prot_H-paniculata_contig16966.3900.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig16966.3900.1
Unique Name	prot_H-paniculata_contig16966.3900.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	114

Homology

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.060e-44
Identity = 77/111 (69.37%), Postives = 94/111 (84.68%), Query Frame = 0

Query:    4 FSDDGDEDQGGVIVAQDDCTVYPAWRMVLRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTSG 114
            F D+ +E++GG +   D+    P WR+VLRRLVD+ +FQN IT+LIVLNTLVLA+DHHPMD+EF+ YLE FNFAFS+CFM+EM LK+AALGPREYA+DNFNLFDGFIV SG
Sbjct:  456 FIDENEEEEGGGVTGNDELQDLPTWRLVLRRLVDHVKFQNSITLLIVLNTLVLALDHHPMDEEFSTYLEVFNFAFSLCFMLEMALKVAALGPREYAKDNFNLFDGFIVISG 566

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.010e-25
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 0

Query:   25 YPAWRMVLRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTS 113
            Y  WR++L RL     F   IT LI+LNTL LA+DHHPMDD+F+  L+  N  F++CF +EM LKL ALGPR YA+D FNLFDG +V S
Sbjct:  595 YRDWRVILWRLTASDAFLRSITTLIILNTLTLALDHHPMDDDFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLS 683

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 8.820e-22
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 0

Query:   58 MDHHPMDDEFALYLEGFNFAFSVCFMVEMTLK-----LAALGPREYARDNFNLFDGFIVTSG 114
            MDHHPMD+EF+ Y+E FNFAFS+CFM+EM LK     +AALGPREYA+DNFNLFDGFIV SG
Sbjct:    1 MDHHPMDEEFSTYVEVFNFAFSLCFMLEMALKVGLYRIAALGPREYAKDNFNLFDGFIVISG 62

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.240e-21
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0

Query:   45 ITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTS 113
            IT LI+LNTL LA+DHHPMD+EF+  L+  N  F++CF +EM LKL ALGPR YA+D FNLFDG +V S
Sbjct:  229 ITTLIILNTLTLALDHHPMDEEFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLS 297

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A7S1G9I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9I4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.420e-20
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 0

Query:   32 LRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVT 112
            + RLV +  F  F+ VLIV NT+VLA DHHPMDD  +  LE  NF  ++ F +EM LKL  LG +EYARD FNLFD FIVT
Sbjct:  458 ITRLVKHPGFSTFVVVLIVANTVVLAWDHHPMDDTLSNNLEIVNFVLTILFTIEMILKLWGLGAKEYARDAFNLFDAFIVT 538

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: K3W515_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W515_GLOUD)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-15
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 0

Query:   32 LRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTSG 114
            L ++V +  F N + ++I+ NT+VLA+DH+PM  +    LE  NF  S  F++EM +KL  LG R+Y+RD FN+FD FIVT+G
Sbjct:  424 LFKIVSHPYFSNLVMLVILGNTVVLALDHYPMPPQLDSDLEIVNFGLSCFFILEMIIKLIGLGLRQYSRDRFNVFDAFIVTTG 506

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A078AKM0_STYLE (Voltage-gated ion channel superfamily n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AKM0_STYLE)

HSP 1 Score: 81.3 bits (199), Expect = 1.430e-15
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0

Query:   34 RLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTS 113
            +LV    F  FI++LIVLNT+ LA+D +P+D+E +L L+  N AFS+ FM+EM +KL A G + Y RD FN+FD  +V S
Sbjct:   24 KLVKSSYFTQFISILIVLNTIDLALDRYPIDEEQSLILDEINMAFSMVFMIEMIIKLLAFGFKAYFRDPFNVFDCVVVIS 103

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A2D4C0A0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0A0_PYTIN)

HSP 1 Score: 81.3 bits (199), Expect = 1.430e-15
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 0

Query:   27 AWRMVLRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTSG 114
            A  + L R+V +  F   I V+I  NT+VLA+DH+PM       LE  NF  S  F++EM LKL  LG ++YARD FN+FD FIVT G
Sbjct:  426 ARHLPLFRIVSHPIFGAIIMVVITANTIVLALDHYPMPPALDNDLEIINFGLSCVFLLEMVLKLFGLGLKQYARDQFNIFDAFIVTMG 513

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A2R5G299_9STRA (Voltage-dependent L-type calcium channel subunit alpha-1S n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G299_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.960e-15
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 0

Query:   35 LVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVT 112
            LV    FQ FIT+LIVLNT+ L+M+HH M      + +  N  F++ F +EM LKL  LGPR+YA+D FN+FD  IVT
Sbjct:  527 LVQSDVFQGFITLLIVLNTITLSMEHHNMSANERAFQDTANATFTIAFTIEMGLKLIGLGPRQYAKDFFNVFDFVIVT 604

[Close]

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A5D6XXB3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXB3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.640e-15
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 0

Query:   41 FQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTSG 114
            F +F+   I+ NT+VLA+DHHPM       LE  NF  S  F++EM LKL  LG R+YARD  NLFD FIV SG
Sbjct:  475 FSHFVMGAILANTVVLALDHHPMPPTLDEDLEIINFGLSCIFIIEMVLKLFGLGLRQYARDRMNLFDAFIVLSG 548

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FVE6_ECTSI	1.060e-44	69.37	Voltage Gated Calcium/Sodium Channel subunit alpha...	[more]
A0A6H5KPD7_9PHAE	2.010e-25	57.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JIB7_9PHAE	8.820e-22	74.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LI93_ECTSI	2.240e-21	63.77	Similar to sodium channel, voltage-gated, type IX,...	[more]
A0A7S1G9I4_9STRA	2.420e-20	58.02	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
K3W515_GLOUD	1.050e-15	46.99	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A078AKM0_STYLE	1.430e-15	50.00	Voltage-gated ion channel superfamily n=1 Tax=Styl...	[more]
A0A2D4C0A0_PYTIN	1.430e-15	48.86	Uncharacterized protein n=1 Tax=Pythium insidiosum...	[more]
A0A2R5G299_9STRA	1.960e-15	51.28	Voltage-dependent L-type calcium channel subunit a...	[more]
A0A5D6XXB3_9STRA	3.640e-15	54.05	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 41..112 e-value: 5.2E-14 score: 52.1
IPR027359	Voltage-dependent channel domain superfamily	GENE3D	1.20.120.350		coord: 29..114 e-value: 4.6E-23 score: 83.3
None	No IPR available	PANTHER	PTHR10037	VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM	coord: 21..112
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..40
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 67..88
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 62..66
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 41..61
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 89..114
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 38..111
None	No IPR available	TMHMM	TMhelix		coord: 41..58
None	No IPR available	TMHMM	TMhelix		coord: 73..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig16966	contig	H-paniculata_contig16966:631..3114 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig16966.3900.1	mRNA_H-paniculata_contig16966.3900.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig16966 630..3114 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig16966.3900.1 ID=prot_H-paniculata_contig16966.3900.1|Name=mRNA_H-paniculata_contig16966.3900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
NGGFSDDGDEDQGGVIVAQDDCTVYPAWRMVLRRLVDYHQFQNFITVLIV
LNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYAR
DNFNLFDGFIVTSG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom
IPR027359	Volt_channel_dom_sf