mRNA_H-paniculata_contig1698.3907.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1698.3907.1
Unique NamemRNA_H-paniculata_contig1698.3907.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: A0A6H5L594_9PHAE (Ribosomal_L23eN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L594_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 7.660e-46
Identity = 82/90 (91.11%), Postives = 88/90 (97.78%), Query Frame = 2 
Query:  725 QAPKMTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            ++P+M KHRI+KFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIE QNVNTLIRPDGKKKAYVRLTQ+FDALE+ANKIGII
Sbjct:   55 RSPQMNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEVANKIGII 144
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: A0A835Z6Z2_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z2_9STRA)

HSP 1 Score: 150 bits (378), Expect = 6.260e-40
Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:  731 PKMTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            PKM K RI+K+PLTTESAMKKIEDNNTLVFIVDVK+NKRQIK AV+ALY+I CQ VNTLIRPDG KKAYVRLTQ++DALE+ANKIGII
Sbjct:   61 PKMDKFRIIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKAAVRALYEISCQKVNTLIRPDGLKKAYVRLTQDYDALEVANKIGII 148
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: A0A7S2STG4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STG4_9STRA)

HSP 1 Score: 147 bits (371), Expect = 8.370e-39
Identity = 70/87 (80.46%), Postives = 82/87 (94.25%), Query Frame = 2 
Query:  734 KMTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            KM KHRI+K+PLTTESAMKKIEDNNTLVFIVDV +NKRQIKDAV  ++DI+CQ VNTLIRPDG+KKAYVRLTQ++DAL++AN+IGII
Sbjct:   70 KMDKHRIIKYPLTTESAMKKIEDNNTLVFIVDVTANKRQIKDAVSQMHDIQCQKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 156
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: A0A6U1J6R7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1J6R7_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.400e-38
Identity = 69/87 (79.31%), Postives = 82/87 (94.25%), Query Frame = 2 
Query:  734 KMTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            KM K+R++K+PLTTESAMKKIEDNNTLVFIVDV +NKRQIKDAVKA+Y+I C  VNTLIRPDG+KKAYVRLTQ++DAL++AN+IGII
Sbjct:   54 KMDKYRVIKYPLTTESAMKKIEDNNTLVFIVDVAANKRQIKDAVKAMYEISCSKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 140
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: F0YN25_AURAN (60S ribosomal protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN25_AURAN)

HSP 1 Score: 141 bits (355), Expect = 2.100e-37
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 2 
Query:  737 MTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            M K+R++K+PLTTESAMKKIEDNNTLVFIVDV +NKRQIKDAVK +Y+I C  VNTLIRPDG+KKAYVRLTQ++DAL++AN+IGII
Sbjct:    1 MDKYRVIKYPLTTESAMKKIEDNNTLVFIVDVLANKRQIKDAVKQMYEIACAKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 86
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: A0A7S4QLV7_9DINO (Hypothetical protein n=3 Tax=Sar TaxID=2698737 RepID=A0A7S4QLV7_9DINO)

HSP 1 Score: 140 bits (354), Expect = 1.990e-36
Identity = 68/91 (74.73%), Postives = 82/91 (90.11%), Query Frame = 2 
Query:  725 QAPK-MTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            Q PK M K+R +K+PLTTESAMKKIEDNNTLVFIVD+ +NKRQIK+AV+ LY+I+C  VNTL+RPDG KKAYVRLTQ+FDAL++AN+IGII
Sbjct:   59 QGPKKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDISANKRQIKEAVRQLYEIQCAKVNTLVRPDGLKKAYVRLTQDFDALDVANRIGII 149
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: A0A7S0YJH4_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YJH4_9CRYP)

HSP 1 Score: 139 bits (351), Expect = 5.930e-36
Identity = 68/87 (78.16%), Postives = 78/87 (89.66%), Query Frame = 2 
Query:  734 KMTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            KM + +I+K+PLTTESAMKKIEDNNTLVFIVDV+SNKRQI  AVK +YDI C  VNTL+RPDG KKAYVRLTQ+FDAL++ANKIGII
Sbjct:   66 KMDQFQIIKYPLTTESAMKKIEDNNTLVFIVDVRSNKRQISQAVKKMYDIVCARVNTLVRPDGVKKAYVRLTQDFDALDVANKIGII 152
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: L1IGD0_GUITC (Large subunit ribosomal protein L23Ae, cytoplasmic n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IGD0_GUITC)

HSP 1 Score: 138 bits (347), Expect = 2.180e-35
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 2 
Query:  725 QAPKMTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            +A K+ + +I+K+PLTTESAMKKIEDNNTLVFI DV++NKRQI  AVK +YDI C  VNTL+RPDG KKAYVRLTQ+FDAL++ANKIGII
Sbjct:   62 KANKLDQFQIIKYPLTTESAMKKIEDNNTLVFITDVRANKRQISQAVKKMYDISCSKVNTLVRPDGVKKAYVRLTQDFDALDVANKIGII 151
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: A0A3F2RWD3_9STRA (Ribosomal_L23eN domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWD3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.880e-35
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 2 
Query:  734 KMTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            KM K+RI+K PLTTESAMKKIEDNNTLVF+VD+ SNKRQIKDAVK LYDI+   VNTLIRPDG+KKAYVRLT ++DAL++AN+IG+I
Sbjct:   62 KMDKYRIIKSPLTTESAMKKIEDNNTLVFLVDLLSNKRQIKDAVKQLYDIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 148
[Close]
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Match: A0A7S2DT56_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DT56_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.120e-35
Identity = 66/86 (76.74%), Postives = 79/86 (91.86%), Query Frame = 2 
Query:  737 MTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIECQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII 994
            + K+ I+K PLTTESAMKKIEDNNTLVFIVDVK+NKRQIK AV  ++DI+CQ VNTLIRPDG+KKAYVRLTQ++DAL++AN+IGII
Sbjct:   65 LDKYHIIKCPLTTESAMKKIEDNNTLVFIVDVKANKRQIKQAVTNMHDIQCQKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1698.3907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L594_9PHAE7.660e-4691.11Ribosomal_L23eN domain-containing protein n=2 Tax=... [more]
A0A835Z6Z2_9STRA6.260e-4084.09Ribosomal protein L23/L15e core domain-containing ... [more]
A0A7S2STG4_9STRA8.370e-3980.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U1J6R7_9STRA1.400e-3879.31Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YN25_AURAN2.100e-3777.9160S ribosomal protein n=1 Tax=Aureococcus anophage... [more]
A0A7S4QLV7_9DINO1.990e-3674.73Hypothetical protein n=3 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S0YJH4_9CRYP5.930e-3678.16Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
L1IGD0_GUITC2.180e-3573.33Large subunit ribosomal protein L23Ae, cytoplasmic... [more]
A0A3F2RWD3_9STRA3.880e-3577.01Ribosomal_L23eN domain-containing protein n=2 Tax=... [more]
A0A7S2DT56_9STRA4.120e-3576.74Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1698contigH-paniculata_contig1698:16242..19271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue8.6e-38
Seed eggNOG ortholog2880.D7FP15
Preferred nameRPL23A
KEGG koko:K02893,ko:K07921,ko:K19931
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070180,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0089@1,KOG1751@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04031,ko04131
Exons3
Model size1402
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1698.3907.1prot_H-paniculata_contig1698.3907.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1698 17878..18866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.1081123-UTR-H-paniculata_contig1698:16241..168831622929343.1081123-UTR-H-paniculata_contig1698:16241..16883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1698 16242..16883 +
1691480822.8595326-UTR-H-paniculata_contig1698:16241..168831691480822.8595326-UTR-H-paniculata_contig1698:16241..16883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1698 16242..16883 +
1622929343.1240478-UTR-H-paniculata_contig1698:17783..178771622929343.1240478-UTR-H-paniculata_contig1698:17783..17877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1698 17784..17877 +
1691480822.8696232-UTR-H-paniculata_contig1698:17783..178771691480822.8696232-UTR-H-paniculata_contig1698:17783..17877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1698 17784..17877 +
1622929343.1735468-UTR-H-paniculata_contig1698:18866..192711622929343.1735468-UTR-H-paniculata_contig1698:18866..19271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1698 18867..19271 +
1691480822.892069-UTR-H-paniculata_contig1698:18866..192711691480822.892069-UTR-H-paniculata_contig1698:18866..19271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1698 18867..19271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.1385078-CDS-H-paniculata_contig1698:17877..180531622929343.1385078-CDS-H-paniculata_contig1698:17877..18053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1698 17878..18053 +
1691480822.8766577-CDS-H-paniculata_contig1698:17877..180531691480822.8766577-CDS-H-paniculata_contig1698:17877..18053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1698 17878..18053 +
1622929343.154413-CDS-H-paniculata_contig1698:18781..188661622929343.154413-CDS-H-paniculata_contig1698:18781..18866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1698 18782..18866 +
1691480822.8837228-CDS-H-paniculata_contig1698:18781..188661691480822.8837228-CDS-H-paniculata_contig1698:18781..18866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1698 18782..18866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1698.3907.1

>prot_H-paniculata_contig1698.3907.1 ID=prot_H-paniculata_contig1698.3907.1|Name=mRNA_H-paniculata_contig1698.3907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MTKHRIVKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIE
CQNVNTLIRPDGKKKAYVRLTQNFDALEIANKIGII*
back to top

mRNA from alignment at H-paniculata_contig1698:16242..19271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1698.3907.1 ID=mRNA_H-paniculata_contig1698.3907.1|Name=mRNA_H-paniculata_contig1698.3907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3030bp|location=Sequence derived from alignment at H-paniculata_contig1698:16242..19271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCTTCAAACGGTGGTTCACCCCTGTCGGTCAACCTCCCTCGTGCCAC
GGAAAATCTTGCCCTTCTTCCCACCGCGGTTGATGCTTGAGATCATGGCA
AGTGCTTTGATGAAAATGCGAAAATTTGTTCAAAATATATTCGCGGATAC
GAAGTAGATCTTAACTAGTGCCCGAGTCCGACGATTGGAGGTGGTTGGCT
GGGTTCTCGGGTGGAAAGAGGCTAGGTCAGGGTTGCTACATCCCCCGAAC
CTCCTAGTACACATTTGCTGCTGTGGAGTAATGTGAACGTGCTTTTGGTC
CTCGGGTCTTTGTCATGGAACTCGGTAGGTCACGAACTGTTTCTCGAAAA
ATGAATATCCAATCCATCAACTTGAATCGGACGCACAACACTTACCGAGT
CTGTTCTCCGTACCTTTGCCCAACAACACATGGTTGAAATTCTTTGTTAT
TTACGTTGGCGGTTACTCGCTCCAATCAATGGTACACTTGGTGAACTTCG
GGATACTGCTTGGGGCGGTTATATTGCTGGAAAATGCTACATCGTCTGGA
TTTTGATATTGGCCGTGGCGTCAACACGAAATAGGCCGAAGACTCTCAAG
CTTGCGCGTAACCCGAAGTACCCCACGACAGCCGTCCCCCGGGTGAGCTT
TCCTGGCGTATATTTTAATGAGTAGTAGTGGCAATGATATCAATTTGTTC
ATCAGGAGGTTTGAATCGTGAAGGTTTGATGGAATGAACTAGACGGTTTC
GTCTGGTGTGGGTAAAATAATTTTGGAAAAGCCTATGTTGAAGTTTTTCC
CAGTCTTGGAAGCTTGTATGATATCATCTCGATGCTGGTTTGAAACCTTG
AATTTAGTTCAAAAACTACTATATTATGGGGAGGGATGAGGAATTGATGT
CGGTCACCATGCTCATGTCGATGGGTTCTGATTAGCTGCTCATGGTTATT
CTTGAGTCAAGTGTGCTCGGATGATGGATTTTCAGTACGTAACGGAACAA
TCGTGATCATTCATGTGTCGGATGCTCGTCGCTTCAGTTTATAGCTTGAC
CTTTATTTTATCTCAATCTATGGGACAAAGGATGTGCGCTTTTGCCTCAC
CAGAGGCTGTTTCGATATTTTGTGTTGTGACGGTCGAATACAAGTGGCTG
GTACCTTGAGCTGTGTGAGTACTTCGGGAATTACACACTTGTGTGTGTCG
GAAGATTTCACCACGCCTAGGAATTTGTGCCTGTCTTTTCTCACTAATTA
AGAACAAATCTGTGATGGGTATGGCGTGAATTGGGGCCCCGACGATGCGT
ATTCATCTGTGGGTATATGCGGCACTGTTACTATCGGCAATCGTCATGAT
GTGTCATCTGTTGATCCCCTTACACAACTGGTTTCGGAGATCATCTCCCG
GTGCTCACGTCCTGTACGAATACTGTCTGATTCATGCCTCTTGGTCTGCA
ACGCTCGTGTGATATTGTCGTGACATTCAAGTGTAGTGATCGAATGTCGA
GCATGAAACTCTTTTTCCATACTTCCCAGACATGAAATAAAGCTTTTGGA
TGCCCGATAACCAAAATGTATAGGAGTAGGCTCATCTTGATTTGTTCATT
TCTCTACGTCTCGTCGTCGATACACAGGCACCCAAGATGACCAAGCACCG
AATCGTCAAGTTCCCGTTGACGACTGAGAGCGCCATGAAAAAGATTGAAG
ACAACAACACGCTTGTTTTCATCGTGGACGTGAAGTCTAACAAGAGGCAA
ATCAAGGACGCGGTAAAGGCGTTGTACGACATCGAGTGCCAGAACGTCAA
CACCCTCATCCGGTAAGCTGAAATAGATCGGTGTTTTAGGCCATTTCAAG
GTGATCCCATGACAACAAAATATTCTAATTTTTGTTGAAATAAGTTTTTG
ATGCGTGTATGGAGGATAGTCGTGACGAGAGGAGGTAGTGTGGATGTGGA
CAACAGCTGTATGGGACTCGCACAACAGGTTTCTGGGTCACAAGATAGAT
GAGCTAGGCATCGAGCAGATGCAAATATTTCGCCCCCTGAATAAGTTTGA
CTAAAGGACAATGATGAATATGACAAACTTTGAATAACAAGTGTACTTGG
GTGACGAATATAGTGTCCTCGATACGCCGTTGACCGTCGAAAAACTCGGG
CCGATGGAATATTTGGTCCGTACTGTACCATCCGGAAAGTAAATGAAAAC
TAAATCGTAATTAATCGCTGCATATACAGACCTGATGACCATTTGTAGAG
TAACCGTTCATGGACTCATGGATGAATGAGTATACGCAAAACCCGAAACA
AATATTGATAGTTCGAGATGGTCGCGAATACTCAATTCGTACTTATTCGG
GGAGTTGAACGTTAGTCTCCTAGTGATGCTGTATCTTGGTAAGGTTTCAG
TGGGATATGTTGAAAAAATGTTAATATATTCGGATCAGTAAACACGTGGT
GTTCAGGAATGGTATTTTCAAGGTATATGTTGTGCTGATGCATTTGCGCG
CGGACTGTACGTATCCTTCGTTTATGACCATCTTTGGCAGGCCGGATGGG
AAGAAGAAGGCTTACGTGCGCCTCACGCAAAACTTTGACGCACTCGAGAT
CGCCAACAAGATCGGCATCATCTAAAGAGTCATGCTTTCGATTTTTTGAA
ATCTCTGTTGTAATGTTTCGAAAACAGAGGGTTTGAGGTAGCTGTTGCCT
TGAGCTACTGTGAAAAGCATGGTTGGGGATAGCGGGGGCACCATGTTTGT
TCATGTCTCTTTGAGGGGGTATATCACCAGATATACCGTTGAAGCATGGG
AAGGACGCTGGTGTGAACATATAATGAAAATTGAGTCACCACTTGATTGT
ATCTGTGTTCTCAACAAAAGAATCGGGGAAACATCAATGACCGGTCGCGT
TCAGTTCGAACCGATCATCCTCAGCCATACCATGTTCTCAGCTAATGTTT
TAAATTAGTAAAATCGATACACGCGTGTGCCCACAACTGTAACGCGGACT
TATTCACACCTCCTGCCACACAATAAATCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1698:16242..19271+

>mRNA_H-paniculata_contig1698.3907.1 ID=mRNA_H-paniculata_contig1698.3907.1|Name=mRNA_H-paniculata_contig1698.3907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig1698:16242..19271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAAGCACCGAATCGTCAAGTTCCCGTTGACGACTGAGAGCGCCAT
GAAAAAGATTGAAGACAACAACACGCTTGTTTTCATCGTGGACGTGAAGT
CTAACAAGAGGCAAATCAAGGACGCGGTAAAGGCGTTGTACGACATCGAG
TGCCAGAACGTCAACACCCTCATCCGATGACCAAGCACCGAATCGTCAAG
TTCCCGTTGACGACTGAGAGCGCCATGAAAAAGATTGAAGACAACAACAC
GCTTGTTTTCATCGTGGACGTGAAGTCTAACAAGAGGCAAATCAAGGACG
CGGTAAAGGCGTTGTACGACATCGAGTGCCAGAACGTCAACACCCTCATC
CGGCCGGATGGGAAGAAGAAGGCTTACGTGCGCCTCACGCAAAACTTTGA
CGCACTCGAGATCGCCAACAAGATCGGCATCATCTAAGCCGGATGGGAAG
AAGAAGGCTTACGTGCGCCTCACGCAAAACTTTGACGCACTCGAGATCGC
CAACAAGATCGGCATCATCTAA
back to top