mRNA_H-paniculata_contig16986.3910.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16986.3910.1
Unique NamemRNA_H-paniculata_contig16986.3910.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16986.3910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16986contigH-paniculata_contig16986:4190..4623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size331
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.3518112-CDS-H-paniculata_contig16986:4190..44571622929343.3518112-CDS-H-paniculata_contig16986:4190..4457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16986 4191..4457 -
1691480822.9566479-CDS-H-paniculata_contig16986:4190..44571691480822.9566479-CDS-H-paniculata_contig16986:4190..4457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16986 4191..4457 -
1622929343.3702347-CDS-H-paniculata_contig16986:4560..46231622929343.3702347-CDS-H-paniculata_contig16986:4560..4623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16986 4561..4623 -
1691480822.9646955-CDS-H-paniculata_contig16986:4560..46231691480822.9646955-CDS-H-paniculata_contig16986:4560..4623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16986 4561..4623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16986.3910.1prot_H-paniculata_contig16986.3910.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16986 4191..4623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16986.3910.1

>prot_H-paniculata_contig16986.3910.1 ID=prot_H-paniculata_contig16986.3910.1|Name=mRNA_H-paniculata_contig16986.3910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
GRHTFLDAVFVEGQGLTDSLQVLPNLRLTAREKTVLCRRLEAPNGDRINI
AAALRFFGCPMNSALTGSHIPQHTEDVHLDKTQEAAADGEEEDPTAGAEV
RYWLVVTNQR
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mRNA from alignment at H-paniculata_contig16986:4190..4623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16986.3910.1 ID=mRNA_H-paniculata_contig16986.3910.1|Name=mRNA_H-paniculata_contig16986.3910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=434bp|location=Sequence derived from alignment at H-paniculata_contig16986:4190..4623- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGCATACCTTCCTGGACGCGGTATTTGTTGAAGGTCAAGGCCTTAC
CGACTCTCTTCAGGTTGGTGGTGCTGTTAGCGATTTGGCAATGCCGAATA
TTCGGATTAGAACATGTGCTAAGATTCGAAAGTACCTGCCCCTCCCCGCT
TTATGATTACAAACAGGTGCTACCCAACCTGAGGCTGACCGCACGGGAGA
AAACTGTTTTATGCAGGCGGCTTGAGGCACCCAATGGCGACAGGATAAAC
ATCGCCGCTGCGCTGCGCTTCTTCGGCTGCCCCATGAACAGCGCACTCAC
TGGCTCGCATATTCCTCAGCACACGGAGGACGTCCATTTGGACAAAACGC
AGGAAGCTGCAGCCGACGGGGAAGAGGAAGATCCCACGGCCGGTGCTGAG
GTGAGATATTGGTTAGTAGTCACGAACCAGCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16986:4190..4623-

>mRNA_H-paniculata_contig16986.3910.1 ID=mRNA_H-paniculata_contig16986.3910.1|Name=mRNA_H-paniculata_contig16986.3910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig16986:4190..4623- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGCATACCTTCCTGGACGCGGTATTTGTTGAAGGTCAAGGCCTTAC
CGACTCTCTTCAGGGGCGGCATACCTTCCTGGACGCGGTATTTGTTGAAG
GTCAAGGCCTTACCGACTCTCTTCAGGTGCTACCCAACCTGAGGCTGACC
GCACGGGAGAAAACTGTTTTATGCAGGCGGCTTGAGGCACCCAATGGCGA
CAGGATAAACATCGCCGCTGCGCTGCGCTTCTTCGGCTGCCCCATGAACA
GCGCACTCACTGGCTCGCATATTCCTCAGCACACGGAGGACGTCCATTTG
GACAAAACGCAGGAAGCTGCAGCCGACGGGGAAGAGGAAGATCCCACGGC
CGGTGCTGAGGTGAGATATTGGTTAGTAGTCACGAACCAGCGGGTGCTAC
CCAACCTGAGGCTGACCGCACGGGAGAAAACTGTTTTATGCAGGCGGCTT
GAGGCACCCAATGGCGACAGGATAAACATCGCCGCTGCGCTGCGCTTCTT
CGGCTGCCCCATGAACAGCGCACTCACTGGCTCGCATATTCCTCAGCACA
CGGAGGACGTCCATTTGGACAAAACGCAGGAAGCTGCAGCCGACGGGGAA
GAGGAAGATCCCACGGCCGGTGCTGAGGTGAGATATTGGTTAGTAGTCAC
GAACCAGCGG
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