mRNA_H-paniculata_contig16976.3904.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16976.3904.1
Unique NamemRNA_H-paniculata_contig16976.3904.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 196 bits (497), Expect = 5.310e-52
Identity = 115/361 (31.86%), Postives = 193/361 (53.46%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVLVYVDDLIIAGRR-EKVNEFKHKLSGLFRIEDLGSLSRVLGVRVRRD-----CPDGSYIREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGHGLEGFVDADWAGNVED*KSTTRHVFKLNG 1065
            LP  RKA+  KW+FK K   DG +  +KARLVAQ FSQ  G +  +T +P  R  ++RTV  L+ +   +               ++    + P GF +        +L +SLY  KQS R WN  LD+ L  IG  +  ++P +Y    DG     +V ++VDD+I+AG+  EK+ + K  ++  F+++D+G L  +LG++V ++         +Y   ++K +G + C+ V TP   +  L + + D  + ++        N  E++  V S +Y S+ TRPD+ +AV+  A+   NP+ E ++  + I+RYL    + G  + + +N   + GF DADWAG++ D KST+ + F++NG
Sbjct:  183 LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMED--SELF--------NKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQING 530          
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 199 bits (505), Expect = 1.060e-51
Identity = 119/362 (32.87%), Postives = 195/362 (53.87%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVL-VYVDDLIIAGRR-EKVNEFKHKLSGLFRIEDLGSLSRVLGVRVRRD-----CPDGSYIREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGHGLEGFVDADWAGNVED*KSTTRHVFKLNG 1065
            LP  RKA+  KW+FK K   DG +  +KARLVAQ FSQ  G +  +T +P  R   +RTV  L+ +   +               ++    + P GF +      V +L +SLY  KQS R WN  LD+ L  IG  +  ++P +Y    DG   DI V+ ++VDD+I+AG+  EK+ + K  ++  F+++D+G L  +LG++V ++         +Y   ++K +G + C+ V TP   +  L + + D  + ++        N  EY+  V S +Y S+ TRPD+ +AV+  A+   NP+ E ++  + I+RYL    + G  + + +N   + GF DADWAG++ D KST+ + F++NG
Sbjct:  797 LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIED--SELF--------NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQING 1144          
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 194 bits (494), Expect = 2.330e-51
Identity = 125/363 (34.44%), Postives = 186/363 (51.24%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVLVYVDDLIIAGRRE-KVNEFKHKLSGLFRIEDLGSLSRVLGVRVRRDCPDG--------SYIREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGHGLEGFVDADWAGNVED*KSTTRHVFKLN 1062
            LP  RKA+  KW+F+ K   DG + T+KARLVAQ FSQ  G++  +T +P AR  ++RTV  LAA+H  +               K     +   GF        V RLR+S+Y  KQS R WN  LD  L  +G  + T +P +Y    +GGE   ++ VYVDD+++AG+ + K+NE K  L+  F+++D+G L   LGV+V    PD         +Y + VL+  G +  +   TP      L     D           +  +   Y+  V   +Y ST TRPD+AYAV   AR   +P+ E +   + I RYL+   D+G  +          G+ DADWAG+++D KST+ +VF+++
Sbjct:   19 LPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKEHLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKE-EGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPK-PDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADD----------SQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQIS 368          
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 192 bits (489), Expect = 5.760e-51
Identity = 124/363 (34.16%), Postives = 186/363 (51.24%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVLVYVDDLIIAGRRE-KVNEFKHKLSGLFRIEDLGSLSRVLGVRVRRDCPDG--------SYIREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGHGLEGFVDADWAGNVED*KSTTRHVFKLN 1062
            LP  RKA+  KW+F+ K   DG + T+KARLVAQ FSQ  G++  +T +P AR  ++RTV  LAA+H  +               K     + P GF        V RLR+S+   KQS R WN  LD  L  +G  + T +P +Y    +GGE   ++ VYVDD+++AG+ + K+NE K  L+  F+++D+G     LGV+V +  PD         +Y + VL+  G +  +   TP      L     D           +  +   Y+  V   +Y ST TRPD+AYAV   AR   +P+ E +   + I RYL+   D+G  +          G+ DADWAG+++D KST+ +VF+++
Sbjct:  167 LPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEHLVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKE-EGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQK-PDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADD----------SQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQIS 516          
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 188 bits (478), Expect = 1.410e-50
Identity = 128/362 (35.36%), Postives = 188/362 (51.93%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVLVYVDDLIIAGRREKVN-EFKHKLSGLFRIEDLGSLSRVLGVRVRRDCPDGSY-------IREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGH-GLEGFVDADWAGNVED*KSTTRHVFKL 1059
            LP  ++ I  KW+FK K  + G + TYKARLVA+ FSQ++G +  KT AP  R  T+R +  + A  +               +         P GF        V RLR+SLY  KQS R WN    D L  +G      +P L FSR +   T   VL+YVDDL+IAG   ++  +   +L+  F I+DLG + + LG++V R+  DGS+       +R +LK HG    + V TP         + ++  +   E + K   N+ EYR  + S +Y +T TRPD+++AV Q  R M++P++ D+   + + RYL+  P     F   +NG   L GFVDADWAG+  D KST+ + FK+
Sbjct:   14 LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDKTFAPVVRHETVRILFAVVAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTGGKVLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRSEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVERE-EDGSFLLYQAAKVRHLLKEHGLLDAKPVATP---------MEANFLSSTEEESPKLPDNA-EYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRF--SANGSIKLSGFVDADWAGDQADRKSTSGYAFKV 361          
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: A0A5S6QN85_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QN85_TRIMR)

HSP 1 Score: 188 bits (478), Expect = 1.720e-48
Identity = 128/362 (35.36%), Postives = 189/362 (52.21%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVLVYVDDLIIAGRREKVN-EFKHKLSGLFRIEDLGSLSRVLGVRVRRDCPDGSY-------IREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGH-GLEGFVDADWAGNVED*KSTTRHVFKL 1059
            LP  ++ I  KW+FK K  + G + TYKARLVA+ FSQ++G +  +T AP  R  T+R +  +AA  +               +         P GF        V RLR+SLY  KQS R WN    D L  +G      +P L FSR +   T   VL+YVDDL+IAG   ++  +   +L+  F I+DLG + + LG++V R+  DGS+       +R +LK HG    + V TP         + ++  +   E + K   N+ EYR  + S +Y +T TRPD+++AV Q  R M++P++ D+   + + RYL+  P     F   +NG   L GFVDADWAG+  D KST+ + FK+
Sbjct:  394 LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDETFAPVVRHETVRILFAVAAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTDGKVLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRNEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVERE-EDGSFLLYQAAKVRHLLKEHGLLDAKPVATP---------MEANFLSSTEEESPKLPDNA-EYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRF--SANGSIKLSGFVDADWAGDHADRKSTSGYAFKV 741          
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: Q8MRT6_DROME (SD26211p n=1 Tax=Drosophila melanogaster TaxID=7227 RepID=Q8MRT6_DROME)

HSP 1 Score: 185 bits (470), Expect = 6.280e-48
Identity = 124/363 (34.16%), Postives = 186/363 (51.24%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVLVYVDDLIIAGR-REKVNEFKHKLSGLFRIEDLGSLSRVLGVRVRRDCPDGS-------YIREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGHGLEGFVDADWAGNVED*KSTTRHVFKLNG 1065
            LP  R+ +  KW++  K    GR+  +KARLVA+  SQ  G + F+T +P  R+ ++R +  LAAE                   K+    + P+GF  + +   V  LR+++Y  KQSGR+WN  LD  L  +G       P LY   G G    +L+LVYVDDLI+A + RE + + K K+S  F   D G L   LG+ V+RD   G        YI+E+L+ +G + CR      P T PL A    + AG     C++  ++ +Y+  +   M+    TRPD+ ++V + A+R K+P  E     + I RYL++  D+   +  +  G    GFVDADW G+  D KS T +VF L+G
Sbjct:  240 LPRNRRCVACKWVYSLKRDVSGRIERFKARLVAKGCSQKFGVDYFETFSPVCRLESVRLILALAAEMQLYLHHMDVCTAYLNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACNHEPCLYQQSGQGNL--MLILVYVDDLILACQSREDMEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRAYGSENCR------PATTPLDAGHQVLCAG---EQCQK-VDAGQYQSTIGELMWLGLTTRPDILHSVAKLAQRNKDPHSEHMVAVKHILRYLASTVDVKLHY--QKCGQAFTGFVDADWGGDRLDRKSYTGYVFFLSG 588          
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: A0A0C9RAA9_9HYME (POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RAA9_9HYME)

HSP 1 Score: 185 bits (470), Expect = 8.630e-48
Identity = 118/381 (30.97%), Postives = 194/381 (50.92%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVLVYVDDLIIAGRREKVNE-FKHKLSGLFRIEDLGSLSRVLGVRVRRD-------CPDGSYIREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGHGLEGFVDADWAGNVED*KSTTRHVFKLNGPVAPGSNS*SRDIVQRQT 1119
            LP  ++AI  KW+FK K   +G +  YKARLV +  SQ +G +  +T +P  R ++LR +  +AA+HD        +        +     + P G+  S +   V RL +SLY  KQ+ + WND L++ L+ +GL R   +  +YF   +   + + V +YVDD+++    +K  +  K++LS   +++D+GS S VLG+RV+RD            YI  VLK  G D C +V TP   ++ L     D+     E   K+      Y   V S +Y +  TRPD+++AV+  +R  +NP +  +   + + RYL    + G  F  + +   L G+ DADWAG+++  +ST+ +VF + G     S+   R +    T
Sbjct:  270 LPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQPEGY--SDNSGRVCRLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSE--YSMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMDDCNAVATPLDLSQKL---TLDMCPKSEEE--KKEMEKVPYMEAVGSLLYAAQNTRPDISFAVNLLSRFSQNPGKGHWLALKRVMRYLKGTVNKGIVF--RKSAQSLTGYCDADWAGDLDQRRSTSGYVFIMQGAAISWSSHRQRTVALSST 639          
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: V9H104_DROME (Drosophila melanogaster retrotransposon 1731 sequence n=1 Tax=Drosophila melanogaster TaxID=7227 RepID=V9H104_DROME)

HSP 1 Score: 184 bits (468), Expect = 5.820e-47
Identity = 124/363 (34.16%), Postives = 186/363 (51.24%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVLVYVDDLIIAGR-REKVNEFKHKLSGLFRIEDLGSLSRVLGVRVRRDCPDGS-------YIREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGHGLEGFVDADWAGNVED*KSTTRHVFKLNG 1065
            LP  R+ +  KW++  K    GR+  +KARLVA+  SQ  G + F+T +P  R+ ++R +  LAAE                   K+    + P+GF  + +   V  LR+++Y  KQSGR+WN  LD  L  +G       P LY   G G    +L+LVYVDDLI+A + RE + + K K+S  F   D G L   LG+ V+RD   G        YI+E+L+ +G + CR      P T PL A    + AG     C++  ++ +Y+  +   M+    TRPDM ++V + A+R ++P  E     + I RYL++  D+   +  +  G    GFVDADW G+  D KS T +VF L+G
Sbjct:  552 LPRNRRCVACKWVYSLKRDVSGRIERFKARLVAKGCSQKFGVDYFETFSPVCRLESVRLILALAAEMQLYLHHMDVCTAYLNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACNHEPCLYQQSGQGNL--MLILVYVDDLILACQSREDMEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRDYGSENCR------PATTPLDAGHQVLCAG---EQCQK-VDAGQYQSTIGELMWLGLTTRPDMLHSVAKLAQRNQDPHSEHMVAVKHILRYLASTVDVKLHY--QKCGQAFTGFVDADWGGDRLDRKSYTGYVFFLSG 900          
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 184 bits (467), Expect = 1.040e-46
Identity = 119/361 (32.96%), Postives = 186/361 (51.52%), Query Frame = 1
Query:    1 LPAWRKAIRKKWIFKRKLKEDGRMATYKARLVAQEFSQVKGEELFKTSAPAARISTLRTV*KLAAEHDFE*EGWT*MRRI*TPR*KNYCL*RYPRGFPLSRDIPFVRRLRQSLYDFKQSGRKWNDTLDDFLVGIGLDRFTTNPYLYFSRGDGGETDILVLVYVDDLIIAGRRE-KVNEFKHKLSGLFRIEDLGSLSRVLGVRVRRDCPDGS-------YIREVLKIHGFDKCRSVPTPPPETKPLGAVLSDIGAGIYESNCKRSANSTEYRGMVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPDLGHTFGDKSNGHGLEGFVDADWAGNVED*KSTTRHVFKL 1059
            LP  RK +  KW+FK K    G +  YKARLVAQ FSQ +G + + T +P A+++TLRT+  +A + ++  +                     P G   + D+ F  +L +SLY  KQ+ + W++  D+++  +GL++  ++  LY    +     I +L+YVDD+IIAG    K+ E K  L   F +ED G L+  LG+++  D   G        Y+ +VLK    D C ++ TP         + S +   I E N K+  N   YR +V S MY   G+RPD++YA++   R    P+   ++  + + RY+    + G  F  +SN   L GFVDADWA +  D KSTT ++FK+
Sbjct:  808 LPKGRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMIF--KLNKSLYGLKQASKCWHERFDNYIAKLGLEQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTP---------IESKLN--IEEDN-KQECNQP-YRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLFKV 1153          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16976.3904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9HZ03_PARCT5.310e-5231.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT1.060e-5132.87Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9KES8_PARCT2.330e-5134.44Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JEY7_PARCT5.760e-5134.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5S6QJX2_TRIMR1.410e-5035.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5S6QN85_TRIMR1.720e-4835.36Integrase catalytic domain-containing protein n=2 ... [more]
Q8MRT6_DROME6.280e-4834.16SD26211p n=1 Tax=Drosophila melanogaster TaxID=722... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16976contigH-paniculata_contig16976:855..2339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog164328.Phyra86176
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1421
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16976.3904.1prot_H-paniculata_contig16976.3904.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16976 1247..1483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929342.806511-UTR-H-paniculata_contig16976:854..12461622929342.806511-UTR-H-paniculata_contig16976:854..1246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16976 855..1246 -
1691480822.7473884-UTR-H-paniculata_contig16976:854..12461691480822.7473884-UTR-H-paniculata_contig16976:854..1246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16976 855..1246 -
1622929342.8390982-UTR-H-paniculata_contig16976:1483..15851622929342.8390982-UTR-H-paniculata_contig16976:1483..1585Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16976 1484..1585 -
1691480822.764259-UTR-H-paniculata_contig16976:1483..15851691480822.764259-UTR-H-paniculata_contig16976:1483..1585Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16976 1484..1585 -
1622929342.8567514-UTR-H-paniculata_contig16976:1628..16931622929342.8567514-UTR-H-paniculata_contig16976:1628..1693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16976 1629..1693 -
1691480822.7726707-UTR-H-paniculata_contig16976:1628..16931691480822.7726707-UTR-H-paniculata_contig16976:1628..1693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16976 1629..1693 -
1622929342.8699548-UTR-H-paniculata_contig16976:1714..23391622929342.8699548-UTR-H-paniculata_contig16976:1714..2339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16976 1715..2339 -
1691480822.78262-UTR-H-paniculata_contig16976:1714..23391691480822.78262-UTR-H-paniculata_contig16976:1714..2339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16976 1715..2339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929342.824725-CDS-H-paniculata_contig16976:1246..14831622929342.824725-CDS-H-paniculata_contig16976:1246..1483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16976 1247..1483 -
1691480822.7565665-CDS-H-paniculata_contig16976:1246..14831691480822.7565665-CDS-H-paniculata_contig16976:1246..1483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16976 1247..1483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16976.3904.1

>prot_H-paniculata_contig16976.3904.1 ID=prot_H-paniculata_contig16976.3904.1|Name=mRNA_H-paniculata_contig16976.3904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MVKSFMYTSTGTRPDMAYAVHQAARRMKNPSREDFSKCECIYRYLSTVPD
LGHTFGDKSNGHGLEGFVDADWAGNVED*
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mRNA from alignment at H-paniculata_contig16976:855..2339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16976.3904.1 ID=mRNA_H-paniculata_contig16976.3904.1|Name=mRNA_H-paniculata_contig16976.3904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1485bp|location=Sequence derived from alignment at H-paniculata_contig16976:855..2339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCGGCATGGCGGAAGGCGATTCGCAAAAAATGGATTTTCAAGCGGAA ACTGAAGGAGGACGGCAGAATGGCAACGTACAAAGCGCGACTGGTGGCTC AAGAGTTTTCACAAGTGAAGGGTGAAGAGTTATTTAAAACCAGTGCCCCC GCAGCTCGCATATCGACGTTACGTACTGTTTAAAAATTGGCCGCCGAACA TGATTTCGAATGAGAAGGCTGGACGTAGATGCGGCGTATTTGAACGCCTC GGTAGAAGAACTACTGTTTGTAAAGGTACCCCCGAGGTTTCCCTTTATCC CGAGACATACCGTTTGTGCGTCGCCTGCGTCAAAGCCTGTACGACTTCAA GCAGAGCGGCCGAAAGTGGAATGATACTCTTGACGATTTTCTTGTTGGGA TAGGACTCGACCGTTTCACCACCAACCCATACTTGTACTTTTCTCGCGGT GATGGGGGAGAAACAGATATTCTCGTGCTCGTCTATGTTGACGACCTGAT CATCGCTGGACGTCGTGAGAAAGTAAACGAGTTCAAGCACAAACTAAGTG GGCTTTTCAGGATTGAAGACCTGGGCTCCCTCTCGCGTGTGTTGGGAGTA AGGGTACGACGTGACTGCCCTGATGGTACCATATCAATATCCTAAGGTAG CTACATCCGCGAGGTACTAAAAATACACGGGTTTGACAAGTGTCGAAGCG TGCCCACCCCTGTAGAGGGAAAAATAGAGATTTCGGCCCGAGTCGGCTGA CAAGCCCCCCGAAACCAAACCACTTGGGGCTGTACTGTCGGACATAGGCG CAGGAATATATGAAAGCAACTGTAAAAGAAGTGCCAATTCAACTGAATAC AGAGGCATGGTAAAATCATTCATGTATACCTCAACAGGAACTCGACCTGA TATGGCATACGCTGTACACCAAGCAGCACGTCGTATGAAGAACCCATCAC GAGAAGACTTTAGTAAATGCGAGTGCATTTACCGCTATCTTAGTACCGTG CCTGACCTCGGCCATACGTTCGGCGATAAGAGCAATGGTCACGGTCTTGA AGGATTCGTTGATGCCGACTGGGCGGGAAATGTCGAAGACTGAAAGTCCA CAACACGGCACGTTTTCAAGCTAAACGGCCCTGTTGCTCCAGGAAGCAAC AGTTAGTCACGTGATATAGTACAGAGACAGACTACGGTTATGTAGCAGAA GTGGGAAAGGAGACGGTAAATCTTAGGGATTTACTAGGATCGATAGGATT CGGATGCAGGGCGAGCATGATATTGTTTAAGGACACTTCATCAGGTAGTG ATCTCAGTAAGGGATCTGACGCACACTGCAGGACAAAGCACATCAAAGTG CGCAGGCACGGAATTCGAGAGTGGATTCGAAAAGGAATATTGGCGTTGAA ATACATGCAGACTGGCGACCAACTCGCTGACATATTAGCGAAAAGACTGG GCAAAGTAAAGTTTGAGAGGCTCGGAAATTTACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig16976:855..2339-

>mRNA_H-paniculata_contig16976.3904.1 ID=mRNA_H-paniculata_contig16976.3904.1|Name=mRNA_H-paniculata_contig16976.3904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig16976:855..2339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAAATCATTCATGTATACCTCAACAGGAACTCGACCTGATATGGC
ATACGCTGTACACCAAGCAGCACGTCGTATGAAGAACCCATCACGAGAAG
ACTTTAGTAAATGCGAGTGCATTTACCGCTATCTTAGTACCGTGCCTGAC
CTCGGCCATACGTTCGGCGATAAGAGCAATGGTCACGGTCTTGAAGGATT
CGTTGATGCCGACTGGGCGGGAAATGTCGAAGACTGAATGGTAAAATCAT
TCATGTATACCTCAACAGGAACTCGACCTGATATGGCATACGCTGTACAC
CAAGCAGCACGTCGTATGAAGAACCCATCACGAGAAGACTTTAGTAAATG
CGAGTGCATTTACCGCTATCTTAGTACCGTGCCTGACCTCGGCCATACGT
TCGGCGATAAGAGCAATGGTCACGGTCTTGAAGGATTCGTTGATGCCGAC
TGGGCGGGAAATGTCGAAGACTGA
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