAEISSHKRTHSYRVMEKL 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16988.3911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRV7_ECTSI3.560e-959.57Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JL08_9PHAE6.660e-959.57Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0L0F9W4_9EUKA3.830e-653.85ZZ-type domain-containing protein (Fragment) n=1 T... [more]
A0A4V1IXD9_9FUNG4.770e-654.76Transcriptional adapter 2 n=1 Tax=Thamnocephalis s... [more]
A0A165A6L2_9AGAM8.950e-653.06Transcriptional adapter 2 n=2 Tax=Sistotremastrum ... [more]
A0A4D8XTF3_9ALVE2.290e-556.10Uncharacterized protein n=1 Tax=Perkinsus sp. BL_2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16988contigH-paniculata_contig16988:5130..5270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue8.6e-08
Seed eggNOG ortholog2880.D7FRV7
Preferred nameTADA2A
KEGG rclassRC00505,RC00738,RC02795
KEGG koko:K00457,ko:K03012,ko:K10391,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443,R01372,R02521
KEGG Pathwayko00130,ko00230,ko00240,ko00350,ko00360,ko01100,ko03020,ko05016,ko05169,map00130,map00230,map00240,map00350,map00360,map01100,map03020,map05016,map05169
KEGG ModuleM00044,M00180
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000125,GO:0000183,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000981,GO:0001786,GO:0001932,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0006996,GO:0007049,GO:0007155,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009266,GO:0009299,GO:0009405,GO:0009409,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009733,GO:0009735,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010520,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010810,GO:0010811,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022610,GO:0030155,GO:0030447,GO:0031056,GO:0031058,GO:0031063,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031505,GO:0031589,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035065,GO:0035066,GO:0035327,GO:0035690,GO:0036211,GO:0040007,GO:0040020,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042493,GO:0042710,GO:0042789,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043708,GO:0043709,GO:0043900,GO:0043902,GO:0043966,GO:0043967,GO:0044010,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0045229,GO:0045785,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0060631,GO:0065007,GO:0065008,GO:0070013,GO:0070461,GO:0070887,GO:0071214,GO:0071470,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0072341,GO:0072686,GO:0080090,GO:0090043,GO:0090304,GO:0090311,GO:0090605,GO:0090609,GO:0097159,GO:0097659,GO:0104004,GO:0140110,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1905368,GO:1990234,GO:1990414,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2000758,GO:2001141,GO:2001252
EggNOG free text desc.positive regulation of histone acetylation
EggNOG OGsCOG5114@1,KOG0457@2759
EC1.13.11.27
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400,ko04147,ko04812
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.4710968-CDS-H-paniculata_contig16988:5129..52701622929343.4710968-CDS-H-paniculata_contig16988:5129..5270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16988 5130..5270 +
1691480822.9949868-CDS-H-paniculata_contig16988:5129..52701691480822.9949868-CDS-H-paniculata_contig16988:5129..5270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16988 5130..5270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16988.3911.1prot_H-paniculata_contig16988.3911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16988 5130..5270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16988.3911.1

>prot_H-paniculata_contig16988.3911.1 ID=prot_H-paniculata_contig16988.3911.1|Name=mRNA_H-paniculata_contig16988.3911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
IRCAECINQPHGVDLCVECFAEGKEPMEHKKTHKYRVMDKLSEKVFT
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mRNA from alignment at H-paniculata_contig16988:5130..5270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16988.3911.1 ID=mRNA_H-paniculata_contig16988.3911.1|Name=mRNA_H-paniculata_contig16988.3911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig16988:5130..5270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGCTGCGCCGAGTGCATCAACCAGCCTCACGGCGTTGACCTTTGTGT
GGAGTGCTTCGCCGAGGGGAAGGAGCCGATGGAACATAAGAAGACGCACA
AATATAGGGTTATGGACAAGCTCTCAGAGAAAGTGTTTACT
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Coding sequence (CDS) from alignment at H-paniculata_contig16988:5130..5270+

>mRNA_H-paniculata_contig16988.3911.1 ID=mRNA_H-paniculata_contig16988.3911.1|Name=mRNA_H-paniculata_contig16988.3911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig16988:5130..5270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGCTGCGCCGAGTGCATCAACCAGCCTCACGGCGTTGACCTTTGTGT
GGAGTGCTTCGCCGAGGGGAAGGAGCCGATGGAACATAAGAAGACGCACA
AATATAGGGTTATGGACAAGCTCTCAGAGAAAGTGTTTACTATCCGCTGC
GCCGAGTGCATCAACCAGCCTCACGGCGTTGACCTTTGTGTGGAGTGCTT
CGCCGAGGGGAAGGAGCCGATGGAACATAAGAAGACGCACAAATATAGGG
TTATGGACAAGCTCTCAGAGAAAGTGTTTACT
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