mRNA_H-paniculata_contig16986.3909.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16986.3909.1
Unique NamemRNA_H-paniculata_contig16986.3909.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16986.3909.1 vs. uniprot
Match: D8LAY6_ECTSI (Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.590e-19
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    7 LKHILWKVESMGISLAEAFGVFDNDGSGFITVRELEEGLRTLGVFEAIPKEQVCALLRKLKKSHGSTVTEN 219
            LK+I+ K ESMG SLAE FGVFD DGSGFIT  ELEEGLR L VF+A+P++QV +L RKLK S   +  +N
Sbjct: 1501 LKNIVMKAESMGTSLAEVFGVFDKDGSGFITAAELEEGLRELRVFDAVPRDQVISLARKLKSSSSFSGRDN 1571
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BLAST of mRNA_H-paniculata_contig16986.3909.1 vs. uniprot
Match: A0A6H5JNY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 6.460e-19
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    4 KLKHILWKVESMGISLAEAFGVFDNDGSGFITVRELEEGLRTLGVFEAIPKEQVCALLRKLKKSHGSTVTEN 219
            KLK+I+ K ESMG SLAE FGVFD DGSGFIT  ELEEGLR L VF+ +P++QV +  RKLK S   +  +N
Sbjct:  274 KLKNIVMKAESMGTSLAEVFGVFDKDGSGFITAAELEEGLRELRVFDTVPRDQVISFARKLKSSSSFSGRDN 345
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BLAST of mRNA_H-paniculata_contig16986.3909.1 vs. uniprot
Match: A0A835YU49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU49_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.740e-10
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   31 ESMGISLAEAFGVFDNDGSGFITVRELEEGLRTLGVFEAIPKEQVCALLRK 183
            ESMG S+AEAF  FD +G G IT  ELEEGLR LGVF A+P ++V  LL++
Sbjct: 2015 ESMGTSIAEAFTAFDKNGDGAITPSELEEGLRALGVFSAVPPKEVTHLLQR 2065
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16986.3909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LAY6_ECTSI2.590e-1963.38Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JNY0_9PHAE6.460e-1961.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YU49_9STRA5.740e-1060.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16986contigH-paniculata_contig16986:2031..3595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue3.7e-16
Seed eggNOG ortholog2880.D8LAY6
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005432,GO:0005488,GO:0005509,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006816,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons2
Model size235
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.4113054-CDS-H-paniculata_contig16986:2032..21011622929343.4113054-CDS-H-paniculata_contig16986:2032..2101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16986 2033..2101 -
1691480822.973123-CDS-H-paniculata_contig16986:2032..21011691480822.973123-CDS-H-paniculata_contig16986:2032..2101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16986 2033..2101 -
1622929343.4263296-CDS-H-paniculata_contig16986:3433..35951622929343.4263296-CDS-H-paniculata_contig16986:3433..3595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16986 3434..3595 -
1691480822.9842627-CDS-H-paniculata_contig16986:3433..35951691480822.9842627-CDS-H-paniculata_contig16986:3433..3595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16986 3434..3595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16986.3909.1prot_H-paniculata_contig16986.3909.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16986 2033..3595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16986.3909.1

>prot_H-paniculata_contig16986.3909.1 ID=prot_H-paniculata_contig16986.3909.1|Name=mRNA_H-paniculata_contig16986.3909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
FKLKHILWKVESMGISLAEAFGVFDNDGSGFITVRELEEGLRTLGVFEAI
PKEQVCALLRKLKKSHGSTVTENACTK
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mRNA from alignment at H-paniculata_contig16986:2031..3595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16986.3909.1 ID=mRNA_H-paniculata_contig16986.3909.1|Name=mRNA_H-paniculata_contig16986.3909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1565bp|location=Sequence derived from alignment at H-paniculata_contig16986:2031..3595- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAAGCTTAAACATATTCTGTGGAAAGTGGAGAGCATGGGCATCTCTCT
CGCAGAAGCATTTGGAGTATTCGATAACGATGGCTCGGGATTCATCACTG
TTAGGGAGCTCGAGGAGGGGCTGCGGACACTCGGCGTTTTTGAAGCCATT
CCTAAGGAGCAGGTACGGAAGATTCTGCACATGTATAAAGCTTCCACACC
TCGAATGAAGGAGCGGCAGACCAGCTCTGTGTTCATCCTCGAATCAGATT
TCATAATTAGTCACCTTTATCACCTTAATCGCCTTTCTTCGGTTCGCAAC
TAGCTGCCTTCATCACCTTCATCGACTTTTTATTTTCTCAATTAGCTGCC
TTTCTTACCTTCATCGATTTTTCACTTGTGCAATTAGTTGCCTCCATCAC
CTTCATTGCGTTGCCGATGAAGTTTAATGAAGGCAGCACACCCATCGAAC
CGCTCCTTCATCGTAAGTGTGAACGGTCAATACATGCCTTCTCTGTTCCA
CAAACTGGAAAAACTAGTTACTGACTAAACGTTCTCTTTTACTTCAACTT
ATAGTATATGAAAATTCACACGTATCCATGCAATTATATGCAGATCTCGG
TTTGTTTAGTGATTGAAATATGCTTTAGGAAAGGAAGAGTCGAATAAAAG
TGCTACATTCATGCGCCTTCATCAAACTTTTGGAAATCATAATTAGCTGC
CTTCATCACCTTCACCGATTTTTTGGAATAGTAAATAGCTGACCTTCAAA
CCTTCATCGATTTTTTACTTGCGCAATTAGCTGCCTTCATTACCCTTATC
GGGTTTCTACTTTCGCAAATAGCTGACCTTCCAATTTTACACCCCGCGGA
CTAATTCGAATGAAGCATTCGCAACTATATCGAACTGTCATTATATTTTT
TGGGTTAATACGTATTTATTCATTTATAGGTCTATGAATGGTCACTCTAT
AGATGGTCATAAGGTGGTCATATACCCGGCGAACAGTCACACGTGAAGGT
CCTGTTTATTTTCCGTATGGTACTGTACATATCGAATACTCTCATCCGCC
CGAGATTTTTGATGTCCCGTGGCATATCGAGTACACCGTATATTATTCGT
GTAATATGGACATCTTCCCCAACTCAAACAGATACAGTATTCATTCCAGA
TTTTCCGTATTTATTCGTGTCTTGTATTCGTATGTGTCCGGGGGGTGATA
CCTTGATACTCAAATCACATTCCGTAATTAGCTGACCTTCAGACATTCAT
CGCAGTTGGAATGAAATTTAAAAAAATGGCACCTTCATCGGACATGCTCC
TTCATCCGACGTGTGAAAGCTTCAAAAGGAGAGTGCTGTATATACATTCG
GGTGGAAGATAGCCACTAGTAGACATCGTTTGGAAGGGTGCTAATATGTA
GACACGATGCCTGCTGCTGCGAATGGTCGGCATCACAACGTCCGTCCGAT
GCTCGGCATTCCCCGATCATTCTCTGTTTTCCTTATCTTTCAAGGTTTGC
GCACTCTTGCGTAAACTAAAGAAGAGCCACGGTTCAACGGTCACAGAAAA
TGCCTGTACTAAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig16986:2031..3595-

>mRNA_H-paniculata_contig16986.3909.1 ID=mRNA_H-paniculata_contig16986.3909.1|Name=mRNA_H-paniculata_contig16986.3909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig16986:2031..3595- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAAGCTTAAACATATTCTGTGGAAAGTGGAGAGCATGGGCATCTCTCT
CGCAGAAGCATTTGGAGTATTCGATAACGATGGCTCGGGATTCATCACTG
TTAGGGAGCTCGAGGAGGGGCTGCGGACACTCGGCGTTTTTGAAGCCATT
CCTAAGGAGCAGTTCAAGCTTAAACATATTCTGTGGAAAGTGGAGAGCAT
GGGCATCTCTCTCGCAGAAGCATTTGGAGTATTCGATAACGATGGCTCGG
GATTCATCACTGTTAGGGAGCTCGAGGAGGGGCTGCGGACACTCGGCGTT
TTTGAAGCCATTCCTAAGGAGCAGGTTTGCGCACTCTTGCGTAAACTAAA
GAAGAGCCACGGTTCAACGGTCACAGAAAATGCCTGTACTAAAGTTTGCG
CACTCTTGCGTAAACTAAAGAAGAGCCACGGTTCAACGGTCACAGAAAAT
GCCTGTACTAAA
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